CF835923

Overview
NameCF835923
Unique NameCF835923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7838 contig Csv1_Contig7838:395..1153. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835923 vs. ExPASy Swiss-Prot
Match: TBA_POPEU (Tubulin alpha chain (Fragments) OS=Populus euphratica PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 35/50 (70.00%), Postives = 36/50 (72.00%), Query Frame = 2
Query:  347 RSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPR 496
            RSLDIERPTYTNLNR              FDGA+NVDVTEFQTNLVPYPR
Sbjct:   15 RSLDIERPTYTNLNR--------------FDGAINVDVTEFQTNLVPYPR 50          
The following BLAST results are available for this feature:
BLAST of CF835923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 421
Match NameE-valueIdentityDescription
TBA_POPEU9.673e-1170.00Tubulin alpha chain (Fragments) OS=Populus euphrat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835923 ID=CF835923; Name=CF835923; organism=Citrus sinensis; type=EST; length=759bp
TGCCAACAACTTCTCTCGTGGCCACTATACCATTGGTAAGGAGATTGTTG
ATCTCTGCCTTGACCGCATCAGGAAGCTGGCTGATAACTGCACTGGTCTC
CAGGGATTCCTTGTTTTCAATGCTGTTGGTGGAGGAACTGGCTCTGGTCT
TGGGTCTCTTCTTCTGGAGAGGTTGTCTGTTGACTATGGAAAGAAGTCAA
AGTTGGGCTTCACTGTCTACCCATCTCCTCAGGTCTCCACATCTGTTGTT
GAGCCTTACAACAGTGTCCTCTCAACCCACTCCCTGTTGGAGCATACTGA
TGTGGCTGTTCTTCTCGACAATGAGGCCATTTATGACATCTGCAGGCGCT
CCCTTGACATTGAACGTCCTACCTATACTAACCTCAATAGACTTGTTTCT
CAGGTAATTTCTTCATTGACTGCCTCACTGAGGTTTGATGGTGCTTTGAA
TGTGGATGTGACTGAATTCCAAACCAACTTGGTCCCATACCCAAGAATCC
ACTTCATGCTTTCCTCCTATGCACCAGTCATCTCAGCTGAGAAGGCCTAC
CATGAACAACTCTCAGTTGCTGAGATCACCAACAGTGCCTTTGAGCCCTC
ATCTATGATGGCCAAATGTGATCCTCGTCATGGCAAGTACATGGCTTGCT
GCCTTATGTACCGCGGTGATGTTGTGCCCAAGGATGTCAATGCAGCTGTT
GCTACCATCAAGACCAAGCGTACAATCCAATTCGTCGACTGGTGCCCGAC
TGGGTTCAA
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