CF972318

Overview
NameCF972318
Unique NameCF972318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
sweet orange flesh cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3822 contig Csv1_Contig3822:137..859. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: ACCO2_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Solanum lycopersicum GN=ACO2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.166e-19
Identity = 58/236 (24.58%), Postives = 115/236 (48.73%), Query Frame = 2
Query:   17 PTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSNGE 721
            P I+L++++  +RV      E++  A  +WG   LVNHGI  ++ + V++  +  + + +E++ K     A   ++G   ++ +     ++WE  FF    P    ++S  P     Y E   ++ ++L  LA ++L +                          K++ YP CP+P+L  G+ AHTD   +  +   + V GLQL    +W+    + +SI++++GD +E+++NG+
Sbjct:    5 PIINLEKLNGAERVAT---MEKINDACENWGFFELVNHGIPHEVMDTVEKLTKGHYKKCMEQRFKEL--VAKKGLEGVEVEVTD-----MDWESTFFLRHLPSS--NISQLPDLDDVYREVMRDFRKRLEKLAEELLDLLCENLGLEKSYLKNTFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGRWIDVPPMRHSIVVNLGDQLEVITNGK 228          
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSI (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. indica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.811e-19
Identity = 63/236 (26.69%), Postives = 112/236 (47.46%), Query Frame = 2
Query:   17 PTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATKIL-AVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSNG 718
            P I+++ +  E   ER    E+L  A  +WG   ++NHGIS +L + V++  +  + +  E++      + + K    G    N A  +L+WE  FF    PE   +++  P    DY      +A +L +LA ++L  +                          K++ YP CP+P+L  G+ AHTD   +  +   + V GLQL    +WV    + +SI++++GD +E+++NG
Sbjct:    8 PVINMELLAGE---ERPAAMEQLDDACENWGFFEILNHGISTELMDEVEKMTKDHYKRVREQRFL----EFASKTLKEGCDDVNKAE-KLDWESTFFVRHLPES--NIADIPDLDDDYRRLMKRFAAELETLAERLLDLLCENLGLEKGYLTKAFRGPAGAPTFGTKVSSYPPCPRPDLVKGLRAHTDAGGIILLFQDDSVGGLQLLKDGEWVDVPPMRHSIVVNLGDQLEVITNG 233          
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSJ (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. japonica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.151e-18
Identity = 63/236 (26.69%), Postives = 112/236 (47.46%), Query Frame = 2
Query:   17 PTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATKIL-AVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSNG 718
            P I+++ +  E   ER    E+L  A  +WG   ++NHGIS +L + V++  +  + +  E++      + + K    G    N A  +L+WE  FF    PE   +++  P    DY      +A +L +LA ++L  +                          K++ YP CP+P+L  G+ AHTD   +  +   + V GLQL    +WV    + +SI++++GD +E+++NG
Sbjct:    8 PVINMELLAGE---ERPAAMEQLDDACENWGFFEILNHGISTELMDEVEKMTKDHYKRVREQRFL----EFASKTLKEGCDDVNKAE-KLDWESTFFVRHLPES--NIADIPDLDDDYRRLMKRFAAELETLAERLLDLLCENLGLEKGYLTKAFRGPAGAPTFGTKVSSYPPCPRPDLVEGLRAHTDAGGIILLFQDDRVGGLQLLKDGEWVDVPPMRHSIVVNLGDQLEVITNG 233          
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.564e-18
Identity = 56/235 (23.83%), Postives = 107/235 (45.53%), Query Frame = 2
Query:   17 PTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSNG 718
            P +DL ++  E   ER++    +  A  +WG   +VNHG+  DL +  ++  +  +   +E+K    N+    K    G +        ++WE  F+    P+   ++   P    +Y  A  ++ ++L +LA  +L +                          K++ YP CP+PE+  G+ AHTD   +  +   + V GLQL     W+    + +SI++++GD +E+++NG
Sbjct:    8 PVVDLSKLIGE---ERDQTMALINDACENWGFFEIVNHGLPHDLMDNAEKMTKEHYKISMEQK---FNDMLKSK----GLENLEREVEDVDWESTFYLRHLPQS--NLYDIPDMSDEYRTAMKDFGKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPACPKPEMIKGLRAHTDAGGIILLFQDDKVTGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITNG 230          
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: IDS3_HORVU (2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.348e-18
Identity = 54/220 (24.55%), Postives = 97/220 (44.09%), Query Frame = 2
Query:   62 REKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYF-FHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSNG 718
            R++ R  + +A  + G   +VNHG+S  +   ++   + FF  P  +K    +E+   K     S    +  G+  W D       +P D   ++ WP TP    +   ++  Q R +  ++L +                         + IN+YP CP P+ ALG   H D + +T +L   V GL++ YK  W+     PN+ +++ G  +E+++NG
Sbjct:   44 RDEVRRSILEAGKELGFFQVVNHGVSKQVMRDMEGMCEQFFHLPAADKASLYSEERH-KPNRLFSGATYDTGGEKYWRDCLRLACPFPVDD-SINEWPDTPKGLRDVIEKFTSQTRDVGKELLRLLCEGMGIQADYFEGDLSGGNVI---LNINHYPSCPNPDKALGQPPHCDRNLITLLLPGAVNGLEVSYKGDWIKVDPAPNAFVVNFGQQLEVVTNG 258          
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.348e-18
Identity = 55/235 (23.40%), Postives = 104/235 (44.26%), Query Frame = 2
Query:   11 QVPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSN 715
            ++P I+L  + S   + RE   E++ +A+  +G   +VNHGI  D+ +++    + F +Q  + K +Y +     K   Y S           W D     I   ++ D   +P    D     S Y R L  +  ++L+                             +YYP CPQPEL  G   H+D   LT ++ + + GLQ+  +++W+    +P +++++I D +++++N
Sbjct:   90 KIPVINLNGLSSNSEIRREIV-EKIGEASEKYGFFQIVNHGIPQDVMDKMVDGVRKFHEQDDQIKRQYYSRDRFNKNFLYSSNYVLIPGIACNWRDTM-ECIMNSNQPDPQEFPDVCRDILMKYSNYVRNLGLILFELLSEALGLKPNHLEEMDCAEGLILLG------HYYPACPQPELTFGTSKHSDSGFLTILMQDQIGGLQILLENQWIDVPFIPGALVINIADLLQLITN 316          
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: ACCO1_DORSP (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Doritaenopsis sp. GN=ACO1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.348e-18
Identity = 66/243 (27.16%), Postives = 111/243 (45.68%), Query Frame = 2
Query:    2 EGPQVPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQM--KINYYPKCPQPELALGVEAHTDVSALTFILHN-MVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSNGE 721
            E    P I+++ +      +R      L+ A  +WG+  L+NHGIS +L  RV+   +  + +  E++ K   E AS  +      + N     L+WE  FF    P    ++S  P    D      E+A +L +LA ++L +                            K++ YP CP+PEL  G+ AHTD   +  +  +  V GLQL    +W+    V +SI+++IGD +E+++NG+
Sbjct:    2 ESGSFPVINMELLQGS---QRPAAMALLRDACENWGLYELLNHGISHELMNRVETVNKEHYRRFREQRFK---EFASKTLD----TVENVEPENLDWESTFFLRHLPTS--NISQIPDLDDDCRSTMKEFALELENLAERLLDLLCEDLGLEKGYLKKVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWIDVPPVRHSIVVNIGDQLEVITNGK 232          
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: ACCO2_DORSP (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Doritaenopsis sp. GN=ACO2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.272e-17
Identity = 65/243 (26.75%), Postives = 109/243 (44.86%), Query Frame = 2
Query:    2 EGPQVPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQM--KINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSNGE 721
            E    P I+++ +      +R      L+ A  +WG   L+NHGIS +L  RV+   +  + +  E++ K   E AS  +      + N     L+WE  FF    P    ++S  P    D      E+AR+L  LA ++L +                            K++ YP CP+P+L  G+ AHTD   +  +   + V GLQL    +W+    +  SI+++IGD +E+++NG+
Sbjct:    2 ESGSFPVINMELLQGS---QRPAAMALLRDACENWGFFELLNHGISHELMNRVEAVNKEHYRRFREQRFK---EFASKTLDS----VENVDPDNLDWESTFFLRHLPTS--NISQIPDLDDDCRATMKEFARELEKLAERLLDLLCEDLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDREWIEVPPLRYSIVVNIGDQLEVITNGK 232          
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: G3OX3_ARATH (Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.407e-16
Identity = 51/222 (22.97%), Postives = 98/222 (44.14%), Query Frame = 2
Query:   83 LKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQ-----MKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYK----DKWVTAKCVPNSIILHIGDTIEILSNGE 721
            L++A  +WGV H+ +HG+S  L   V    +  F  P+  K      ++  +  GYG    +    +L W + F  +     +    +WP   +++     EY + +  L+ +++++                              +++N YP CP P LA+G+  HTD S LT +    +PGL++        +W+  + +  S+++ +GD   I+SNG+
Sbjct:   61 LRQACEEWGVFHITDHGVSHSLLHNVDCQMKRLFSLPMHRK--ILAVRSPDESTGYGVVRISMFYDKLMWSEGFSVMGSSLRRHATLLWPDDHAEFCNVMEEYQKAMDDLSHRLISMLMGSLGLTHEDLGWLVPDKTGSGTDSIQSFLQLNSYPVCPDPHLAMGLAPHTDSSLLTILYQGNIPGLEIESPQEEGSRWIGVEPIEGSLVVIMGDLSHIISNGQ 280          
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.093e-16
Identity = 64/244 (26.23%), Postives = 99/244 (40.57%), Query Frame = 2
Query:   14 VPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEAT---------SEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSNG 718
            VP ID+  + S D     +    + +A    G   +VNHGI  +L     R   AFF  P+ EK++       G+  GY S      + +L W++       P D       P    DY  AT           YAR    ++   L +                         M++NYYP C +P   LG   H D ++LT +  + V GLQ+  + +W + +   ++ +++IGDT   LSNG
Sbjct:   39 VPLIDIGGMLSGDPRATAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDAFFTMPLPEKQRALRRP--GESCGYASSFTGRFASKLPWKETLSFRSCPSD-------PALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPMETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNG 273          
The following BLAST results are available for this feature:
BLAST of CF972318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
ACCO2_SOLLC5.166e-1924.581-aminocyclopropane-1-carboxylate oxidase 2 OS=Sol... [more]
ACCO1_ORYSI8.811e-1926.691-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO1_ORYSJ1.151e-1826.691-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO1_BRAJU2.564e-1823.831-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]
IDS3_HORVU3.348e-1824.552'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vu... [more]
DV4H_CATRO3.348e-1823.40Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
ACCO1_DORSP3.348e-1827.161-aminocyclopropane-1-carboxylate oxidase 1 OS=Dor... [more]
ACCO2_DORSP1.272e-1726.751-aminocyclopropane-1-carboxylate oxidase 2 OS=Dor... [more]
G3OX3_ARATH1.407e-1622.97Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis th... [more]
GAO1B_WHEAT4.093e-1626.23Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionANS-partial sweet orange flesh cDNA Citrus sinensis cDNA similar to partial anthocyanidin synthase, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF972318 ID=CF972318; Name=CF972318; organism=Citrus sinensis; type=EST; length=723bp
TGAAGGGCCTCAAGTTCCCACAATTGATCTCAAGGAAATTGACTCTGAGG
ACAGAGTTGAACGCGAGAAATGTCGCGAGGAGCTCAAGAAAGCTGCCATG
GATTGGGGTGTTATGCACCTTGTTAACCATGGGATTTCGGATGATCTCAC
TGAACGCGTCAAGAGAGCCGGTCAGGCCTTTTTCGATCAGCCGGTTGAGG
AGAAAGAGAAGTATGCCAATGAGCAGGCTTCGGGAAAGATTCAGGGTTAC
GGAAGCAAGCTAGCTAATAATGCTAGTGGCCAGCTTGAGTGGGAGGACTA
TTTCTTCCACCTTATTTATCCTGAAGATAAAAGGGATATGTCCATTTGGC
CTAAGACTCCAAGCGACTATACAGAGGCTACCAGTGAATACGCAAGGCAA
CTGAGAAGCCTAGCGACGAAAATTCTGGCAGTGTTGTCACTTGGCTTGGG
ACTGGAAGAGGGGAGGCTGGAAAAGGAAGTTGGTGGCCTAGAAGAGCTCC
TTCTTCAGATGAAGATCAATTACTATCCCAAATGCCCTCAACCAGAACTG
GCTCTTGGTGTTGAAGCTCACACAGATGTGAGTGCACTCACTTTCATTCT
TCACAACATGGTTCCGGGCCTGCAGCTCTTCTACAAAGACAAATGGGTGA
CTGCTAAATGTGTTCCAAATTCGATCATCTTGCACATTGGTGACACCATT
GAAATTCTGAGCAATGGCGAGTA
back to top