CF835723

Overview
NameCF835723
Unique NameCF835723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1125 contig Csv1_Contig1125:1..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.010e-40
Identity = 93/224 (41.52%), Postives = 125/224 (55.80%), Query Frame = 2
Query:  110 NVASIVTPQFFDGI-KNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMNQ---------------GFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            +++++++   FD + K++   +C  K FYT DAF+ AAKAYP FG+ G     KREIAAF    +HET                C++ E N S  YC     Q+PC PG+ YYGRGPIQ++ N NYG  G+AIG D L  P+ VA D V+SFK+ALWFWMT      + H V+                 G+G     ING +ECG  Q ++VQ RIG++K YC
Sbjct:   74 DLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPS-AYCSA-TPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYC 295          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.010e-40
Identity = 89/215 (41.40%), Postives = 121/215 (56.28%), Query Frame = 2
Query:  134 QFFDGIKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP-------VMNQ--------------GFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            QF D +K++   +C  + FYT DAF+NAAK++P FG+ G     K+EIAAFF   +HET                C+ +E N S+ YC   + ++PC  GK YYGRGP+QL+ N NYG  G+AIG D L  P+ V+ DPV++FK A+WFWMT   P       ++ Q              G+G     ING +ECG  Q A+V  RIG+Y+ YC
Sbjct:   79 QFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSP-SAEWPCASGKSYYGRGPMQLSWNYNYGQCGRAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYC 292          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.044e-39
Identity = 98/224 (43.75%), Postives = 121/224 (54.02%), Query Frame = 2
Query:  113 VASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEIN-KSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            VASI++P  FD  + ++   +CA K FYT DAF+ AA AYP F + G  +  KRE+AAF A  +HET                C+ EE N  +  YC E   ++PC  GK YYGRGPIQ+T N NYG AG+AIG D L  P+ VA D  VSFKTA WFWMT      + H V+                 G+G     ING VECG     +V  RIG+YK YC
Sbjct:   76 VASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYC-EPKPEWPCAAGKKYYGRGPIQITYNYNYGPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYC 298          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.973e-38
Identity = 89/223 (39.91%), Postives = 124/223 (55.61%), Query Frame = 2
Query:  113 VASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            +  I++   FD  +K++   +C  K FYT DAFL AAK++P FG+ GS +V KRE+AAF    +HET                C+++E N S+ YC   + +YPC PGK YYGRGP+QL+ N NYG  G+A+  + L  P+ VA D V+SFKTALWFWMT      + H V+                 G+G     +NG +ECG     QV  R+G+++ YC
Sbjct:    2 IEKIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYC-APSPRYPCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNLLGNPDLVATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYC 223          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.577e-38
Identity = 90/224 (40.18%), Postives = 127/224 (56.70%), Query Frame = 2
Query:  110 NVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            ++++I++   FD  +K++   +C GKSFYT +AF+ AA+++  FG+ G     KRE+AAFFA  +HET                CY+ E      YC  Q+ Q+PC PG+ YYGRGPIQ++ N NYG  G+AIG + L  P+ VA + VVSFK+A+WFWMT      + H V+                 G+G     ING +ECG    A+VQ RIG+Y+ YC
Sbjct:   84 DISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFRGFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYC-VQSSQWPCAPGQKYYGRGPIQISYNYNYGPCGRAIGQNLLNNPDLVATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYC 306          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.741e-38
Identity = 88/225 (39.11%), Postives = 124/225 (55.11%), Query Frame = 2
Query:  110 NVASIVTPQFFDG-IKNQAAASCAGKS-FYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMN---------------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            ++ S+++   FD  +K++   +C GK+ FY+ +AF+NAA+++  FG+ G     KREIAAFFA  +HET                C++ E      YC     Q+PC PG+ Y+GRGPIQ++ N NYG  G+AIG D L  P+ VA DPV+SFK+A+WFWMT   P  +                      GFG     ING +ECG    ++VQ RIG+Y+ YC
Sbjct:   77 DIGSVISNSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSG-QWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYC 300          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.498e-38
Identity = 97/225 (43.11%), Postives = 123/225 (54.67%), Query Frame = 2
Query:  113 VASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKS--NRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            VASIV+   FD  + ++  A+C  K+FYT DAF+ AA A+P F + G     KRE+AAF A  +HET                C+ EE N +  + YC  Q+ Q+PC  GK YYGRGPIQ++ N NYG AG+AIG + L  P+ VA D  VSFKTA WFWMT      + H VM                 G+G     ING VECG    ++V  RIG+YK YC
Sbjct:   79 VASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYC-VQSSQWPCAAGKKYYGRGPIQISYNYNYGPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYC 302          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 9.792e-38
Identity = 87/219 (39.73%), Postives = 121/219 (55.25%), Query Frame = 2
Query:  122 IVTPQFFDGIKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            I + QF D +K++  A+C  + FYT +AF+ AAK++P FG+ G     K+E+AAFF   +HET                C+ +E N ++ YC E +  +PC  GK YYGRGP+QL+ N NYG  G+AIG D L  P+ VA D V++FK A+WFWMT      + H V+                 G+G     ING +ECG  Q  +V  RIG+Y+ YC
Sbjct:   90 ISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYC-EPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYC 307          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.849e-37
Identity = 89/222 (40.09%), Postives = 119/222 (53.60%), Query Frame = 2
Query:  119 SIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH--------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMN---------------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            S++T + FD  + ++    C  + FYT DAF+ AAK++P F + G     KRE+AAF A  +HET                 CY  E+N ++ YC + +  YPC PGK Y+GRGP+QLT N NYG  G+AIG D L  P+ +A DP +SFK+A WFWMT   P  +                      GFG     ING +ECG    A+V+ RIG+YK YC
Sbjct:   74 SLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWAAPDGPYTWGYCYNRELNPAD-YC-QWDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIGVDLLNNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYC 293          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.721e-37
Identity = 89/224 (39.73%), Postives = 118/224 (52.68%), Query Frame = 2
Query:  110 NVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            +V  +V    FD  +K +    CAG  FYT DAF+ AA+++  FG+ G     K+E+AAF A  +HET                C++ E N    YC    K +PC PGK YYGRGPIQLT N NYG AG+AI  D +  P+ ++ +P VSFKTA+WFWMT      + H V+                 G+G     ING +ECG  Q  +V  R+G+YK YC
Sbjct:   79 DVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSP--KDWPCAPGKKYYGRGPIQLTHNYNYGLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYC 300          
The following BLAST results are available for this feature:
BLAST of CF835723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI5_PHAVU8.010e-4041.52Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_BRANA8.010e-4041.40Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI3_ORYSJ3.044e-3943.75Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_CARPA1.973e-3839.91Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI3_TOBAC2.577e-3840.18Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI4_SOLTU5.741e-3839.11Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_ORYSJ7.498e-3843.11Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_ARATH9.792e-3839.73Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI1_THECC2.849e-3740.09Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIX_PEA3.721e-3739.73Endochitinase OS=Pisum sativum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835723 ID=CF835723; Name=CF835723; organism=Citrus sinensis; type=EST; length=673bp
TTTCTCTACTCCTAATAAAATGGCTCCACTTAACATGAAAAAAAATATTG
TAACCTTTGCTCTTGTGGGCATTCTTGCCCTAGCTTTTCCCACCAAAGTA
ATGTGTCAAAATGTTGCTAGCATTGTGACTCCCCAGTTCTTCGACGGCAT
AAAGAATCAGGCAGCCGCGAGTTGTGCCGGCAAGAGCTTCTACACGAGAG
ATGCGTTTCTGAATGCTGCCAAGGCTTATCCTCAATTTGGTAGCGGCTCT
CCTGAAGTTTCGAAGCGTGAGATTGCTGCATTTTTTGCACACGTCACTCA
TGAAACTGGACATTTGTGCTACATAGAAGAGATTAACAAGTCCAACCGGT
ACTGTGATGAACAAAACAAACAGTACCCATGTGTTCCCGGAAAGTTCTAC
TACGGCCGTGGACCGATCCAACTCACCGGAAATGGAAACTACGGAGCTGC
CGGAAAAGCCATCGGGTTTGACGGATTAAGAGCTCCGGAAACGGTGGCCA
AGGACCCCGTTGTGTCATTTAAGACTGCCTTGTGGTTTTGGATGACCAAT
GTGCACCCAGTTATGAACCAAGGTTTTGGTGCAACAATTCAGAGAATCAA
TGGTGCCGTTGAATGCGGTGGCAAGCAACCTGCTCAGGTTCAAGCTCGCA
TTGGATATTATAAGGATTATTGC
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