CF835722

Overview
NameCF835722
Unique NameCF835722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1125 contig Csv1_Contig1125:12..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.896e-45
Identity = 112/264 (42.42%), Postives = 146/264 (55.30%), Query Frame = -3
Query:  147 MKKNIVTFALVGILALAFPTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 830
            M+   V  A+V  +A+A  T     +V+SI++   FD  + ++   +C  K FYT DAF+ AA A+P FG+ GS +  KR++AAF A  +HET                C+ +E   +  YC   + Q+PC PGK YYGRGPIQL+ N NYG AG+AIG D LR P+ VA DP VSFKTALWFWMT      + H V+                 GFG     ING +ECG  Q ++V  RIG+YK YC+  GV  G NL C N
Sbjct:    1 MRSLAVVVAVVATVAMAIGTAH--GSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTP-SAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYN 261          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.896e-45
Identity = 102/246 (41.46%), Postives = 136/246 (55.28%), Query Frame = -3
Query:  147 PTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFG-SGSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMN---------------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 776
            PT     ++ SI++   FD  +K++   +C GK FY+ +AF+NAA+++P FG SG     KREIAAFFA  +HET                C++ E      YC     Q+PC PG+ Y+GRGPIQ++ N NYG  G+AIG D L  P+ VA DPV+SFK+ALWFWMT   P  +                      GFG     ING +ECG    ++VQ RIG+Y+ YC+  GV+PG NL C N
Sbjct:   67 PTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSG-QWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGN 311          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.896e-45
Identity = 102/246 (41.46%), Postives = 136/246 (55.28%), Query Frame = -3
Query:  147 PTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFG-SGSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMN---------------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 776
            PT     ++ SI++   FD  +K++   +C GK FY+ +AF+NAA+++P FG SG     KREIAAFFA  +HET                C++ E      YC     Q+PC PG+ Y+GRGPIQ++ N NYG  G+AIG D L  P+ VA DPV+SFK+ALWFWMT   P  +                      GFG     ING +ECG    ++VQ RIG+Y+ YC+  GV+PG NL C N
Sbjct:   72 PTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSG-QWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGN 316          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.476e-45
Identity = 101/239 (42.26%), Postives = 133/239 (55.65%), Query Frame = -3
Query:  147 NVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFG-SGSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMN---------------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 755
            ++ S ++   FD  +K++   SC GK+FY+ +AF+NAA+++P FG SG     KREIAAFFA  +HET                C++ E      YC   + Q+PC PG+ Y+GRGPIQ++ N NYG  G+AIG D L  P+ VA DPV+SFKTALWFWMT   P  +                      GFG     ING +ECG     +VQ RIG+Y+ YC+  GV PG NL C N
Sbjct:   78 DLGSAISNSMFDQMLKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERGNPGDYCPPSS-QWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVN 315          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 1.229e-44
Identity = 101/236 (42.80%), Postives = 135/236 (57.20%), Query Frame = -3
Query:  153 VASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC 752
            ++S+++   F+  +K++   +C GK FYT DAFL+AAKA+P F + G     KREIAAF    +HET                C++ E N S  YC + + ++PC  GK YYGRGPIQ++ N NYG  G+AIG D L  P+ VA DPV+SFKTALWFWMT      + H V+                 G+G     ING +ECG  Q ++VQ RIG+YK YC+ FG+  G NL C
Sbjct:   68 LSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPST-YC-QASSEFPCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDC 301          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.229e-44
Identity = 98/230 (42.61%), Postives = 130/230 (56.52%), Query Frame = -3
Query:  147 QFFDGIKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP-------VMNQ--------------GFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 731
            QF D +K++   +C  + FYT DAF+NAAK++P FG+ G     K+EIAAFF   +HET                C+ +E N S+ YC   + ++PC  GK YYGRGP+QL+ N NYG  G+AIG D L  P+ V+ DPV++FK A+WFWMT   P       ++ Q              G+G     ING +ECG  Q A+V  RIG+Y+ YCN  GV PG NL C N
Sbjct:   79 QFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSP-SAEWPCASGKSYYGRGPMQLSWNYNYGQCGRAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGVNPGGNLDCYN 307          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.605e-44
Identity = 106/246 (43.09%), Postives = 136/246 (55.28%), Query Frame = -3
Query:  147 PTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 776
            PT      V+SIV+   FD  + ++   +C  K FYT DAF+ AA A+P FG+ GS +  KRE+AAF A  +HET                C+ +E   ++ YC   + Q+PC PGK YYGRGPIQL+ N NYG AG+AIG D LR P+ VA DP VSFKTA+WFWMT      + H V+                 GFG     +NG +ECG  Q ++V  RIG+YK YC+   V  G NL C N
Sbjct:   72 PTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTP-SAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVGYGNNLDCYN 316          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.669e-44
Identity = 109/262 (41.60%), Postives = 141/262 (53.82%), Query Frame = -3
Query:  153 MKKNIVTFALVGILALAFPTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMNQ---------------------GFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC 830
            M+   V  A+V  +A+A  T     +V+SIV+   FD  + ++   +C  K FYT DAF+ AA A+P FG+ GS +  KRE+AAF A  +HET                C+ +E   S+ YC   + Q+PC PGK YYGRGPIQL+ N NYG AG+AIG D L  P+ VA D  V FKTA+WFWMT   P  +                      GFG     ING +ECG  Q ++V  RIG+YK YC+  GV  G NL C
Sbjct:    1 MRSLAVVVAVVATVAMAIGTAR--GSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTP-SAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDC 259          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 177.948 bits (450), Expect = 6.098e-44
Identity = 104/244 (42.62%), Postives = 134/244 (54.92%), Query Frame = -3
Query:  153 PTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC 776
            PT      V+SIV+   FD  + ++   +C  K FYT DAF+ AA A+  FG+ G  +  KRE+AAF A  +HET                C+ +E   ++ YC   + Q+PC PGK YYGRGPIQL+ N NYG AG+AIG D LR P+ VA DP VSFKTA+WFWMT      + H V+                 GFG     +NG +ECG  Q ++V  RIG+YK YC+  GV  G NL C
Sbjct:   69 PTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTP-SAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDC 311          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.040e-43
Identity = 104/239 (43.51%), Postives = 129/239 (53.97%), Query Frame = -3
Query:  147 NVASIVTPQFF-DGIKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 755
            ++  ++T   F D +K++   SC GK FYT DAF+ AAKA+P FG+ G     KREIAAF A  +HET                CY+ E      YC   + Q+PC  G+ YYGRGPIQ++ N NYG AGKAIG D +  P+ VA D V+SFKTA WFWMT      + H V+                 GFG     ING VECG     QVQ RIG+YK YC+   V+ G NL C N
Sbjct:   64 DIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYC-VPSAQWPCAAGRKYYGRGPIQISYNYNYGQAGKAIGVDLVNNPDLVATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDILRVSYGNNLDCNN 301          
The following BLAST results are available for this feature:
BLAST of CF835722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIC_SECCE1.896e-4542.42Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI2_TOBAC1.896e-4541.46Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_TOBAC1.896e-4541.46Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHIT_SOLTU2.476e-4542.26Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI2_PEA1.229e-4442.80Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI2_BRANA1.229e-4442.61Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIA_SECCE1.605e-4443.09Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI2_HORVU4.669e-4441.6026 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI1_HORVU6.098e-4442.6226 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIB_VITVI1.040e-4343.51Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M08_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835722 ID=CF835722; Name=CF835722; organism=Citrus sinensis; type=EST; length=853bp
TTTTTTTTTTTTTTTTTAAGCATAAAATATGGTCGGCAACACCCTTTTAT
TACTTCAATTTATTTTGTTTTAGGTATATGAAACCACCCTATATTATAAA
ATTACACCACATTATTTCAACAAGCCAGTGAAGTATCGGCGAAAACATTT
TAACAAGAGAGATTTGGGCCAGGAGCAACACCAAATTTGTTGCAATAATC
CTTATAATATCCAATGCGAGCTTGAACCTGAGCAGGTTGCTTGCCACCGC
ATTCAACGGCACCATTGATTCTCTGAATTGTTGCACCAAAACCTTGGTTC
ATAACTGGGTGCACATTGGTCATCCAAAACCACAAGGCAGTCTTAAATGA
CACAACGGGGTCCTTGGCCACCGTTTCCGGAGCTCTTAATCCGTCAAACC
CGATGGCTTTTCCGGCAGCTCCGTAGTTTCCATTTCCGGTGAGTTGGATC
GGTCCACGGCCGTAGTAGAACTTTCCGGGAACACATGGGTACTGTTTGTT
TTGTTCATCACAGTACCGGTTGGACTTGTTAATCTCTTCTATGTAGCACA
AATGTCCAGTTTCATGAGTGACGTGTGCAAAAAATGCAGCAATCTCACGC
TTCGAAACTTCAGGAGAGCCGCTACCAAATTGAGGATAAGCCTTGGCAGC
ATTCAGAAACGCATCTCTCGTGTAGAAGCTCTTGCCGGCACAACTCGCGG
CTGCCTGATTCTTTATGCCGTCGAAGAACTGGGGAGTCACAATGCTAGCA
ACATTTTGACACATTACTTTGGTGGGAAAAGCTAGGGCAAGAATGCCCAC
AAGAGCAAAGGTTACAATATTTTTTTTCATGTTAAGTGGAGCCATTTTGT
TTA
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