CF972318

Overview
NameCF972318
Unique NameCF972318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
sweet orange flesh cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3822 contig Csv1_Contig3822:137..859. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: ACCO1_ARATH (1-aminocyclopropane-1-carboxylate oxidase OS=Arabidopsis thaliana GN=ACO PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.208e-21
Identity = 62/236 (26.27%), Postives = 114/236 (48.31%), Query Frame = 2
Query:   17 PTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSNGE 721
            P I+L++++ E   ER    E++K A  +WG    VNHGIS +L ++V++  +  + + +EE+ K +       I+  G     +    ++WE  F+    P    ++S  P    DY     ++A ++  L+ ++L +                          K++ YP CP P+L  G+ AHTD   +  +   + V GLQL    +WV    V +SI++++GD +E+++NG+
Sbjct:    5 PIINLEKLNGE---ERAITMEKIKDACENWGFFECVNHGISLELLDKVEKMTKEHYKKCMEERFKES-------IKNRGLDSLRSEVNDVDWESTFYLKHLPVS--NISDVPDLDDDYRTLMKDFAGKIEKLSEELLDLLCENLGLEKGYLKKVFYGSKRPTFGTKVSNYPPCPNPDLVKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWVDVPPVKHSIVVNLGDQLEVITNGK 228          
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: ACCO_PRUMU (1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.414e-21
Identity = 64/236 (27.12%), Postives = 111/236 (47.03%), Query Frame = 2
Query:   17 PTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSNGE 721
            P I+L+ ++ E R   +   E++K A  +WG   LV+HGI  +  + V+R  +  + Q +E++ K   E  + K    G +        ++WE  F+    P  K ++S  P     Y     E+A +L  LA ++L +                          K++ YP CP PEL  G+ AHTD   L  +   + V GLQL    +W+    + +SI++++GD +E+++NG+
Sbjct:    5 PIINLEGLNGEGR---KATMEKIKDACENWGFFELVSHGIPTEFLDTVERLTKEHYRQCLEQRFK---ELVASK----GLEAVKTEVNDMDWESTFYLRHLP--KSNISEVPDLEDQYRNVMKEFALKLEKLAEQLLDLLCENLGLEKGYLKKAFYGTNGPTFGTKVSNYPPCPNPELIKGLRAHTDAGGLILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVINLGDQLEVITNGK 228          
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: ACCO3_PETHY (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Petunia hybrida GN=ACO3 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.414e-21
Identity = 62/236 (26.27%), Postives = 115/236 (48.73%), Query Frame = 2
Query:   17 PTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSNGE 721
            P I+L++++     ER+   E +K A  +WG   LVNHGI  ++ + V++  +  + + +E++ K   E  + K    G +        L+WE  FF    P    ++S  P    +Y E   ++A++L  LA ++L +                          K++ YP CP+P+L  G+ AHTD   +  +   + V GLQL    +W+    + +SI++++GD +E+++NG+
Sbjct:    5 PIINLEKLNGS---ERDATMEMIKDACENWGFFELVNHGIPHEVMDTVEKLTKGHYKKCMEQRFK---ELVASK----GLEAVQAEVTDLDWESTFFLRHLPVS--NISEVPDLDDEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGK 228          
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.229e-20
Identity = 62/234 (26.50%), Postives = 109/234 (46.58%), Query Frame = 2
Query:   14 VPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSN 715
            +PTIDLK     D + R    E++  AA  WG   ++NHGI  D+ E++    + F +Q  E K+ + +   + K+  Y S     +S    W D       P+  R   +    P+   E   EY++++  L   +  +                         +  +YYP CPQP+L LG+  H+D S LT +L + + GLQ+ +   WV    VP ++++++GD +++++N
Sbjct:   62 IPTIDLKG-GGTDSITRRSLVEKIGDAAEKWGFFQVINHGIPMDVLEKMIDGIREFHEQDTEVKKGFYSRDPASKMV-YSSNFDLFSSPAANWRDTLGCYTAPDPPRPEDL----PATCGEMMIEYSKEVMKLGKLLFELLSEALGLNTNHLKDMDCTNSLL---LLGHYYPPCPQPDLTLGLTKHSDNSFLTILLQDHIGGLQVLHDQYWVDVPPVPGALVVNVGDLLQLITN 286          
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: ACCO3_CUCME (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Cucumis melo GN=ACO3 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.739e-20
Identity = 63/236 (26.69%), Postives = 109/236 (46.19%), Query Frame = 2
Query:   17 PTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSNGE 721
            P I++  ++ E RV       ++  A  +WG   LVNHGIS +L ++V++  +  + + +E++ K   E  + K    G           +WE  FF    P    +MS       +Y +   E+A +L  LA ++L +                          K++ YP CP+PEL  G+ AHTD   L  +   + V GL +    KWV    + +SI++++GD +E+++NG+
Sbjct:    6 PVINMNNLNGESRVS---VLNQINDACENWGFFELVNHGISHELMDKVEKLTKEHYRKCMEQRFK---EMVASK----GLDSVETEINDTDWESTFFLRHLPVS--NMSEIGDLDEEYKKVMKEFADELEKLAEEVLDLLCENLGLEKGYLKKVFYGSKGPNFGTKVSNYPPCPKPELIKGLRAHTDAGGLILLFQDDKVSGLHVLKDGKWVDVPPMHHSIVINLGDQLEVITNGK 229          
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: GAOX1_ARATH (Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.041e-19
Identity = 66/241 (27.39%), Postives = 109/241 (45.23%), Query Frame = 2
Query:   14 VPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPS-------DYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSN 715
            VP IDL+ + S+     +  R  + +A    G   +VNHGIS++L          FFD P+ EK++   +  SG+  GY S      S +L W++        +  R  S+              + +   EY   + SL+ KI+ +                         M++NYYP C +P+L LG   H D ++LT +  + V GLQ+F +++W + +  P + +++IGDT   LSN
Sbjct:   61 VPLIDLQNLLSDPSSTLDASRL-ISEACKKHGFFLVVNHGISEELISDAHEYTSRFFDMPLSEKQRVLRK--SGESVGYASSFTGRFSTKLPWKETLSFRFCDDMSRSKSVQDYFCDALGHGFQPFGKVYQEYCEAMSSLSLKIMELLGLSLGVKRDYFREFFEENDSI---MRLNYYPPCIKPDLTLGTGPHCDPTSLTILHQDHVNGLQVFVENQWRSIRPNPKAFVVNIGDTFMALSN 295          
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: ACCO_DIOKA (1-aminocyclopropane-1-carboxylate oxidase OS=Diospyros kaki GN=DK-ACO1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.041e-19
Identity = 60/236 (25.42%), Postives = 115/236 (48.73%), Query Frame = 2
Query:   17 PTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILHN-MVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSNGE 721
            P I++++++ E   ER      +  A  +WG   LVNHGI  +L + V+R  +A + + +E++ K     AS  ++G  +++ +     ++WE  +F    P+   ++S  P    +Y     ++A +L  LA  +L +                          K+  YP CP+ +L  G+ AHTD   +  +  +  V GLQL   D+W+    + +SI++++GD +E+++NG+
Sbjct:    5 PVINMEKMNGE---ERAATMGLINDACENWGFFELVNHGIPPELMDTVERVTKAHYKKCMEQRFKEL--VASKALEGIQAEVTD-----MDWESTYFLRHLPQS--NISEVPDLDEEYRRVMKDFAERLEKLAEYLLDLLCENLGLEKGYLKKAFYGTKGPNFGTKVANYPPCPKADLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDDQWIDVPPMKHSIVINLGDQLEVITNGK 228          
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: ACCO_PERAE (1-aminocyclopropane-1-carboxylate oxidase OS=Persea americana GN=ACO PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.319e-19
Identity = 62/238 (26.05%), Postives = 115/238 (48.32%), Query Frame = 2
Query:   17 PTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQM--KINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSNGE 721
            P I++++++ ++R    K    +  A  +WG   LVNH I  +L + V+R  +  + + +E++ K   E  + K++G     A   +  ++WE  FF    P    ++S  P    ++ +   E+A +L  LA ++L +                            K++ YP CP+PEL  G+ AHTD   L  +   + V GLQL    +WV    + +SI++++GD +E+++NG+
Sbjct:    5 PVINMEKLEGQERAATMKL---INDACENWGFFELVNHSIPVELMDEVERLTKEHYKKCMEQRFK---ELMASKVEG-----AVVDANDMDWESTFFIRHLPVS--NLSEIPDLTDEHRKVMKEFAEKLEKLAEQVLDLLCENLGLEKGYLKMAFAGTTTGLPTFGTKVSNYPPCPRPELFKGLRAHTDAGGLILLFQDDRVAGLQLLKDGEWVDVPPMNHSIVINLGDQVEVITNGK 229          
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: GAOX2_ARATH (Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.028e-19
Identity = 72/253 (28.46%), Postives = 109/253 (43.08%), Query Frame = 2
Query:   14 VPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEW------------------EDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSNG 718
            VP IDL   DS     R      + +A    G   +VNHG+S+ L     R  ++FFD P+  K+K   ++  G+  GY S      S +L W                  +DYF   +  E ++    + K   DY EA S  + ++  L    L V                         M++N+YP C  P+L LG   H D S+LT +  + V GLQ+F  ++W + +  P + +++IGDT   LSNG
Sbjct:   63 VPFIDLSSQDSTLEAPRV-----IAEACTKHGFFLVVNHGVSESLIADAHRLMESFFDMPLAGKQKA--QRKPGESCGYASSFTGRFSTKLPWKETLSFQFSNDNSGSRTVQDYFSDTLGQEFEQ----FGKVYQDYCEAMSSLSLKIMELLGLSLGVNRDYFRGFFEENDSI----------MRLNHYPPCQTPDLTLGTGPHCDPSSLTILHQDHVNGLQVFVDNQWQSIRPNPKAFVVNIGDTFMALSNG 294          
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: ACCO_TOBAC (1-aminocyclopropane-1-carboxylate oxidase OS=Nicotiana tabacum GN=ACO PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.028e-19
Identity = 60/236 (25.42%), Postives = 112/236 (47.46%), Query Frame = 2
Query:   17 PTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSNGE 721
            P I+L++++  +R +     E +K A  +WG   LVNHGI  ++ + V++  +  + + +E++ K   E  + K    G +        L+WE  FF    P    ++   P     Y E   ++A++L  LA ++L +                          K++ YP CP+P+L  G+ AHTD   +  +   + V GLQL    +W+    +  SI++++GD +E+++NG+
Sbjct:    5 PIINLEKLNGSERADT---MEMIKDACENWGFFELVNHGIPHEVMDTVEKMTKGHYKKCMEQRFK---ELVASK----GLEAVQAEVTDLDWESTFFLRHLPVS--NICEVPDLDDQYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKKIFYGTKGPNFGSKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVTGLQLLKDGQWIDVPPMRLSIVVNLGDQLEVITNGK 228          
The following BLAST results are available for this feature:
BLAST of CF972318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
ACCO1_ARATH7.208e-2126.271-aminocyclopropane-1-carboxylate oxidase OS=Arabi... [more]
ACCO_PRUMU9.414e-2127.121-aminocyclopropane-1-carboxylate oxidase OS=Prunu... [more]
ACCO3_PETHY9.414e-2126.271-aminocyclopropane-1-carboxylate oxidase 3 OS=Pet... [more]
ACCH1_ARATH1.229e-2026.501-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCO3_CUCME2.739e-2026.691-aminocyclopropane-1-carboxylate oxidase 3 OS=Cuc... [more]
GAOX1_ARATH1.041e-1927.39Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana G... [more]
ACCO_DIOKA1.041e-1925.421-aminocyclopropane-1-carboxylate oxidase OS=Diosp... [more]
ACCO_PERAE2.319e-1926.051-aminocyclopropane-1-carboxylate oxidase OS=Perse... [more]
GAOX2_ARATH3.028e-1928.46Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana G... [more]
ACCO_TOBAC3.028e-1925.421-aminocyclopropane-1-carboxylate oxidase OS=Nicot... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionANS-partial sweet orange flesh cDNA Citrus sinensis cDNA similar to partial anthocyanidin synthase, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF972318 ID=CF972318; Name=CF972318; organism=Citrus sinensis; type=EST; length=723bp
TGAAGGGCCTCAAGTTCCCACAATTGATCTCAAGGAAATTGACTCTGAGG
ACAGAGTTGAACGCGAGAAATGTCGCGAGGAGCTCAAGAAAGCTGCCATG
GATTGGGGTGTTATGCACCTTGTTAACCATGGGATTTCGGATGATCTCAC
TGAACGCGTCAAGAGAGCCGGTCAGGCCTTTTTCGATCAGCCGGTTGAGG
AGAAAGAGAAGTATGCCAATGAGCAGGCTTCGGGAAAGATTCAGGGTTAC
GGAAGCAAGCTAGCTAATAATGCTAGTGGCCAGCTTGAGTGGGAGGACTA
TTTCTTCCACCTTATTTATCCTGAAGATAAAAGGGATATGTCCATTTGGC
CTAAGACTCCAAGCGACTATACAGAGGCTACCAGTGAATACGCAAGGCAA
CTGAGAAGCCTAGCGACGAAAATTCTGGCAGTGTTGTCACTTGGCTTGGG
ACTGGAAGAGGGGAGGCTGGAAAAGGAAGTTGGTGGCCTAGAAGAGCTCC
TTCTTCAGATGAAGATCAATTACTATCCCAAATGCCCTCAACCAGAACTG
GCTCTTGGTGTTGAAGCTCACACAGATGTGAGTGCACTCACTTTCATTCT
TCACAACATGGTTCCGGGCCTGCAGCTCTTCTACAAAGACAAATGGGTGA
CTGCTAAATGTGTTCCAAATTCGATCATCTTGCACATTGGTGACACCATT
GAAATTCTGAGCAATGGCGAGTA
back to top