CF835930

Overview
NameCF835930
Unique NameCF835930
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10620 contig Csv1_Contig10620:20..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835930 vs. ExPASy Swiss-Prot
Match: Y1385_MYCBO (Uncharacterized oxidoreductase Mb1385 OS=Mycobacterium bovis GN=fabG2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.913e-13
Identity = 59/184 (32.07%), Postives = 92/184 (50.00%), Query Frame = 3
Query:  198 QLFHKNGAKVVIADVQDNLGQALADKLGNQDVCY-IHCDVSNEREVINLVDTTVAKFGKLDILVNTGCNLEYRGFVSILDTPKSDLEHLLAVNTIGGFLVAKHAARVMVPRRRGCILYTTGTGTTACAEIEGFCNIPANYYGVSKFGILGLVKGLAAELGRYGIRVDCVSHTYGL---AMTEAI 737
            Q F   GA+VV+ DV     +  A +LG  DV   + CDV+   +V  L+ T V +FG LD++VN   N       ++    +   + ++AV+  G +   + AA +M  R+RG I+    +  +    + G  N     Y  +K GI+G+ K  A EL   GIRV+ ++   GL   AMTEA+
Sbjct:   25 QRFVAEGARVVLGDVNLEATEVAAKRLGGDDVALAVRCDVTQADDVDILIRTAVERFGGLDVMVN---NAGITRDATMRTMTEEQFDQVIAVHLKGTWNGTRLAAAIMRERKRGAIV--NMSSVSGKVGMVGQTN-----YSAAKAGIVGMTKAAAKELAHLGIRVNAIAP--GLIRSAMTEAM 196          
BLAST of CF835930 vs. ExPASy Swiss-Prot
Match: Y1350_MYCTU (Uncharacterized oxidoreductase Rv1350/MT1393 OS=Mycobacterium tuberculosis GN=fabG2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.913e-13
Identity = 59/184 (32.07%), Postives = 92/184 (50.00%), Query Frame = 3
Query:  198 QLFHKNGAKVVIADVQDNLGQALADKLGNQDVCY-IHCDVSNEREVINLVDTTVAKFGKLDILVNTGCNLEYRGFVSILDTPKSDLEHLLAVNTIGGFLVAKHAARVMVPRRRGCILYTTGTGTTACAEIEGFCNIPANYYGVSKFGILGLVKGLAAELGRYGIRVDCVSHTYGL---AMTEAI 737
            Q F   GA+VV+ DV     +  A +LG  DV   + CDV+   +V  L+ T V +FG LD++VN   N       ++    +   + ++AV+  G +   + AA +M  R+RG I+    +  +    + G  N     Y  +K GI+G+ K  A EL   GIRV+ ++   GL   AMTEA+
Sbjct:   25 QRFVAEGARVVLGDVNLEATEVAAKRLGGDDVALAVRCDVTQADDVDILIRTAVERFGGLDVMVN---NAGITRDATMRTMTEEQFDQVIAVHLKGTWNGTRLAAAIMRERKRGAIV--NMSSVSGKVGMVGQTN-----YSAAKAGIVGMTKAAAKELAHLGIRVNAIAP--GLIRSAMTEAM 196          
BLAST of CF835930 vs. ExPASy Swiss-Prot
Match: HCD2_DROME (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Drosophila melanogaster GN=scu PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 53/188 (28.19%), Postives = 96/188 (51.06%), Query Frame = 3
Query:  210 KNGAKVVIADVQDNLGQALADKLGNQDVCYIHCDVSNEREVINLVDTTVAKFGKLDILVN---TGCNLEYRGFVSILDTPKSDLEHLLAVNTIGGFLVAKHAARVMVPR------RRGCILYTTGTGTTACAEIEGFCNIPANYYGVSKFGILGLVKGLAAELGRYGIRVDCVSHTYGLAMTEAIASI 746
            K GA V++AD+  + G  +A +LG++ V ++  DV++E++V   + T   KFG+LD+ VN   T   ++   F   +     D + ++ +NT+G F V + +A +M         +RG I+      T + A  +G   I    Y  SK  ++G+   +A +L   GIR+  ++   GL  T  +A++
Sbjct:   26 KQGASVILADLPSSKGNEVAKELGDK-VVFVPVDVTSEKDVSAALQTAKDKFGRLDLTVNCAGTATAVKTFNFNKNVAHRLEDFQRVININTVGTFNVIRLSAGLMGANEPNQDGQRGVIV-----NTASVAAFDG--QIGQAAYSASKAAVVGMTLPIARDLSTQGIRICTIAP--GLFNTPMLAAL 203          
The following BLAST results are available for this feature:
BLAST of CF835930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
Y1385_MYCBO7.913e-1332.07Uncharacterized oxidoreductase Mb1385 OS=Mycobacte... [more]
Y1350_MYCTU7.913e-1332.07Uncharacterized oxidoreductase Rv1350/MT1393 OS=My... [more]
HCD2_DROME7.406e-1128.193-hydroxyacyl-CoA dehydrogenase type-2 OS=Drosophi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835930 ID=CF835930; Name=CF835930; organism=Citrus sinensis; type=EST; length=759bp
GAGGGATAATAATCACAAGCCAAACCTTGTATTTTAACAATCTTGATTGA
GTTTCAGGTTTTTGAGGAAATTTTTTCACACAGGCTTGTAGTACTACTGC
AGCAGCACCCTGCGAAAGGTGTCAACTCAGCATTCGGTTACAAGGCAGAG
TGGCAATCATTACTGGCGGAGCAAGCGGGATCGGAGCATCTGCGGCTCAG
CTTTTCCACAAAAATGGAGCCAAAGTTGTCATAGCCGATGTGCAAGATAA
TCTTGGCCAAGCCCTAGCCGATAAGCTAGGCAACCAGGATGTCTGCTACA
TCCATTGTGATGTATCAAATGAAAGGGAAGTCATCAATCTTGTTGATACC
ACCGTTGCTAAATTCGGAAAGCTCGACATCCTGGTCAATACCGGATGCAA
TCTTGAGTATCGTGGTTTCGTGAGCATTTTGGACACCCCAAAGTCTGATC
TAGAACATTTACTGGCTGTGAACACAATTGGTGGTTTCTTAGTAGCCAAG
CATGCTGCAAGAGTCATGGTGCCACGCCGCAGAGGTTGCATATTGTATAC
AACGGGTACGGGCACTACTGCTTGTGCGGAAATTGAAGGTTTCTGCAATA
TTCCAGCTAATTATTATGGAGTGTCAAAATTTGGTATCTTGGGACTTGTC
AAGGGCTTAGCGGCAGAGCTTGGACGGTATGGAATAAGAGTAGATTGCGT
ATCGCATACTTATGGCTTGGCAATGACTGAAGCGATAGCATCAATAGCAA
ACGCTGCGC
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