CF835722

Overview
NameCF835722
Unique NameCF835722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1125 contig Csv1_Contig1125:12..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 3.026e-43
Identity = 97/234 (41.45%), Postives = 131/234 (55.98%), Query Frame = -3
Query:  147 IVTPQFFDGIKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 743
            I + QF D +K++  A+C  + FYT +AF+ AAK++P FG+ G     K+E+AAFF   +HET                C+ +E N ++ YC E +  +PC  GK YYGRGP+QL+ N NYG  G+AIG D L  P+ VA D V++FK A+WFWMT      + H V+                 G+G     ING +ECG  Q  +V  RIG+Y+ YCN FGV PG NL C N
Sbjct:   90 ISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYC-EPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYN 322          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.162e-43
Identity = 99/237 (41.77%), Postives = 132/237 (55.70%), Query Frame = -3
Query:  153 NVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMNQ---------------GFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC 755
            +++++++   FD  +K++   +C  K FYT DAF+ AAKAYP FG+ G     KREIAAF    +HET                C++ E N S  YC     Q+PC PG+ YYGRGPIQ++ N NYG  G+AIG D L  P+ VA D V+SFK+ALWFWMT      + H V+                 G+G     ING +ECG  Q ++VQ RIG++K YC+  GV  G NL C
Sbjct:   75 DLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPST-YCSA-TPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDC 309          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.162e-43
Identity = 99/237 (41.77%), Postives = 132/237 (55.70%), Query Frame = -3
Query:  153 NVASIVTPQFFDGI-KNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMNQ---------------GFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC 755
            +++++++   FD + K++   +C  K FYT DAF+ AAKAYP FG+ G     KREIAAF    +HET                C++ E N S  YC     Q+PC PG+ YYGRGPIQ++ N NYG  G+AIG D L  P+ VA D V+SFK+ALWFWMT      + H V+                 G+G     ING +ECG  Q ++VQ RIG++K YC+  GV  G NL C
Sbjct:   74 DLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPS-AYCSA-TPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDC 308          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 5.162e-43
Identity = 105/239 (43.93%), Postives = 130/239 (54.39%), Query Frame = -3
Query:  147 VASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEIN-KSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 752
            VASI++P  FD  + ++   +CA K FYT DAF+ AA AYP F + G  +  KRE+AAF A  +HET                C+ EE N  +  YC E   ++PC  GK YYGRGPIQ+T N NYG AG+AIG D L  P+ VA D  VSFKTA WFWMT      + H V+                 G+G     ING VECG     +V  RIG+YK YC+  GV+ G NL C N
Sbjct:   76 VASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYC-EPKPEWPCAAGKKYYGRGPIQITYNYNYGPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYN 313          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.805e-43
Identity = 97/239 (40.59%), Postives = 137/239 (57.32%), Query Frame = -3
Query:  147 NVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 755
            ++++I++   FD  +K++   +C GKSFYT +AF+ AA+++  FG+ G     KRE+AAFFA  +HET                CY+ E      YC  Q+ Q+PC PG+ YYGRGPIQ++ N NYG  G+AIG + L  P+ VA + VVSFK+A+WFWMT      + H V+                 G+G     ING +ECG    A+VQ RIG+Y+ YC+  GV+PG N+ C N
Sbjct:   84 DISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFRGFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYC-VQSSQWPCAPGQKYYGRGPIQISYNYNYGPCGRAIGQNLLNNPDLVATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDCGN 321          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.707e-42
Identity = 98/239 (41.00%), Postives = 127/239 (53.14%), Query Frame = -3
Query:  147 NVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 755
            +V  +V    FD  +K +    CAG  FYT DAF+ AA+++  FG+ G     K+E+AAF A  +HET                C++ E N    YC    K +PC PGK YYGRGPIQLT N NYG AG+AI  D +  P+ ++ +P VSFKTA+WFWMT      + H V+                 G+G     ING +ECG  Q  +V  R+G+YK YC  FGV PG NL C N
Sbjct:   79 DVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSP--KDWPCAPGKKYYGRGPIQLTHNYNYGLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDCNN 315          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.707e-42
Identity = 96/238 (40.34%), Postives = 131/238 (55.04%), Query Frame = -3
Query:  147 VASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 752
            +  I++   FD  +K++   +C  K FYT DAFL AAK++P FG+ GS +V KRE+AAF    +HET                C+++E N S+ YC   + +YPC PGK YYGRGP+QL+ N NYG  G+A+  + L  P+ VA D V+SFKTALWFWMT      + H V+                 G+G     +NG +ECG     QV  R+G+++ YC   GV  G NL C N
Sbjct:    2 IEKIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYC-APSPRYPCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNLLGNPDLVATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYN 238          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.271e-41
Identity = 104/240 (43.33%), Postives = 132/240 (55.00%), Query Frame = -3
Query:  147 VASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKS--NRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 752
            VASIV+   FD  + ++  A+C  K+FYT DAF+ AA A+P F + G     KRE+AAF A  +HET                C+ EE N +  + YC  Q+ Q+PC  GK YYGRGPIQ++ N NYG AG+AIG + L  P+ VA D  VSFKTA WFWMT      + H VM                 G+G     ING VECG    ++V  RIG+YK YC+  GV+ G NL C N
Sbjct:   79 VASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYC-VQSSQWPCAAGKKYYGRGPIQISYNYNYGPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDCYN 317          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.699e-41
Identity = 97/242 (40.08%), Postives = 127/242 (52.48%), Query Frame = -3
Query:  147 MCQNVASIVTPQFFDGIK-NQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 764
            + QN++S+++   F+ I  ++   +C  K FYT +AF+ A K +  FG+ G      +EIAAF A  +HET                CY  E      YC   ++Q+PC PGK Y+GRGPIQ++ N NYGAAG AIG + L  P+ VA D VVSFKTALWFWMT      + H V+                 GFG     ING +EC     A +  RIG+Y+ YC   GV PG NL C N
Sbjct:    1 LSQNISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYC-ASSQQWPCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDCAN 241          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.699e-41
Identity = 95/240 (39.58%), Postives = 132/240 (55.00%), Query Frame = -3
Query:  147 NVASIVTPQFFDGIKNQAAAS-CAGK-SFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 755
            ++  +++   FD + N    + C GK +FY+ +AF++AA ++P FG+ G     KREIAAFFA  +HET                C++ E      YC   N Q+PC PG+ Y+GRGPIQ++ N NYG  G+AIG D L  P+ VA D ++SFK+A+WFWMT      + H V+                 GFG     ING +ECG    ++VQ RIG+Y+ YC   GV+PG NL C N
Sbjct:   65 DLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPGDYCTPSN-QWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSIISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGN 303          
The following BLAST results are available for this feature:
BLAST of CF835722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIB_ARATH3.026e-4341.45Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHIT_PHAVU5.162e-4341.77Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI5_PHAVU5.162e-4341.77Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI3_ORYSJ5.162e-4343.93Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI3_TOBAC8.805e-4340.59Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHIX_PEA5.707e-4241.00Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHIT_CARPA5.707e-4240.34Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI1_ORYSJ1.271e-4143.33Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHID_SOLLC3.699e-4140.08Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI2_SOLTU3.699e-4139.58Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M08_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835722 ID=CF835722; Name=CF835722; organism=Citrus sinensis; type=EST; length=853bp
TTTTTTTTTTTTTTTTTAAGCATAAAATATGGTCGGCAACACCCTTTTAT
TACTTCAATTTATTTTGTTTTAGGTATATGAAACCACCCTATATTATAAA
ATTACACCACATTATTTCAACAAGCCAGTGAAGTATCGGCGAAAACATTT
TAACAAGAGAGATTTGGGCCAGGAGCAACACCAAATTTGTTGCAATAATC
CTTATAATATCCAATGCGAGCTTGAACCTGAGCAGGTTGCTTGCCACCGC
ATTCAACGGCACCATTGATTCTCTGAATTGTTGCACCAAAACCTTGGTTC
ATAACTGGGTGCACATTGGTCATCCAAAACCACAAGGCAGTCTTAAATGA
CACAACGGGGTCCTTGGCCACCGTTTCCGGAGCTCTTAATCCGTCAAACC
CGATGGCTTTTCCGGCAGCTCCGTAGTTTCCATTTCCGGTGAGTTGGATC
GGTCCACGGCCGTAGTAGAACTTTCCGGGAACACATGGGTACTGTTTGTT
TTGTTCATCACAGTACCGGTTGGACTTGTTAATCTCTTCTATGTAGCACA
AATGTCCAGTTTCATGAGTGACGTGTGCAAAAAATGCAGCAATCTCACGC
TTCGAAACTTCAGGAGAGCCGCTACCAAATTGAGGATAAGCCTTGGCAGC
ATTCAGAAACGCATCTCTCGTGTAGAAGCTCTTGCCGGCACAACTCGCGG
CTGCCTGATTCTTTATGCCGTCGAAGAACTGGGGAGTCACAATGCTAGCA
ACATTTTGACACATTACTTTGGTGGGAAAAGCTAGGGCAAGAATGCCCAC
AAGAGCAAAGGTTACAATATTTTTTTTCATGTTAAGTGGAGCCATTTTGT
TTA
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