CF835909

Overview
NameCF835909
Unique NameCF835909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12605 contig Csv1_Contig12605:82..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_RHOS4 (Malate dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=mdh PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 50/189 (26.46%), Postives = 91/189 (48.15%), Query Frame = 3 
Query:  117 AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            AGQIG  L  + A   +      V+  + +  P  +AL+  +    +    ++KG     ++ E   G ++ ++  G PRK GM R D++  N+ + K+    ++ HA PN  V+ + NP +     L++F+  +PA+ +  +   LD  R    +S + NV + DV    + G H  +  P V ++TV
Sbjct:   11 AGQIGGTLAHLAA---IKELGDVVLFDIAEGTPQGKALDIAQSGPSEGFDAVMKGA----NSYEEIAGADVCIVTAGVPRKPGMSRDDLIGINLKVMKSVGEGIKAHA-PNAFVICITNPLDAMVWALQQFS-GLPAEKVVGMAGVLDSARFRHFLSVEFNVSMRDV-TAFVLGGHGDTMVPLVRYSTV 189
[Close]
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_RHOS1 (Malate dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=mdh PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 50/189 (26.46%), Postives = 91/189 (48.15%), Query Frame = 3 
Query:  117 AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            AGQIG  L  + A   +      V+  + +  P  +AL+  +    +    ++KG     ++ E   G ++ ++  G PRK GM R D++  N+ + K+    ++ HA PN  V+ + NP +     L++F+  +PA+ +  +   LD  R    +S + NV + DV    + G H  +  P V ++TV
Sbjct:   11 AGQIGGTLAHLAA---IKELGDVVLFDIAEGTPQGKALDIAQSGPSEGFDAVMKGA----NSYEEIAGADVCIVTAGVPRKPGMSRDDLIGINLKVMKSVGEGIKAHA-PNAFVICITNPLDAMVWALQQFS-GLPAEKVVGMAGVLDSARFRHFLSVEFNVSMRDV-TAFVLGGHGDTMVPLVRYSTV 189
The following BLAST results are available for this feature:
BLAST of CF835909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
MDH_RHOS48.761e-1126.46Malate dehydrogenase OS=Rhodobacter sphaeroides (s... [more]
MDH_RHOS18.761e-1126.46Malate dehydrogenase OS=Rhodobacter sphaeroides (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835909 ID=CF835909; Name=CF835909; organism=Citrus sinensis; type=EST; length=719bp
CTCCATCGAACCTCTCCTTCTCTCGCTTTACTGGAAAAATCTTTTCGTTT
CCCGTGATACATCTCTGATCCGAATTAATGGCCAAGGAACCAGTTCGCGT
TCTTGTCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGA
TTGCTAGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATG
CTTGATATACCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTT
GGTTGATGCTGCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATG
CTGTTGAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTT
CCAAGAAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTC
AATCTACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACT
GCAAGGTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTG
AAAGAATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAG
ATTGGATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCC
AAGTATCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCT
CAGTACCCTGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAA
ACCTGTCCGTGAGCTTGTC
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