CF835723

Overview
NameCF835723
Unique NameCF835723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1125 contig Csv1_Contig1125:1..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.842e-42
Identity = 100/231 (43.29%), Postives = 129/231 (55.84%), Query Frame = 2
Query:   89 PTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            PT      V+SIV+   FD  + ++   +C  K FYT DAF+ AA A+P FG+ GS +  KRE+AAF A  +HET                C+ +E   ++ YC   + Q+PC PGK YYGRGPIQL+ N NYG AG+AIG D LR P+ VA DP VSFKTA+WFWMT      + H V+                 GFG     +NG +ECG  Q ++V  RIG+YK YC
Sbjct:   72 PTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTP-SAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYC 301          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.017e-42
Identity = 105/249 (42.17%), Postives = 138/249 (55.42%), Query Frame = 2
Query:   35 MKKNIVTFALVGILALAFPTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            M+   V  A+V  +A+A  T     +V+SI++   FD  + ++   +C  K FYT DAF+ AA A+P FG+ GS +  KR++AAF A  +HET                C+ +E   +  YC   + Q+PC PGK YYGRGPIQL+ N NYG AG+AIG D LR P+ VA DP VSFKTALWFWMT      + H V+                 GFG     ING +ECG  Q ++V  RIG+YK YC
Sbjct:    1 MRSLAVVVAVVATVAMAIGTAH--GSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTP-SAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYC 246          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.252e-41
Identity = 98/224 (43.75%), Postives = 121/224 (54.02%), Query Frame = 2
Query:  110 NVASIVTPQFF-DGIKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            ++  ++T   F D +K++   SC GK FYT DAF+ AAKA+P FG+ G     KREIAAF A  +HET                CY+ E      YC   + Q+PC  G+ YYGRGPIQ++ N NYG AGKAIG D +  P+ VA D V+SFKTA WFWMT      + H V+                 GFG     ING VECG     QVQ RIG+YK YC
Sbjct:   64 DIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYC-VPSAQWPCAAGRKYYGRGPIQISYNYNYGQAGKAIGVDLVNNPDLVATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYC 286          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.547e-41
Identity = 103/249 (41.37%), Postives = 134/249 (53.82%), Query Frame = 2
Query:   35 MKKNIVTFALVGILALAFPTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMNQ---------------------GFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            M+   V  A+V  +A+A  T     +V+SIV+   FD  + ++   +C  K FYT DAF+ AA A+P FG+ GS +  KRE+AAF A  +HET                C+ +E   S+ YC   + Q+PC PGK YYGRGPIQL+ N NYG AG+AIG D L  P+ VA D  V FKTA+WFWMT   P  +                      GFG     ING +ECG  Q ++V  RIG+YK YC
Sbjct:    1 MRSLAVVVAVVATVAMAIGTAR--GSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTP-SAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYC 246          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 7.245e-41
Identity = 95/223 (42.60%), Postives = 127/223 (56.95%), Query Frame = 2
Query:  113 VASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            ++S+++   F+  +K++   +C GK FYT DAFL+AAKA+P F + G     KREIAAF    +HET                C++ E N S  YC + + ++PC  GK YYGRGPIQ++ N NYG  G+AIG D L  P+ VA DPV+SFKTALWFWMT      + H V+                 G+G     ING +ECG  Q ++VQ RIG+YK YC
Sbjct:   68 LSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPST-YC-QASSEFPCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYC 288          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 167.162 bits (422), Expect = 7.245e-41
Identity = 98/231 (42.42%), Postives = 127/231 (54.98%), Query Frame = 2
Query:   89 PTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            PT      V+SIV+   FD  + ++   +C  K FYT DAF+ AA A+  FG+ G  +  KRE+AAF A  +HET                C+ +E   ++ YC   + Q+PC PGK YYGRGPIQL+ N NYG AG+AIG D LR P+ VA DP VSFKTA+WFWMT      + H V+                 GFG     +NG +ECG  Q ++V  RIG+YK YC
Sbjct:   69 PTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTP-SAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYC 298          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.462e-41
Identity = 93/224 (41.52%), Postives = 124/224 (55.36%), Query Frame = 2
Query:  110 NVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFG-SGSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMN---------------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            ++ S ++   FD  +K++   SC GK+FY+ +AF+NAA+++P FG SG     KREIAAFFA  +HET                C++ E      YC   + Q+PC PG+ Y+GRGPIQ++ N NYG  G+AIG D L  P+ VA DPV+SFKTALWFWMT   P  +                      GFG     ING +ECG     +VQ RIG+Y+ YC
Sbjct:   78 DLGSAISNSMFDQMLKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERGNPGDYCPPSS-QWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYC 300          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.462e-41
Identity = 94/231 (40.69%), Postives = 126/231 (54.55%), Query Frame = 2
Query:   89 PTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFG-SGSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMN---------------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            PT     ++ SI++   FD  +K++   +C GK FY+ +AF+NAA+++P FG SG     KREIAAFFA  +HET                C++ E      YC     Q+PC PG+ Y+GRGPIQ++ N NYG  G+AIG D L  P+ VA DPV+SFK+ALWFWMT   P  +                      GFG     ING +ECG    ++VQ RIG+Y+ YC
Sbjct:   67 PTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSG-QWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYC 296          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 9.462e-41
Identity = 94/231 (40.69%), Postives = 126/231 (54.55%), Query Frame = 2
Query:   89 PTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFG-SGSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMN---------------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            PT     ++ SI++   FD  +K++   +C GK FY+ +AF+NAA+++P FG SG     KREIAAFFA  +HET                C++ E      YC     Q+PC PG+ Y+GRGPIQ++ N NYG  G+AIG D L  P+ VA DPV+SFK+ALWFWMT   P  +                      GFG     ING +ECG    ++VQ RIG+Y+ YC
Sbjct:   72 PTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSG-QWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYC 301          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.010e-40
Identity = 93/224 (41.52%), Postives = 125/224 (55.80%), Query Frame = 2
Query:  110 NVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMNQ---------------GFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            +++++++   FD  +K++   +C  K FYT DAF+ AAKAYP FG+ G     KREIAAF    +HET                C++ E N S  YC     Q+PC PG+ YYGRGPIQ++ N NYG  G+AIG D L  P+ VA D V+SFK+ALWFWMT      + H V+                 G+G     ING +ECG  Q ++VQ RIG++K YC
Sbjct:   75 DLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPST-YCSA-TPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYC 296          
The following BLAST results are available for this feature:
BLAST of CF835723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIA_SECCE3.842e-4243.29Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHIC_SECCE5.017e-4242.17Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHIB_VITVI3.252e-4143.75Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI2_HORVU5.547e-4141.3726 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI2_PEA7.245e-4142.60Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI1_HORVU7.245e-4142.4226 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIT_SOLTU9.462e-4141.52Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI2_TOBAC9.462e-4140.69Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_TOBAC9.462e-4140.69Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHIT_PHAVU8.010e-4041.52Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835723 ID=CF835723; Name=CF835723; organism=Citrus sinensis; type=EST; length=673bp
TTTCTCTACTCCTAATAAAATGGCTCCACTTAACATGAAAAAAAATATTG
TAACCTTTGCTCTTGTGGGCATTCTTGCCCTAGCTTTTCCCACCAAAGTA
ATGTGTCAAAATGTTGCTAGCATTGTGACTCCCCAGTTCTTCGACGGCAT
AAAGAATCAGGCAGCCGCGAGTTGTGCCGGCAAGAGCTTCTACACGAGAG
ATGCGTTTCTGAATGCTGCCAAGGCTTATCCTCAATTTGGTAGCGGCTCT
CCTGAAGTTTCGAAGCGTGAGATTGCTGCATTTTTTGCACACGTCACTCA
TGAAACTGGACATTTGTGCTACATAGAAGAGATTAACAAGTCCAACCGGT
ACTGTGATGAACAAAACAAACAGTACCCATGTGTTCCCGGAAAGTTCTAC
TACGGCCGTGGACCGATCCAACTCACCGGAAATGGAAACTACGGAGCTGC
CGGAAAAGCCATCGGGTTTGACGGATTAAGAGCTCCGGAAACGGTGGCCA
AGGACCCCGTTGTGTCATTTAAGACTGCCTTGTGGTTTTGGATGACCAAT
GTGCACCCAGTTATGAACCAAGGTTTTGGTGCAACAATTCAGAGAATCAA
TGGTGCCGTTGAATGCGGTGGCAAGCAACCTGCTCAGGTTCAAGCTCGCA
TTGGATATTATAAGGATTATTGC
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