CF835723

Overview
NameCF835723
Unique NameCF835723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1125 contig Csv1_Contig1125:1..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.978e-30
Identity = 82/212 (38.68%), Postives = 103/212 (48.58%), Query Frame = 2
Query:  149 IKNQAAASCAGKSFYTRDAFLNAAKAYPQFG-SGSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQ-YPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT-------NVHPVM---------------NQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            + N+   SC GK FYT DA+  A + YP FG +G  +  KRE+AAFFA  + ET                C + E+N ++ YCD + K  YPCV    YYGRGP+QL  N NYG  G  +G + L  PE VA DPV+SF+ ALWFWM        + H V+                 GFG     I    EC      + Q RI YY  YC
Sbjct:   76 LPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVAD--YYGRGPLQLRWNYNYGECGNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYC 285          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.373e-30
Identity = 79/184 (42.93%), Postives = 99/184 (53.80%), Query Frame = 2
Query:  182 KSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGHLCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKD 667
            + FYT DAF+ AAK++P F + GS +V KRE+AAF A  +HET           +  +    +  Y       Y+GRGPIQ++ N NYGAAGKAIG D LR P+ V  D  V FKTALWFWMT      + H V+                 G+G     I+G VECG  Q + V  RIGYYKD
Sbjct:   17 RGFYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHET-----------TGGWPTAPDGPYELGSTSDYFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYKD 189          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.406e-30
Identity = 85/212 (40.09%), Postives = 113/212 (53.30%), Query Frame = 2
Query:  113 VASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHET-GHLCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP-------VMNQ--------------GFGATIQRINGAVECG-GKQPAQVQARIGYYKDYC 673
            V SI+T   F+  + ++    C G +FYT DAF+ AA  +P+FG+ G+ E  +RE+AAFF   +HET G      +   +  YC   N+  P  P   YYGRGPIQLT   NY  AG A+G D +  P+ V+ DPVV+F+TA+WFWMT   P       + NQ              G+G     ING  ECG G      + R+GYYK YC
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYC-RVNEITPSDPP--YYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYC 234          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 5.954e-27
Identity = 78/211 (36.97%), Postives = 109/211 (51.66%), Query Frame = 2
Query:  122 IVTPQFFDGIKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH------------LCYIEEINKS-NRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMNQGFGATIQRINGAV-------ECGGKQPAQVQARIGYYKDYC 673
            +VT   FD + +     C  + FY+  +FL AA+++P FG+ G     KRE+AAF AH++  T              LC+I     + N +C   +  +PC  GK Y  RGPIQLT N NYG AG+AIG D ++ P+ V KDP++SFKTALWFWM+      + H ++     A  +  N  V         G    A   + IG+YK YC
Sbjct:  133 VVTEPLFDQMFSHRK-DCPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVENPHAWGLCHINTTTVTENDFCTSSD--WPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVLNANSAANRIPNKGVIGNIISRAFGHDDFAVRSSSIGFYKRYC 340          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.192e-21
Identity = 70/202 (34.65%), Postives = 92/202 (45.54%), Query Frame = 2
Query:  137 FFDGIKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGHLCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMNQ---------------GFGATIQRINGAVECGGKQPAQV-QARIGYYKDYC 673
            F D +K +    C    FYT +AF++AAK +P FG+ G   + KREIAAF    +HET                   N  +P   G   Y  G   +  N NYG  G  +    L+ PE V  DP ++FKTALWFWMT      + H V+ +               G+G     ING +ECG   P    + RIG+YK YC
Sbjct:   94 FDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHET-------------------NGWWPAAQGD-QYDWGYCHM--NYNYGLCGDDLNLPLLQEPELVETDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYC 273          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: IAMY_COILA (Alpha-amylase inhibitor/endochitinase (Fragments) OS=Coix lachryma-jobi PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.050e-20
Identity = 55/130 (42.31%), Postives = 66/130 (50.77%), Query Frame = 2
Query:  284 FAHVTHETGHLCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMNQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            FAHVTHETG+          N YCD    Q PC  GK YYGRGPIQ++ N NYG AG+AIG DGL  P+ VA+D +  +KTAL F                   +NG     G   A     + YY+ YC
Sbjct:   24 FAHVTHETGN----------NAYCDPSKTQKPCAAGKKYYGRGPIQISXNYNYGPAGRAIGMDGLGNPDRVAQDALDDYKTALXF------------------LVNGEEAVPGLSAANA---VSYYRQYC 122          
The following BLAST results are available for this feature:
BLAST of CF835723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI8_POPTR1.978e-3038.68Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIT_AVESA3.373e-3042.93Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI11_ORYSJ4.406e-3040.09Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
AGI_URTDI5.954e-2736.97Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHIB_POPTR2.192e-2134.65Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
IAMY_COILA7.050e-2042.31Alpha-amylase inhibitor/endochitinase (Fragments) ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835723 ID=CF835723; Name=CF835723; organism=Citrus sinensis; type=EST; length=673bp
TTTCTCTACTCCTAATAAAATGGCTCCACTTAACATGAAAAAAAATATTG
TAACCTTTGCTCTTGTGGGCATTCTTGCCCTAGCTTTTCCCACCAAAGTA
ATGTGTCAAAATGTTGCTAGCATTGTGACTCCCCAGTTCTTCGACGGCAT
AAAGAATCAGGCAGCCGCGAGTTGTGCCGGCAAGAGCTTCTACACGAGAG
ATGCGTTTCTGAATGCTGCCAAGGCTTATCCTCAATTTGGTAGCGGCTCT
CCTGAAGTTTCGAAGCGTGAGATTGCTGCATTTTTTGCACACGTCACTCA
TGAAACTGGACATTTGTGCTACATAGAAGAGATTAACAAGTCCAACCGGT
ACTGTGATGAACAAAACAAACAGTACCCATGTGTTCCCGGAAAGTTCTAC
TACGGCCGTGGACCGATCCAACTCACCGGAAATGGAAACTACGGAGCTGC
CGGAAAAGCCATCGGGTTTGACGGATTAAGAGCTCCGGAAACGGTGGCCA
AGGACCCCGTTGTGTCATTTAAGACTGCCTTGTGGTTTTGGATGACCAAT
GTGCACCCAGTTATGAACCAAGGTTTTGGTGCAACAATTCAGAGAATCAA
TGGTGCCGTTGAATGCGGTGGCAAGCAACCTGCTCAGGTTCAAGCTCGCA
TTGGATATTATAAGGATTATTGC
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