CF835909

Overview
NameCF835909
Unique NameCF835909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12605 contig Csv1_Contig12605:82..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_POLNS (Malate dehydrogenase OS=Polynucleobacter necessarius (strain STIR1) GN=mdh PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.802e-56
Identity = 112/204 (54.90%), Postives = 144/204 (70.59%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            MAK P+RV VTGAAGQIGY+L+  IA G +LG DQPVIL +L+IP   A +AL GV MEL D AFPL+ G+ A +D + A   +++A++VG  PR  GMERKD++S N  I+ AQ  AL   A    KVLVV NPANTNA I  + AP IPAKN T + RLDHNRAL Q++ KLN  V+D++ +++WGNHS + YPD   AT++
Sbjct:    1 MAKAPMRVAVTGAAGQIGYSLLFRIANGDLLGKDQPVILQLLEIPDEKAQKALAGVMMELEDCAFPLLAGMTAHSDPMTAFKDIDVALLVGARPRGPGMERKDLLSANAQIFTAQGKALNVVAKKTVKVLVVGNPANTNAYIAMKSAPDIPAKNFTAMLRLDHNRALSQLANKLNKPVADIEKLVVWGNHSPTMYPDYRFATID 204          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_FRASC (Malate dehydrogenase OS=Frankia sp. (strain CcI3) GN=mdh PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.802e-56
Identity = 109/210 (51.90%), Postives = 144/210 (68.57%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPV 707
            M+  PV V VTGAAGQIGYAL+  IA G +LG D PV L +L+IP A  A  G  +EL D+AFPL+ GV    DA  A  G N+A++VG  PR +GMER D++S N  I+K Q  A+   AA + +VLVV NPANTNALI +  AP +PA+  T +TRLDHNRA+ Q+++KL V  +++K + IWGNHS++QYPD+ HA V   +G + V
Sbjct:    1 MSSTPVNVTVTGAAGQIGYALLFRIASGQLLGADTPVKLRLLEIPQAVRAAEGTALELEDSAFPLLAGVDVFDDAKRAFEGTNVALLVGARPRTKGMERGDLLSANGGIFKPQGEAINSGAAEDIRVLVVGNPANTNALIAQTHAPDVPAERFTAMTRLDHNRAIAQLAKKLGVPSAEIKKITIWGNHSATQYPDIFHAEVGGRSGAEAV 210          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_ALHEH (Malate dehydrogenase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.802e-56
Identity = 110/203 (54.19%), Postives = 142/203 (69.95%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAA 692
            K PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +L+I PA EAL GV MEL D AFPL+ G+  +  A EA    +IA++VG  PR  GMERKD++  N +I+ AQ  AL   A+ + KVLVV NPANTN+LI +  AP +  +N T +TRLDHNRA+ Q++ K     +++KN+IIWGNHS++QYPD++   V   A
Sbjct:    2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEITPALEALKGVVMELEDCAFPLVSGITTSDKAEEAFKDADIALLVGARPRGPGMERKDLLEANAAIFSAQGKALNDAASRDVKVLVVGNPANTNSLIAQRNAPDLDPRNFTAMTRLDHNRAVAQLANKTGAHNTEIKNMIIWGNHSATQYPDISKTKVKGEA 204          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_RALEH (Malate dehydrogenase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=mdh PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.073e-56
Identity = 112/214 (52.34%), Postives = 147/214 (68.69%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            MAK P+RV VTGAAGQIGY+L+  IA G MLG DQPVIL +LD+P A +A+ GV MEL D AFPL+ GVV T D   A    ++A++VG  PR +GMERKD++  N  I+  Q  AL++ A+ N KVLVV NPANTNA I  + AP++P +N T + RLDHNRAL QI+ K    VS ++ + +WGNHS + Y D  +ATV+     K V++L+
Sbjct:    1 MAKAPMRVAVTGAAGQIGYSLLFRIANGDMLGKDQPVILQLLDLPQAQQAVKGVVMELEDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLEANAQIFTVQGKALDEVASRNVKVLVVGNPANTNAYIAMKSAPNLPRENFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYATVD----GKSVKDLI 210          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_FRAAA (Malate dehydrogenase OS=Frankia alni (strain ACN14a) GN=mdh PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.014e-56
Identity = 108/210 (51.43%), Postives = 144/210 (68.57%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPV 707
            M+  PV V VTGAAGQIGYAL+  IA G +LG D PV L +L+IP A  A  G  +EL D+AFPL+ GV    DA  A  G N+A++VG  PR +GMER D++S N  I+K Q  A+   AA + +VLVV NPANTNALI +  AP +PA+  T +TRLDHNRA+ Q+++KL V  ++++ + IWGNHS++QYPD+ HA V   +G + V
Sbjct:    1 MSSTPVNVTVTGAAGQIGYALLFRIASGQLLGADTPVRLRLLEIPQAVRAAEGTALELEDSAFPLLAGVDVFDDAKRAFEGTNVALLVGARPRTKGMERGDLLSANGGIFKPQGEAINSGAAEDIRVLVVGNPANTNALIAQTHAPDVPAERFTAMTRLDHNRAIAQLAKKLGVPSAEIRKITIWGNHSATQYPDIFHAQVGGRSGAEAV 210          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_TERTT (Malate dehydrogenase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=mdh PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.242e-56
Identity = 110/199 (55.28%), Postives = 137/199 (68.84%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            K PVRV VTGAAGQI Y+L+  IA G MLG DQPVIL ML+I PA EAL GV MEL D AFPL+  +V T DA  A    + A++VG  PR  GMER D++  N +I+  Q  A+  HA+   KVLVV NPANTNALI +  AP I  +  T +TRLDHNR + Q++ KL+V ++D+  + IWGNHSS+QYPD+ HA V
Sbjct:    2 KAPVRVTVTGAAGQISYSLLFRIAAGEMLGADQPVILQMLEITPALEALKGVAMELDDCAFPLLHSMVCTDDANVAFKDSDYALLVGARPRGPGMERNDLLEANAAIFSVQGKAINDHASRGIKVLVVGNPANTNALIAQRNAPDIDPRQFTAMTRLDHNRGMSQLASKLDVSINDITKMTIWGNHSSTQYPDLYHALV 200          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_CUPTR (Malate dehydrogenase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=mdh PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.242e-56
Identity = 109/202 (53.96%), Postives = 141/202 (69.80%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            MAK P+RV VTGAAGQIGY+L+  IA G MLG DQPVIL +LD+P A +A+ GV MEL D AFPL+ GVV T D   A    ++A++VG  PR +GMERKD++  N  I+  Q  AL++ A+ N KVLVV NPANTNA I  + AP++P +N T + RLDHNRAL QI+ K    VS ++ + +WGNHS + Y D  +ATV+
Sbjct:    1 MAKAPMRVAVTGAAGQIGYSLLFRIANGDMLGKDQPVILQLLDLPQAQQAVKGVVMELEDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLEANAQIFTVQGKALDEVASRNVKVLVVGNPANTNAYIAMKSAPNLPRENFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYATVD 202          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_NITEC (Malate dehydrogenase OS=Nitrosomonas eutropha (strain C91) GN=mdh PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.846e-56
Identity = 106/197 (53.81%), Postives = 145/197 (73.60%), Query Frame = 3
Query:   90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            PVR+ VTGAAGQI Y+L+  IA G MLG++QPVIL +LDIP + + L+GV MEL D AFPL+ G++AT D + A    +IA++VG  PR++GMERKD++  N  I++ Q   L Q A  + K+LVV NPANTN LI  + AP +PA+N + + RLDHNRAL Q++ KLN  VS++K +I+WGNHSS+Q+PD+ HA +
Sbjct:    4 PVRITVTGAAGQISYSLLFRIAAGDMLGSNQPVILQLLDIPESRKILDGVVMELQDCAFPLLAGIIATHDPMMAFDQTDIAILVGARPRRKGMERKDLLQTNGEIFRNQGKILNQVAKRDAKILVVGNPANTNTLITMKNAPDLPAENFSGMLRLDHNRALSQVAMKLNQPVSNIKKMIVWGNHSSTQFPDLYHAEI 200          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_HALHL (Malate dehydrogenase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=mdh PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.846e-56
Identity = 106/199 (53.27%), Postives = 138/199 (69.35%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            K PVRV VTGAAGQIGY+L+  IA G MLG DQPV L +L+IP A EAL G  MEL D AFPL+ G++AT  A EA    +  ++VG  PR  GMERKD++  N +I+ AQ  AL   A  + KVL V NPANTNALI +  AP +  +N T +TRLDHNRAL Q+S K+    ++++ + +WGNHS++QYPD++H T+
Sbjct:    2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVTLQLLEIPQAQEALQGTVMELEDCAFPLVDGIIATDSAEEAFRDADYVLLVGAKPRGPGMERKDLLEANAAIFSAQGQALNAVAKRDVKVLAVGNPANTNALITQRNAPDLDPRNFTAMTRLDHNRALAQLSNKVGCHSTEIRGLAVWGNHSATQYPDISHCTI 200          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_STRGG (Malate dehydrogenase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=mdh PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.941e-56
Identity = 106/201 (52.74%), Postives = 138/201 (68.66%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            M + PV V VTGAAGQIGYAL+  IA G +LG D PV L +L+IP   +A  G  MEL D AFPL++G+  T D      G N+A++VG  PR +GMER D+++ N  I+K Q  A+  HAA + KVLVV NPANTNALI +  AP +PA+  T +TRLDHNRA+ Q++ K    VSD+K + IWGNHS++QYPD+ HA +
Sbjct:    1 MTRTPVNVTVTGAAGQIGYALLFRIASGHLLGPDVPVNLRLLEIPQGLKAAEGTAMELDDCAFPLLRGIEITDDPNVGFAGANVALLVGARPRTKGMERGDLLAANGGIFKPQGKAINDHAADDIKVLVVGNPANTNALIAQAAAPDVPAERFTAMTRLDHNRAISQLAAKTGAAVSDIKKLTIWGNHSATQYPDIFHAEI 201          
The following BLAST results are available for this feature:
BLAST of CF835909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
MDH_POLNS1.802e-5654.90Malate dehydrogenase OS=Polynucleobacter necessari... [more]
MDH_FRASC1.802e-5651.90Malate dehydrogenase OS=Frankia sp. (strain CcI3) ... [more]
MDH_ALHEH1.802e-5654.19Malate dehydrogenase OS=Alkalilimnicola ehrlichei ... [more]
MDH_RALEH3.073e-5652.34Malate dehydrogenase OS=Ralstonia eutropha (strain... [more]
MDH_FRAAA4.014e-5651.43Malate dehydrogenase OS=Frankia alni (strain ACN14... [more]
MDH_TERTT5.242e-5655.28Malate dehydrogenase OS=Teredinibacter turnerae (s... [more]
MDH_CUPTR5.242e-5653.96Malate dehydrogenase OS=Cupriavidus taiwanensis (s... [more]
MDH_NITEC6.846e-5653.81Malate dehydrogenase OS=Nitrosomonas eutropha (str... [more]
MDH_HALHL6.846e-5653.27Malate dehydrogenase OS=Halorhodospira halophila (... [more]
MDH_STRGG8.941e-5652.74Malate dehydrogenase OS=Streptomyces griseus subsp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835909 ID=CF835909; Name=CF835909; organism=Citrus sinensis; type=EST; length=719bp
CTCCATCGAACCTCTCCTTCTCTCGCTTTACTGGAAAAATCTTTTCGTTT
CCCGTGATACATCTCTGATCCGAATTAATGGCCAAGGAACCAGTTCGCGT
TCTTGTCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGA
TTGCTAGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATG
CTTGATATACCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTT
GGTTGATGCTGCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATG
CTGTTGAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTT
CCAAGAAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTC
AATCTACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACT
GCAAGGTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTG
AAAGAATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAG
ATTGGATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCC
AAGTATCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCT
CAGTACCCTGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAA
ACCTGTCCGTGAGCTTGTC
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