CF835922
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG2_EUPOC (Tubulin gamma-2 chain OS=Euplotes octocarinatus PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.658e-12 Identity = 44/203 (21.67%), Postives = 100/203 (49.26%), Query Frame = -3 Query: 231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDY 827 V+++ T +LR+ G +N D+ +LVP PR HF+++ Y P+ +K + +V ++ + ++M + G YM+ + +GDV P V+ ++ I+ ++ F+ W P + ++ + P + G ++ + M++N T + +F + ++ + A+++ + + E EF + E + +L +Y Sbjct: 232 VMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTPLSLDQKFTSVRKTTVLDVMRRLLQTKNIMVTGAVKKGAYMSILNVIQGDVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSKKSPYIDSGHKVSGL-----MLANHTGIRSIFKVLYDQYRTFRKRDAYMNIFKQTKIFEDNLDEFDSSDEVVKSLIDEY 429
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG2_DROME (Tubulin gamma-2 chain OS=Drosophila melanogaster GN=gammaTub37C PE=1 SV=3) HSP 1 Score: 71.2478 bits (173), Expect = 7.734e-12 Identity = 45/207 (21.74%), Postives = 105/207 (50.72%), Query Frame = -3 Query: 231 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS--AEKAYHEQLSVAEITNSAFEPSSMM--AKCDPRHGK-YMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE---AREDLAALEKDY 827 ++S T +LR+ +N ++ +L+P P++HF+++ Y P++S K + +V ++ +P +MM A D + + +++ + +G+V P V+ ++ I+ ++ F+ W P + + P V ++ + M++N T ++ +F R ++D + + AF+ + E M + + +E AR+ + L ++Y Sbjct: 235 IMSLSTTTLRYPSYMNNNLIGLTASLIPTPQLHFLMTGYTPLMSDCETKTSVRKTTVLDVMRRLLQPKNMMVSALTDKQSRQCFVSILNIIQGEVDPSQVHKSLQRIRERKLANFIPWGPASIQVALPRSSPYVQSAHKVSGL-----MMANHTGISSLFKRALAQYDKLRKRNAFLDNFRRESMFQDDLTELDIARDTVDCLVQEY 436
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBB_LYMST (Tubulin beta chain (Fragment) OS=Lymnaea stagnalis PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.010e-11 Identity = 33/90 (36.67%), Postives = 51/90 (56.67%), Query Frame = -3 Query: 231 FVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 500 FV+W P K + PP ++ + I NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 3 FVEWIPNNVKTAVCDIPPR--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 84
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG_EUPAE (Tubulin gamma chain OS=Euplotes aediculatus PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.319e-11 Identity = 39/175 (22.29%), Postives = 88/175 (50.29%), Query Frame = -3 Query: 309 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH--EQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVH 827 V+++ T +LR+ G +N D+ +LVP PR HF+++ Y P +S ++ Y + + ++ + ++M + G YM+ + +GDV P V+ ++ IK ++ F+ W P + + + P + G ++ + M++N T + +F + ++ + A+++ Sbjct: 232 VMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTP-LSLDQKYTSVRKTTFLDVMRRLLQTKNIMVTGAVKKGAYMSILNVIQGDVDPTQVHKSLQRIKERKLANFIPWGPASIQVALAKKSPYIDSGHKVSGL-----MLANHTGIRSIFKVLYDQYRTFRKRDAYMN 400
BLAST of CF835922 vs. ExPASy Swiss-Prot
Match: TBG2_EUPCR (Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.939e-11 Identity = 38/177 (21.47%), Postives = 86/177 (48.59%), Query Frame = -3 Query: 303 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH--EQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWY 827 V+++ T +LR+ G +N D+ +LVP PR HF+++ Y P+ ++ + +V ++ + ++M + G YM+ + +GDV P V+ ++ I+ + F+ W P + ++ + P + ++ + M++N T + +F + ++ + AF+ Y Sbjct: 232 VMAASTTTLRYPGYMNNDLVGLIASLVPTPRCHFLMTGYTPLSLNDQKVSSIRKTTVLDVMRRLLQTRNIMTSGAIKKGAYMSILNIIQGDVDPTQVHKSLQRIRERNVANFIPWGPASIQVALSKKSPYIESDNKVSGL-----MLANHTGIRSIFQVLYGQYRQFRKRDAFLGTY 403 The following BLAST results are available for this feature:
BLAST of CF835922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 415
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF835922 ID=CF835922; Name=CF835922; organism=Citrus sinensis; type=EST; length=829bpback to top |