CF835922

Overview
NameCF835922
Unique NameCF835922
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7838 contig Csv1_Contig7838:796..1624. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG2_EUPOC (Tubulin gamma-2 chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.658e-12
Identity = 44/203 (21.67%), Postives = 100/203 (49.26%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDY 827
            V+++ T +LR+ G +N D+     +LVP PR HF+++ Y P+   +K     + +V ++     +  ++M     + G YM+   + +GDV P  V+ ++  I+ ++   F+ W P   +  ++ + P +  G  ++ +     M++N T +  +F  +  ++     + A+++ +    + E    EF  + E + +L  +Y
Sbjct:  232 VMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTPLSLDQKFTSVRKTTVLDVMRRLLQTKNIMVTGAVKKGAYMSILNVIQGDVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSKKSPYIDSGHKVSGL-----MLANHTGIRSIFKVLYDQYRTFRKRDAYMNIFKQTKIFEDNLDEFDSSDEVVKSLIDEY 429          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG2_DROME (Tubulin gamma-2 chain OS=Drosophila melanogaster GN=gammaTub37C PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 7.734e-12
Identity = 45/207 (21.74%), Postives = 105/207 (50.72%), Query Frame = -3
Query:  231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS--AEKAYHEQLSVAEITNSAFEPSSMM--AKCDPRHGK-YMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE---AREDLAALEKDY 827
            ++S  T +LR+   +N ++     +L+P P++HF+++ Y P++S    K    + +V ++     +P +MM  A  D +  + +++   + +G+V P  V+ ++  I+ ++   F+ W P   +  +    P V     ++ +     M++N T ++ +F R   ++D +  + AF+  +  E M + + +E   AR+ +  L ++Y
Sbjct:  235 IMSLSTTTLRYPSYMNNNLIGLTASLIPTPQLHFLMTGYTPLMSDCETKTSVRKTTVLDVMRRLLQPKNMMVSALTDKQSRQCFVSILNIIQGEVDPSQVHKSLQRIRERKLANFIPWGPASIQVALPRSSPYVQSAHKVSGL-----MMANHTGISSLFKRALAQYDKLRKRNAFLDNFRRESMFQDDLTELDIARDTVDCLVQEY 436          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB_LYMST (Tubulin beta chain (Fragment) OS=Lymnaea stagnalis PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.010e-11
Identity = 33/90 (36.67%), Postives = 51/90 (56.67%), Query Frame = -3
Query:  231 FVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 500
            FV+W P   K  +   PP          ++ +   I NST++ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:    3 FVEWIPNNVKTAVCDIPPR--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 84          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG_EUPAE (Tubulin gamma chain OS=Euplotes aediculatus PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.319e-11
Identity = 39/175 (22.29%), Postives = 88/175 (50.29%), Query Frame = -3
Query:  309 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH--EQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVH 827
            V+++ T +LR+ G +N D+     +LVP PR HF+++ Y P +S ++ Y    + +  ++     +  ++M     + G YM+   + +GDV P  V+ ++  IK ++   F+ W P   +  +  + P +  G  ++ +     M++N T +  +F  +  ++     + A+++
Sbjct:  232 VMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTP-LSLDQKYTSVRKTTFLDVMRRLLQTKNIMVTGAVKKGAYMSILNVIQGDVDPTQVHKSLQRIKERKLANFIPWGPASIQVALAKKSPYIDSGHKVSGL-----MLANHTGIRSIFKVLYDQYRTFRKRDAYMN 400          
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG2_EUPCR (Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.939e-11
Identity = 38/177 (21.47%), Postives = 86/177 (48.59%), Query Frame = -3
Query:  303 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH--EQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWY 827
            V+++ T +LR+ G +N D+     +LVP PR HF+++ Y P+   ++      + +V ++     +  ++M     + G YM+   + +GDV P  V+ ++  I+ +    F+ W P   +  ++ + P +     ++ +     M++N T +  +F  +  ++     + AF+  Y
Sbjct:  232 VMAASTTTLRYPGYMNNDLVGLIASLVPTPRCHFLMTGYTPLSLNDQKVSSIRKTTVLDVMRRLLQTRNIMTSGAIKKGAYMSILNIIQGDVDPTQVHKSLQRIRERNVANFIPWGPASIQVALSKKSPYIESDNKVSGL-----MLANHTGIRSIFQVLYGQYRQFRKRDAFLGTY 403          
The following BLAST results are available for this feature:
BLAST of CF835922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 415
Match NameE-valueIdentityDescription
TBG2_EUPOC2.658e-1221.67Tubulin gamma-2 chain OS=Euplotes octocarinatus PE... [more]
TBG2_DROME7.734e-1221.74Tubulin gamma-2 chain OS=Drosophila melanogaster G... [more]
TBB_LYMST1.010e-1136.67Tubulin beta chain (Fragment) OS=Lymnaea stagnalis... [more]
TBG_EUPAE1.319e-1122.29Tubulin gamma chain OS=Euplotes aediculatus PE=2 S... [more]
TBG2_EUPCR2.939e-1121.47Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02C03_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835922 ID=CF835922; Name=CF835922; organism=Citrus sinensis; type=EST; length=829bp
TTTTTTTTTTTTTTATAGAACCCAGAAACTTGATAAGCATAACAACTTTC
AACAAGCTTTGAAATTGAGCGAGAATCAAGAATAAGCTTTTCATCACAAA
ATAAAGGCACGAAGCATCACTAAAGCACAAGACATCATATTAAAACGCAC
AGATAATTTCACACTTAAATCCCTTAGTCCTCCTCACCATAATCTTCCTC
ACCCTCGGCAGACTCTGCACCCACCTCCTCATAATCCTTCTCAAGGGCAG
CAAGATCCTCACGAGCCTCAGAGAACTCTCCTTCTTCCATACCCTCGCCA
ACATACCAGTGGACGAAAGCACGCTTTGCATACATAAGATCAAACTTGTG
GTCAATGCGAGAGAACACCTCTGCCACACTGGTGGAGTTGGAGATCATGC
AAACAGCCCTCTGCACCTTGGCAAGGTCACCACCAGGAACAACAGTTGGT
GGCTGGTAGTTGATACCACACTTGAACCCAGTCGGGCACCAGTCGACGAA
TTGGATTGTACGCTTGGTCTTGATGGTAGCAACAGCTGCATTGACATCCT
TGGGCACAACATCACCGCGGTACATAAGGCAGCAAGCCATGTACTTGCCA
TGACGAGGATCACATTTGGCCATCATAGATGAGGGCTCAAAGGCACTGTT
GGTGATCTCAGCAACTGAGAGTTGTTCATGGTAGGCCTTCTCAGCTGAGA
TGACTGGTGCATAGGAGGAAAGCATGAAGTGGATTCTTGGGTATGGGACC
AAGTTGGTTTGGAATTCAGTCACATCCACATTCAAAGCACCATCAAACCT
CAGTGAGGCAGTCAATGAAGAAATTACCT
back to top