CF835723

Overview
NameCF835723
Unique NameCF835723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1125 contig Csv1_Contig1125:1..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.042e-35
Identity = 92/233 (39.48%), Postives = 118/233 (50.64%), Query Frame = 2
Query:   80 LAFPTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHET------------GHLCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVM---------------NQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            L F T    Q+V +IVT   F+  +KN+    C  K FYT DAF+ AA ++P FG+ G     K+EIAAFF   +HET            G  C++ E N+                G  +YGRGPIQLTG  NY  AG+AIG D +  P+ VA D  VSFKTA+WFWMT      + H V+                 G+G     ING +ECG  Q  QV+ RIG+Y+ YC
Sbjct:    8 LLFLTGSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSADGPFAGGYCFVREGNQM---------------GSGFYGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYC 225          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.042e-35
Identity = 86/225 (38.22%), Postives = 122/225 (54.22%), Query Frame = 2
Query:  110 NVASIVTPQFFDGIKNQAAAS-CAGKS-FYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            ++  +++   FD + N    + C GK+ FY+ +AF++AA ++P FG+ G     KREIAAF A  +HET                C++ E      YC   + Q+PC PG+ Y+GRGPIQ++ N NYG  G+AIG D L  P+ VA D V+SFK+A+WFWMT      + H V+                 GFG     ING +ECG    ++VQ RIG+Y+ YC
Sbjct:   67 DLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSS-QWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYC 290          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.257e-34
Identity = 93/249 (37.35%), Postives = 126/249 (50.60%), Query Frame = 2
Query:   35 MKKNIVTFALVGILALAFPTKVMCQNVASIVTPQFFD---GIKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHET---------GHLCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGF--DGLRAPETVAKDPVVSFKTALWFWMT------NVHPVM---------------NQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            MK NIV+   +  L   F T  + QN  SIVT + F+     +N  A  C  K FYT DAF+ AA ++P FG+ G     K+EIAAFF   +HET         G  C++ +I++S+RY                YGRGPIQLT   NY  AG+ IG   D +  P+ VA DP++SF+TA+WFWMT      + H V+                 G+G     ING +EC       V++RIG+Y+ YC
Sbjct:    1 MKFNIVSPVALSCLFFLFLTGTLAQNAGSIVTRELFEQMLSFRNNDA--CPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGGSAGTFTGGYCFVRQIDQSDRY----------------YGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYC 231          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.257e-34
Identity = 95/242 (39.26%), Postives = 125/242 (51.65%), Query Frame = 2
Query:   59 ALVGILALAFPTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS--GSPEVSKREIAAFFAHVTHETGH------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVM---------------NQGFGATIQRINGAVECG-GKQPAQVQARIGYYKDYC 673
            A   +LA+A  +    Q V S++T   F+  + N+  + C  + FYT DAF+ AA ++P FG+  GS E+ +RE+AAFF   +HET               C+ EEINK+                  YYGRGPIQLTG  NY AAG A+G D +  P+ V+ D VVSFKTA+WFWMT      + H V+                 G+G     ING +ECG G+  A V  RIGYYK YC
Sbjct:   15 AAASLLAVA-ASGAAAQGVGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGGTRGSSDQFQWGYCFKEEINKAT--------------SPPYYGRGPIQLTGQSNYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVD-RIGYYKRYC 240          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.851e-34
Identity = 93/249 (37.35%), Postives = 125/249 (50.20%), Query Frame = 2
Query:   35 MKKNIVTFALVGILALAFPTKVMCQNVASIVTPQFFD---GIKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHET---------GHLCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGF--DGLRAPETVAKDPVVSFKTALWFWMT------NVHPVM---------------NQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            MK NIV+   +  L   F T  + QN  SIVT + F+     +N  A  C  K FYT DAF+ AA ++P FG+ G     K+EIAAFF   +HET         G  C++++I +S+RY                YGRGPIQLT   NY  AG+ IG   + +  P+ VA DP++SFKTA+WFWMT      + H V+                 G+G     ING  ECG       ++RIG+Y+ YC
Sbjct:    1 MKFNIVSPVALSCLFFLFLTGTLAQNAGSIVTRELFEQMLSFRNNDA--CPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGGSAGTFTGGYCFVKQIEQSDRY----------------YGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYC 231          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.560e-33
Identity = 89/224 (39.73%), Postives = 115/224 (51.34%), Query Frame = 2
Query:  113 VASIVTPQFFDGI-KNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWM------TNVHPVMN---------------QGFGATIQRINGAVECG-GKQPAQVQARIGYYKDYC 673
            ++ I+    FD + K +  A C    FYT +AF++AAK +P FG+ G   + KREIAAF    +HET                CY++EIN    YCD  +  Y CV GK Y GRGPIQL+ N NYG  G  +    L+ PE V  DPV+SFKTA+WFWM       + H V+                 G+G     ING +ECG G   A  + RIG+YK YC
Sbjct:   89 LSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEIN-CQPYCDPSSN-YQCVAGKQYCGRGPIQLSWNYNYGLCGDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYC 310          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.760e-32
Identity = 87/239 (36.40%), Postives = 119/239 (49.79%), Query Frame = 2
Query:   59 ALVGILALAFPTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGSGSPEVSKR-EIAAFFAHVTHET-----------GHLCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVM---------------NQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            AL   +   F T  + Q + SIVT   F+  +KN+    C    FYT DAF+ AA ++P FG+   + ++R EIAAFF   +HET           G  C++ + ++S+RY                YGRGPIQLT   NY  AG AIG + +  P+ VA D  +SFKTA+WFWMT      + H V+                 G+G     ING +ECG  +   V+ RIGYY+ YC
Sbjct:    9 ALFCCVFFLFLTGSLAQGIGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAEPFTGGYCFVRQNDQSDRY----------------YGRGPIQLTNRNNYEKAGTAIGQELVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYC 231          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.604e-32
Identity = 87/230 (37.83%), Postives = 113/230 (49.13%), Query Frame = 2
Query:   86 FPTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFG-SGSPEVSKREIAAFFAHVTHET-----------GHLCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVM---------------NQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            F T  + Q + SIVT   F+  +KN+    C    FYT DAF+ AA ++P FG SG     ++EIAAFF   +HET           G  C++ + ++S+RY                YGRGPIQLT   NY  AG AI  D +  P+ VA D  +SFKTA+WFWMT      + H V+                 G G     ING +ECG    A V+ RIGYY+ YC
Sbjct:   18 FLTGSLAQGIGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAEPFTGGYCFVRQNDQSDRY----------------YGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYC 231          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.049e-31
Identity = 83/217 (38.25%), Postives = 114/217 (52.53%), Query Frame = 2
Query:  113 VASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT-------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            VAS+VT   F+  + ++  A+C  + FY   AF+ AA A+P F + G  +  KRE+AAF A  +H T         CY E    ++ +C   N ++PC PGK Y+ RGP+Q+  N NYGAAG+AIG D L  PE VA DP V+FKTALW WMT       + H V+                 G+G T   + G ++C G        R+ +YK YC
Sbjct:   97 VASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATSGGPYSWGYCYKEVKGATSDFC-VPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGG--ADRVAFYKRYC 310          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.049e-31
Identity = 83/217 (38.25%), Postives = 114/217 (52.53%), Query Frame = 2
Query:  113 VASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT-------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            VAS+VT   F+  + ++  A+C  + FY   AF+ AA A+P F + G  +  KRE+AAF A  +H T         CY E    ++ +C   N ++PC PGK Y+ RGP+Q+  N NYGAAG+AIG D L  PE VA DP V+FKTALW WMT       + H V+                 G+G T   + G ++C G        R+ +YK YC
Sbjct:   97 VASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATSGGPYSWGYCYKEVKGATSDFC-VPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGG--ADRVAFYKRYC 310          
The following BLAST results are available for this feature:
BLAST of CF835723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIB_SOLLC2.042e-3539.48Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI3_SOLTU2.042e-3538.22Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHIA_SOLCI2.257e-3437.35Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI8_ORYSJ2.257e-3439.26Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_SOLLC3.851e-3437.35Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI6_POPTR5.560e-3339.73Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIQ_TOBAC2.760e-3236.40Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIP_TOBAC3.604e-3237.83Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI7_ORYSJ1.049e-3138.25Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI1.049e-3138.25Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01M08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835723 ID=CF835723; Name=CF835723; organism=Citrus sinensis; type=EST; length=673bp
TTTCTCTACTCCTAATAAAATGGCTCCACTTAACATGAAAAAAAATATTG
TAACCTTTGCTCTTGTGGGCATTCTTGCCCTAGCTTTTCCCACCAAAGTA
ATGTGTCAAAATGTTGCTAGCATTGTGACTCCCCAGTTCTTCGACGGCAT
AAAGAATCAGGCAGCCGCGAGTTGTGCCGGCAAGAGCTTCTACACGAGAG
ATGCGTTTCTGAATGCTGCCAAGGCTTATCCTCAATTTGGTAGCGGCTCT
CCTGAAGTTTCGAAGCGTGAGATTGCTGCATTTTTTGCACACGTCACTCA
TGAAACTGGACATTTGTGCTACATAGAAGAGATTAACAAGTCCAACCGGT
ACTGTGATGAACAAAACAAACAGTACCCATGTGTTCCCGGAAAGTTCTAC
TACGGCCGTGGACCGATCCAACTCACCGGAAATGGAAACTACGGAGCTGC
CGGAAAAGCCATCGGGTTTGACGGATTAAGAGCTCCGGAAACGGTGGCCA
AGGACCCCGTTGTGTCATTTAAGACTGCCTTGTGGTTTTGGATGACCAAT
GTGCACCCAGTTATGAACCAAGGTTTTGGTGCAACAATTCAGAGAATCAA
TGGTGCCGTTGAATGCGGTGGCAAGCAACCTGCTCAGGTTCAAGCTCGCA
TTGGATATTATAAGGATTATTGC
back to top