CF835909

Overview
NameCF835909
Unique NameCF835909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12605 contig Csv1_Contig12605:82..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDHC_PIG (Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN=MDH1 PE=1 SV=4)

HSP 1 Score: 236.498 bits (602), Expect = 1.090e-61
Identity = 120/211 (56.87%), Postives = 150/211 (71.09%), Query Frame = 3
Query:   87 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A PL+K V+AT     A   +++A++VG  PR++GMERKD++  NV I+K Q +AL+++A  + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVIIWGNHSS+QYPDVNHA V   A E  V E V
Sbjct:    3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAV 213          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDHC_HUMAN (Malate dehydrogenase, cytoplasmic OS=Homo sapiens GN=MDH1 PE=1 SV=4)

HSP 1 Score: 236.498 bits (602), Expect = 1.090e-61
Identity = 119/209 (56.94%), Postives = 150/209 (71.77%), Query Frame = 3
Query:   87 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRE 713
            EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A PL+K V+AT     A   +++A++VG  PR+EGMERKD++  NV I+K+Q +AL+++A  + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V  +DVKNVIIWGNHSS+QYPDVNHA V     E  V E
Sbjct:    3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTANDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYE 211          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDHC_MOUSE (Malate dehydrogenase, cytoplasmic OS=Mus musculus GN=Mdh1 PE=1 SV=3)

HSP 1 Score: 236.113 bits (601), Expect = 1.424e-61
Identity = 120/209 (57.42%), Postives = 149/209 (71.29%), Query Frame = 3
Query:   87 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRE 713
            EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A PL++ V+AT     A   +++AV+VG  PR+EGMERKD++  NV I+K+Q +ALE++A  + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVIIWGNHSS+QYPDVNHA V     E  V E
Sbjct:    3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLQDVIATDKEEIAFKDLDVAVLVGSMPRREGMERKDLLKANVKIFKSQGTALEKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKSQIALKLGVTADDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYE 211          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDHC_ECHGR (Malate dehydrogenase, cytoplasmic OS=Echinococcus granulosus GN=MDH PE=2 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 3.173e-61
Identity = 114/210 (54.29%), Postives = 151/210 (71.90%), Query Frame = 3
Query:   90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            P+RVL+TGAAGQI Y L  M+A G + G DQ +ILH+LDIP A   L+GV MEL D AF ++ G+V T    EA T +++A+MVG  PRK+GMER+D++S NV I+K Q  AL+++A    KVLVV NPANTN LI+ ++APSIP +N T LTRLDHNRA+ Q++ K  V  + VKNV IWGNHS+ Q+PD++HA V     + P +EL+
Sbjct:    4 PLRVLITGAAGQIAYNLSNMVANGNLFGKDQQIILHLLDIPEAKTVLDGVVMELQDCAFTVLAGIVPTHCLKEAFTDIDVALMVGAMPRKQGMERRDLLSSNVKIFKEQGEALDKYAKKTVKVLVVGNPANTNCLIMSKYAPSIPKENFTALTRLDHNRAIYQVAAKAGVPNTCVKNVCIWGNHSNKQFPDLSHAVVTKDGKQHPAKELI 213          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDHC_BOVIN (Malate dehydrogenase, cytoplasmic OS=Bos taurus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 233.802 bits (595), Expect = 7.068e-61
Identity = 118/209 (56.46%), Postives = 148/209 (70.81%), Query Frame = 3
Query:   87 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRE 713
            EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A PL+K V+AT     A   +++A++VG  PR++GMERKD++  NV I+K Q +AL+++A  + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVIIWGNHSS+QYPDVNHA V     E  V E
Sbjct:    3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYE 211          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDHC_FELCA (Malate dehydrogenase, cytoplasmic OS=Felis catus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 7.815e-60
Identity = 115/198 (58.08%), Postives = 145/198 (73.23%), Query Frame = 3
Query:   87 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A PL+K V+AT     A   +++A++VG  PR++GMERKD++  NV I+K Q +ALE++A  + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVIIWGNHSS+QYPDV+HA V
Sbjct:    3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEDVAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALEKYAKKSVKVIVVGNPANTNCLTACKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVSHAKV 200          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDHC_DICDI (Probable malate dehydrogenase 3 OS=Dictyostelium discoideum GN=mdhC PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.815e-60
Identity = 113/210 (53.81%), Postives = 144/210 (68.57%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPV 707
            M+ E + VL+TGAAGQI Y+L+  + +G M G DQ + LH+LDIP   ++L G+ ME+ D A+PLI   V T D  EA TGV+ A++VG  PR+EGMER D++  N +I+K Q  AL +HA  N KVLVV NPANTNALI +  A  IP +N TCLTRLD NRA  QI+ K  V V DV NVIIWGNHSS+QYPD     +N + G+ P+
Sbjct:    1 MSNEVINVLITGAAGQIAYSLIFNVCKGDMFGLDQRIKLHLLDIPQMVDSLKGIVMEIQDGAYPLIADTVITADVKEAFTGVHYAILVGAMPRREGMERADLLKANAAIFKVQGKALAEHANKNVKVLVVGNPANTNALIAQVSANGIPKENFTCLTRLDQNRAKSQIALKAGVNVKDVHNVIIWGNHSSTQYPDYRCGYINLSTGKTPI 210          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDHC_XENLA (Malate dehydrogenase, cytoplasmic OS=Xenopus laevis GN=mdh1 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.333e-59
Identity = 115/198 (58.08%), Postives = 147/198 (74.24%), Query Frame = 3
Query:   87 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            EPV+VLVTGAAGQI Y+L+  IA+G + G DQP+IL +LDI P    L GV MEL D A PL+K V+AT     A   +++A++VG  PR+EGMERKD++  NV I+K+Q +AL +++  + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KLNV   DVKNVIIWGNHSS+QYPD +HA+V
Sbjct:    3 EPVKVLVTGAAGQIAYSLLFGIAKGDVFGKDQPLILVLLDITPMMTVLEGVVMELQDCALPLLKEVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALNKYSKKSVKVIVVGNPANTNCLTALKSAPSIPKENFSCLTRLDHNRAKAQIALKLNVASDDVKNVIIWGNHSSTQYPDASHASV 200          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_DEIRA (Malate dehydrogenase OS=Deinococcus radiodurans GN=mdh PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 5.066e-59
Identity = 117/200 (58.50%), Postives = 144/200 (72.00%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            K+PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +L+I PA +ALNGV MEL D AFPL+  V+ + D + A    + A++VG  PRK GMER D++  N  I+K Q  AL   A+ N KVLVV NPANTNALI ++ AP +  K  T + RLDHNRAL Q++EK    VSD+KNV IWGNHSS+QYPD++ ATVN
Sbjct:    4 KQPVRVAVTGAAGQIGYSLLFRIAAGDMLGQDQPVILQLLEITPALKALNGVVMELRDGAFPLLADVITSDDPMVAFKDADYALLVGAMPRKAGMERGDLLGANGGIFKPQGEALGAVASRNVKVLVVGNPANTNALIAQQNAPDLDPKCFTAMVRLDHNRALSQLAEKTGAAVSDIKNVTIWGNHSSTQYPDLSQATVN 203          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_THEFY (Malate dehydrogenase OS=Thermobifida fusca (strain YX) GN=mdh PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.128e-58
Identity = 116/212 (54.72%), Postives = 147/212 (69.34%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRE 713
            MAK PV V VTGAAGQIGYAL+  IA G +LG D PV L +L+IP A +A  G  MEL D AFPL+ GV    D  +A  GVN+A++VG  PR +GMER+D++  N  I+  Q +A+   AA + +VLVV NPANTNALI +  AP IPA   T +TRLDHNRAL Q++ KLNV VSD+K + IWGNHS++QYPD+ HA VN  +  + V +
Sbjct:    1 MAKAPVNVTVTGAAGQIGYALLFRIASGQLLGVDTPVRLRLLEIPQAIKAAEGTAMELDDCAFPLLAGVDIYDDPRKAFDGVNVALLVGARPRTKGMERRDLLEANGGIFGPQGAAINDGAADDVRVLVVGNPANTNALIAQAHAPDIPADRFTAMTRLDHNRALSQLAAKLNVSVSDIKKLTIWGNHSATQYPDIFHAEVNGRSAVEAVND 212          
The following BLAST results are available for this feature:
BLAST of CF835909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
MDHC_PIG1.090e-6156.87Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN... [more]
MDHC_HUMAN1.090e-6156.94Malate dehydrogenase, cytoplasmic OS=Homo sapiens ... [more]
MDHC_MOUSE1.424e-6157.42Malate dehydrogenase, cytoplasmic OS=Mus musculus ... [more]
MDHC_ECHGR3.173e-6154.29Malate dehydrogenase, cytoplasmic OS=Echinococcus ... [more]
MDHC_BOVIN7.068e-6156.46Malate dehydrogenase, cytoplasmic OS=Bos taurus GN... [more]
MDHC_FELCA7.815e-6058.08Malate dehydrogenase, cytoplasmic OS=Felis catus G... [more]
MDHC_DICDI7.815e-6053.81Probable malate dehydrogenase 3 OS=Dictyostelium d... [more]
MDHC_XENLA1.333e-5958.08Malate dehydrogenase, cytoplasmic OS=Xenopus laevi... [more]
MDH_DEIRA5.066e-5958.50Malate dehydrogenase OS=Deinococcus radiodurans GN... [more]
MDH_THEFY1.128e-5854.72Malate dehydrogenase OS=Thermobifida fusca (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835909 ID=CF835909; Name=CF835909; organism=Citrus sinensis; type=EST; length=719bp
CTCCATCGAACCTCTCCTTCTCTCGCTTTACTGGAAAAATCTTTTCGTTT
CCCGTGATACATCTCTGATCCGAATTAATGGCCAAGGAACCAGTTCGCGT
TCTTGTCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGA
TTGCTAGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATG
CTTGATATACCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTT
GGTTGATGCTGCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATG
CTGTTGAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTT
CCAAGAAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTC
AATCTACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACT
GCAAGGTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTG
AAAGAATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAG
ATTGGATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCC
AAGTATCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCT
CAGTACCCTGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAA
ACCTGTCCGTGAGCTTGTC
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