CF835909

Overview
NameCF835909
Unique NameCF835909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12605 contig Csv1_Contig12605:82..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_PSYWF (Malate dehydrogenase OS=Psychrobacter sp. (strain PRwf-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.925e-58
Identity = 114/200 (57.00%), Postives = 143/200 (71.50%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            K+PVRV VTGAAG I YA++  IA G MLG DQPVIL +L+I PA +AL GV MEL D AFPL+ GVV T DA  A    + A++VG  PR  GMERKD++  N +I+ AQ  AL + A+ + KVLVV NPANTNALI +  AP +  +N T +TRLDHNR + Q++E+ N  V+DVK +IIWGNHSS+QYPD+   TVN
Sbjct:    2 KQPVRVAVTGAAGNISYAMLFRIASGEMLGKDQPVILQLLEITPALDALKGVVMELEDCAFPLLAGVVQTDDATVAFKDADYALLVGARPRGPGMERKDLLEANAAIFSAQGKALNEVASRDVKVLVVGNPANTNALIAQRNAPDLDPRNFTAMTRLDHNRGMAQLAEETNSTVNDVKKMIIWGNHSSTQYPDLTECTVN 201          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDHA_DICDI (Probable malate dehydrogenase 1 OS=Dictyostelium discoideum GN=mdhA PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.283e-58
Identity = 113/197 (57.36%), Postives = 140/197 (71.07%), Query Frame = 3
Query:   90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            P++VLVTGAAGQI Y+L+ MIA G M G  QPVILH+LDIP  A+AL GV MEL D ++PL++ VVATTD   A   +N+A++VG FPR  GM+RKD++  NVSI+K Q  AL ++A+   KVLVV NPANTNAL     A  +P  N + LTRLD NRA   ISEK+   V +V NVIIWGNHS +Q PDVNH  +
Sbjct:   61 PIKVLVTGAAGQIAYSLMFMIASGQMFGPHQPVILHLLDIPKMADALKGVVMELQDCSYPLLQSVVATTDIQTAFLHINVAILVGAFPRGPGMQRKDLLKVNVSIFKEQGEALNKYASRGVKVLVVGNPANTNALTALMKASDLPTSNFSALTRLDQNRAQSMISEKVGTNVDNVHNVIIWGNHSQTQVPDVNHGYI 257          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_PSYCK (Malate dehydrogenase OS=Psychrobacter cryohalolentis (strain K5) GN=mdh PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.288e-58
Identity = 118/212 (55.66%), Postives = 149/212 (70.28%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            K+PVRV VTGAAG I YA++  IA G MLG DQPVIL +L+I PA +AL GV MEL D AFPL+ GVV T DA  A   V+ A++VG  PR  GMERKD++  N +I+ AQ  AL   A+ + KVLVV NPANTNA+I +  AP +  +N T +TRLDHNRA+ Q++ K +  V+DVK +IIWGNHSS+QYPD+  +TVN     KP  +LV
Sbjct:    4 KQPVRVAVTGAAGNISYAMLFRIASGEMLGKDQPVILQLLEIAPALDALKGVVMELEDCAFPLLAGVVQTDDATVAFKDVDYALLVGSRPRGPGMERKDLLEANAAIFSAQGKALNDVASRDVKVLVVGNPANTNAVIAQRNAPDLDPRNFTAMTRLDHNRAMAQLAGKTDSTVNDVKKMIIWGNHSSTQYPDLTASTVN----GKPALDLV 211          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_ALCBS (Malate dehydrogenase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=mdh PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.288e-58
Identity = 113/203 (55.67%), Postives = 143/203 (70.44%), Query Frame = 3
Query:   75 LMAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            +  K PVRV VTGAAGQI Y+L+  IA G MLG DQPVIL +L+I PA EALNGV MEL D AFPL+ G+  T DA  A    + A++VG  PR  GMERKD++  N +I+ AQ  A+  +A+   KVLVV NPANTNALI +  AP I  +  T +TRLDHNRA+ Q++ KL   V+DVK ++IWGNHSS+QYPD++H  V+
Sbjct:    1 MFMKAPVRVAVTGAAGQISYSLLFRIASGDMLGKDQPVILQLLEITPALEALNGVIMELEDCAFPLVAGITGTDDANVAFKDADYALLVGARPRGPGMERKDLLEANAAIFSAQGKAINDNASKGIKVLVVGNPANTNALIAQRNAPDIDPRQFTAMTRLDHNRAMAQLANKLGKTVNDVKKMLIWGNHSSTQYPDLHHCEVD 203          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_PSYA2 (Malate dehydrogenase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=mdh PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.601e-58
Identity = 114/200 (57.00%), Postives = 144/200 (72.00%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            K+PVRV VTGAAG I YA++  IA G MLG DQPVIL +L+I PA +AL GV MEL D AFPL+ G+V T DA  A   V+ A++VG  PR  GMERKD++  N +I+ AQ  AL   A+ + KVLVV NPANTNALI +  AP +  +N T +TRLDHNRA+ Q++ K +  V+DVK +IIWGNHSS+QYPD+  +TVN
Sbjct:    4 KQPVRVAVTGAAGNISYAMLFRIASGEMLGKDQPVILQLLEIAPALDALKGVVMELEDCAFPLLAGIVQTDDATVAFKDVDYALLVGSRPRGPGMERKDLLEANAAIFSAQGKALNDVASRDVKVLVVGNPANTNALIAQRNAPDLDPRNFTAMTRLDHNRAMAQLAGKTDSTVNDVKKMIIWGNHSSTQYPDLTASTVN 203          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_SACEN (Malate dehydrogenase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=mdh PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.780e-57
Identity = 110/202 (54.46%), Postives = 143/202 (70.79%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            M + PV V VTGAAGQIGYAL+  IA G ++G D PV L +L+IP A +A  G  MEL D AFPL++G+  T DA  A  G N+A++VG  PR +GMER D++  N  I+K Q  A+   AA + +VLVV NPANTNALI +  AP +PA+  T +TRLDHNRAL Q+++KL V V+D+K + IWGNHS++QYPD+ HA VN
Sbjct:    1 MTQAPVTVTVTGAAGQIGYALLFRIASGQLIGPDTPVRLRLLEIPQAVKAAEGTAMELDDCAFPLLQGIEVTDDARTAFDGTNVALLVGARPRTKGMERGDLLEANGGIFKPQGEAINAGAADDVRVLVVGNPANTNALIAQAHAPDVPAERFTAMTRLDHNRALTQLAQKLGVSVNDIKKLTIWGNHSATQYPDLFHAEVN 202          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_STRCO (Malate dehydrogenase OS=Streptomyces coelicolor GN=mdh PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.741e-57
Identity = 110/201 (54.73%), Postives = 141/201 (70.15%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            M + PV V VTGAAGQIGYAL+  IA G +LG D PV L +L+I PA +A  G  MEL D AFPL++G+  T D   A  G N+A++VG  PR +GMER D++  N  I+K Q  A+  HAA + KVLVV NPANTNALI +  AP +PA+  T +TRLDHNRAL Q+++K    V+D+K + IWGNHS++QYPD+ HATV
Sbjct:    1 MTRTPVNVTVTGAAGQIGYALLFRIASGQLLGADVPVKLRLLEITPALKAAEGTAMELDDCAFPLLQGIEITDDPNVAFDGANVALLVGARPRTKGMERGDLLEANGGIFKPQGKAINDHAADDIKVLVVGNPANTNALIAQAAAPDVPAERFTAMTRLDHNRALTQLAKKTGSTVADIKRLTIWGNHSATQYPDIFHATV 201          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_DEIDV (Malate dehydrogenase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=mdh PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.192e-57
Identity = 115/212 (54.25%), Postives = 148/212 (69.81%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            K+PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +L+I PA +AL GV MEL D A+PL+  VV + D + A    + A++VG  PRK GMER D++  N  I+K Q  AL Q A+ + KVLVV NPANTNALI ++ AP +  +  T + RLDHNRA+ Q++EK    VS +KN+ IWGNHSS+QYPD++ ATV    G +P  +LV
Sbjct:    4 KQPVRVAVTGAAGQIGYSLLFRIAAGDMLGKDQPVILQLLEITPALKALQGVVMELRDGAYPLLADVVTSDDPLVAFKDADYALLVGAMPRKAGMERGDLLGANGGIFKPQGQALNQVASRDVKVLVVGNPANTNALIAQQNAPDLDPRQFTAMVRLDHNRAISQLAEKTGQPVSAIKNITIWGNHSSTQYPDLSQATV----GGRPALDLV 211          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_POLSQ (Malate dehydrogenase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.087e-57
Identity = 112/204 (54.90%), Postives = 144/204 (70.59%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            MAK P+RV VTGAAGQIGY+L+  IA G +LG DQPVIL +L+IP   A +AL GV MEL D AFPL+ G+ A +D + A   +++A++VG  PR  GMERKD++S N  I+ AQ  AL   A    KVLVV NPANTNA I  + AP IPAKN T + RLDHNRAL Q++ KLN  V+D++ +++WGNHS + YPD   AT++
Sbjct:    1 MAKAPMRVAVTGAAGQIGYSLLFRIANGDLLGKDQPVILQLLEIPDEKAQKALTGVMMELEDCAFPLLAGMTAHSDPMTAFKDIDVALLVGARPRGPGMERKDLLSANAQIFTAQGKALNAVAKKTVKVLVVGNPANTNAYIAMKSAPDIPAKNFTAMLRLDHNRALSQLANKLNKPVADIEKLVVWGNHSPTMYPDYRFATID 204          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_DEIGD (Malate dehydrogenase OS=Deinococcus geothermalis (strain DSM 11300) GN=mdh PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.087e-57
Identity = 112/200 (56.00%), Postives = 143/200 (71.50%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            K+PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +L+I PA +AL GV MEL D AFPL+  +V + D + A    + A++VG  PRK GMER D++  N  I+K Q  AL + A+ + KVLVV NPANTNALI ++ AP +  K  T + RLDHNRA+ Q++EK    VS +KN+ IWGNHSS+QYPD++ ATVN
Sbjct:    8 KQPVRVAVTGAAGQIGYSLLFRIAAGDMLGKDQPVILQLLEITPALKALAGVVMELRDCAFPLLADIVTSDDPLVAFKDADYALLVGAMPRKAGMERGDLLGANGGIFKPQGEALNKVASRDVKVLVVGNPANTNALIAQQNAPDLDPKQFTAMVRLDHNRAISQLAEKTGQPVSAIKNITIWGNHSSTQYPDLSQATVN 207          
The following BLAST results are available for this feature:
BLAST of CF835909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
MDH_PSYWF1.925e-5857.00Malate dehydrogenase OS=Psychrobacter sp. (strain ... [more]
MDHA_DICDI3.283e-5857.36Probable malate dehydrogenase 1 OS=Dictyostelium d... [more]
MDH_PSYCK4.288e-5855.66Malate dehydrogenase OS=Psychrobacter cryohalolent... [more]
MDH_ALCBS4.288e-5855.67Malate dehydrogenase OS=Alcanivorax borkumensis (s... [more]
MDH_PSYA25.601e-5857.00Malate dehydrogenase OS=Psychrobacter arcticus (st... [more]
MDH_SACEN2.780e-5754.46Malate dehydrogenase OS=Saccharopolyspora erythrae... [more]
MDH_STRCO4.741e-5754.73Malate dehydrogenase OS=Streptomyces coelicolor GN... [more]
MDH_DEIDV6.192e-5754.25Malate dehydrogenase OS=Deinococcus deserti (strai... [more]
MDH_POLSQ8.087e-5754.90Malate dehydrogenase OS=Polynucleobacter sp. (stra... [more]
MDH_DEIGD8.087e-5756.00Malate dehydrogenase OS=Deinococcus geothermalis (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835909 ID=CF835909; Name=CF835909; organism=Citrus sinensis; type=EST; length=719bp
CTCCATCGAACCTCTCCTTCTCTCGCTTTACTGGAAAAATCTTTTCGTTT
CCCGTGATACATCTCTGATCCGAATTAATGGCCAAGGAACCAGTTCGCGT
TCTTGTCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGA
TTGCTAGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATG
CTTGATATACCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTT
GGTTGATGCTGCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATG
CTGTTGAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTT
CCAAGAAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTC
AATCTACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACT
GCAAGGTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTG
AAAGAATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAG
ATTGGATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCC
AAGTATCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCT
CAGTACCCTGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAA
ACCTGTCCGTGAGCTTGTC
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