CF835722

Overview
NameCF835722
Unique NameCF835722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1125 contig Csv1_Contig1125:12..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 3.828e-38
Identity = 98/239 (41.00%), Postives = 127/239 (53.14%), Query Frame = -3
Query:  153 VASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS--GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNR--YCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMN---------------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC 752
            VASIV+   FD  + ++  A+C   +FYT DAF+ AA A+P F +  G  + +KRE+AAF A  +HET                C+ EE   +    YC +Q+ Q+PC  GK YYGRGPIQL+ N NYG AG+AIG D L  P+ VA D  VSF TA WFWMT   P  +                      G+G     ING +ECG  +  +V  RIG+YK YC+  GV+   NL C
Sbjct:   81 VASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYC-QQSAQWPCAAGKKYYGRGPIQLSYNFNYGPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDC 318          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.528e-38
Identity = 88/225 (39.11%), Postives = 124/225 (55.11%), Query Frame = -3
Query:  192 NVASIVTPQFFDG-IKNQAAASCAGKS-FYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMN---------------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 755
            ++ S+++   FD  +K++   +C GK+ FY+ +AF+NAA+++  FG+ G     KREIAAFFA  +HET                C++ E      YC     Q+PC PG+ Y+GRGPIQ++ N NYG  G+AIG D L  P+ VA DPV+SFK+A+WFWMT   P  +                      GFG     ING +ECG    ++VQ RIG+Y+ YC
Sbjct:   77 DIGSVISNSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSG-QWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYC 300          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.455e-37
Identity = 101/257 (39.30%), Postives = 132/257 (51.36%), Query Frame = -3
Query:  147 ALVGILALAFPTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS--GSPEVSKREIAAFFAHVTHETGH------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVM---------------NQGFGATIQRINGAVECG-GKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 806
            A   +LA+A  +    Q V S++T   F+  + N+  + C  + FYT DAF+ AA ++P FG+  GS E+ +RE+AAFF   +HET               C+ EEINK+                  YYGRGPIQLTG  NY AAG A+G D +  P+ V+ D VVSFKTA+WFWMT      + H V+                 G+G     ING +ECG G+  A V  RIGYYK YC+  G   G NL C N
Sbjct:   15 AAASLLAVA-ASGAAAQGVGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGGTRGSSDQFQWGYCFKEEINKAT--------------SPPYYGRGPIQLTGQSNYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVD-RIGYYKRYCDMLGAGYGSNLDCYN 255          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.481e-37
Identity = 99/264 (37.50%), Postives = 132/264 (50.00%), Query Frame = -3
Query:  147 MKKNIVTFALVGILALAFPTKVMCQNVASIVTPQFFD---GIKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHET---------GHLCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGF--DGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 830
            MK NIV+   +  L   F T  + QN  SIVT + F+     +N  A  C  K FYT DAF+ AA ++P FG+ G     K+EIAAFF   +HET         G  C++ +I++S+RY                YGRGPIQLT   NY  AG+ IG   D +  P+ VA DP++SF+TA+WFWMT      + H V+                 G+G     ING +EC       V++RIG+Y+ YC    V  G NL C N
Sbjct:    1 MKFNIVSPVALSCLFFLFLTGTLAQNAGSIVTRELFEQMLSFRNNDA--CPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGGSAGTFTGGYCFVRQIDQSDRY----------------YGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNN 246          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.233e-37
Identity = 99/264 (37.50%), Postives = 131/264 (49.62%), Query Frame = -3
Query:  147 MKKNIVTFALVGILALAFPTKVMCQNVASIVTPQFFD---GIKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHET---------GHLCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGF--DGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 830
            MK NIV+   +  L   F T  + QN  SIVT + F+     +N  A  C  K FYT DAF+ AA ++P FG+ G     K+EIAAFF   +HET         G  C++++I +S+RY                YGRGPIQLT   NY  AG+ IG   + +  P+ VA DP++SFKTA+WFWMT      + H V+                 G+G     ING  ECG       ++RIG+Y+ YC    V  G NL C N
Sbjct:    1 MKFNIVSPVALSCLFFLFLTGTLAQNAGSIVTRELFEQMLSFRNNDA--CPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGGSAGTFTGGYCFVKQIEQSDRY----------------YGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNN 246          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.429e-37
Identity = 95/254 (37.40%), Postives = 127/254 (50.00%), Query Frame = -3
Query:  147 ALVGILALAFPTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGSGSPEVSKR-EIAAFFAHVTHET-----------GHLCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVM---------------NQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 806
            AL   +   F T  + Q + SIVT   F+  +KN+    C    FYT DAF+ AA ++P FG+   + ++R EIAAFF   +HET           G  C++ + ++S+RY                YGRGPIQLT   NY  AG AIG + +  P+ VA D  +SFKTA+WFWMT      + H V+                 G+G     ING +ECG  +   V+ RIGYY+ YC    VAPG NL C N
Sbjct:    9 ALFCCVFFLFLTGSLAQGIGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAEPFTGGYCFVRQNDQSDRY----------------YGRGPIQLTNRNNYEKAGTAIGQELVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYN 246          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.231e-36
Identity = 95/245 (38.78%), Postives = 121/245 (49.39%), Query Frame = -3
Query:  147 FPTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFG-SGSPEVSKREIAAFFAHVTHET-----------GHLCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVM---------------NQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 779
            F T  + Q + SIVT   F+  +KN+    C    FYT DAF+ AA ++P FG SG     ++EIAAFF   +HET           G  C++ + ++S+RY                YGRGPIQLT   NY  AG AI  D +  P+ VA D  +SFKTA+WFWMT      + H V+                 G G     ING +ECG    A V+ RIGYY+ YC    VAPG NL C N
Sbjct:   18 FLTGSLAQGIGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAEPFTGGYCFVRQNDQSDRY----------------YGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYN 246          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 4.680e-36
Identity = 94/237 (39.66%), Postives = 121/237 (51.05%), Query Frame = -3
Query:  153 VASIVTPQFFDGI-KNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWM------TNVHPVMN---------------QGFGATIQRINGAVECG-GKQPAQVQARIGYYKDYCNKFGVAPGPNLSC 752
            ++ I+    FD + K +  A C    FYT +AF++AAK +P FG+ G   + KREIAAF    +HET                CY++EIN    YCD  +  Y CV GK Y GRGPIQL+ N NYG  G  +    L+ PE V  DPV+SFKTA+WFWM       + H V+                 G+G     ING +ECG G   A  + RIG+YK YC+  G   G NL C
Sbjct:   89 LSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEIN-CQPYCDPSSN-YQCVAGKQYCGRGPIQLSWNYNYGLCGDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDC 323          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.112e-36
Identity = 90/230 (39.13%), Postives = 122/230 (53.04%), Query Frame = -3
Query:  153 VASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT-------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC 752
            VAS+VT   F+  + ++  A+C  + FY   AF+ AA A+P F + G  +  KRE+AAF A  +H T         CY E    ++ +C   N ++PC PGK Y+ RGP+Q+  N NYGAAG+AIG D L  PE VA DP V+FKTALW WMT       + H V+                 G+G T   + G ++C G        R+ +YK YC+  GV  GPNL C
Sbjct:   97 VASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATSGGPYSWGYCYKEVKGATSDFC-VPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGG--ADRVAFYKRYCDVLGVGYGPNLDC 323          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.112e-36
Identity = 90/230 (39.13%), Postives = 122/230 (53.04%), Query Frame = -3
Query:  153 VASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT-------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC 752
            VAS+VT   F+  + ++  A+C  + FY   AF+ AA A+P F + G  +  KRE+AAF A  +H T         CY E    ++ +C   N ++PC PGK Y+ RGP+Q+  N NYGAAG+AIG D L  PE VA DP V+FKTALW WMT       + H V+                 G+G T   + G ++C G        R+ +YK YC+  GV  GPNL C
Sbjct:   97 VASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATSGGPYSWGYCYKEVKGATSDFC-VPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGG--ADRVAFYKRYCDVLGVGYGPNLDC 323          
The following BLAST results are available for this feature:
BLAST of CF835722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI12_ORYSJ3.828e-3841.00Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI4_SOLTU8.528e-3839.11Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI8_ORYSJ1.455e-3739.30Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_SOLCI2.481e-3737.50Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIA_SOLLC4.233e-3737.50Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIQ_TOBAC9.429e-3737.40Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIP_TOBAC1.231e-3638.78Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI6_POPTR4.680e-3639.66Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI7_ORYSJ6.112e-3639.13Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI6.112e-3639.13Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M08_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835722 ID=CF835722; Name=CF835722; organism=Citrus sinensis; type=EST; length=853bp
TTTTTTTTTTTTTTTTTAAGCATAAAATATGGTCGGCAACACCCTTTTAT
TACTTCAATTTATTTTGTTTTAGGTATATGAAACCACCCTATATTATAAA
ATTACACCACATTATTTCAACAAGCCAGTGAAGTATCGGCGAAAACATTT
TAACAAGAGAGATTTGGGCCAGGAGCAACACCAAATTTGTTGCAATAATC
CTTATAATATCCAATGCGAGCTTGAACCTGAGCAGGTTGCTTGCCACCGC
ATTCAACGGCACCATTGATTCTCTGAATTGTTGCACCAAAACCTTGGTTC
ATAACTGGGTGCACATTGGTCATCCAAAACCACAAGGCAGTCTTAAATGA
CACAACGGGGTCCTTGGCCACCGTTTCCGGAGCTCTTAATCCGTCAAACC
CGATGGCTTTTCCGGCAGCTCCGTAGTTTCCATTTCCGGTGAGTTGGATC
GGTCCACGGCCGTAGTAGAACTTTCCGGGAACACATGGGTACTGTTTGTT
TTGTTCATCACAGTACCGGTTGGACTTGTTAATCTCTTCTATGTAGCACA
AATGTCCAGTTTCATGAGTGACGTGTGCAAAAAATGCAGCAATCTCACGC
TTCGAAACTTCAGGAGAGCCGCTACCAAATTGAGGATAAGCCTTGGCAGC
ATTCAGAAACGCATCTCTCGTGTAGAAGCTCTTGCCGGCACAACTCGCGG
CTGCCTGATTCTTTATGCCGTCGAAGAACTGGGGAGTCACAATGCTAGCA
ACATTTTGACACATTACTTTGGTGGGAAAAGCTAGGGCAAGAATGCCCAC
AAGAGCAAAGGTTACAATATTTTTTTTCATGTTAAGTGGAGCCATTTTGT
TTA
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