CF972318

Overview
NameCF972318
Unique NameCF972318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
sweet orange flesh cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3822 contig Csv1_Contig3822:137..859. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: ACCO_DENCR (1-aminocyclopropane-1-carboxylate oxidase OS=Dendrobium crumenatum GN=ACO PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.093e-16
Identity = 55/216 (25.46%), Postives = 97/216 (44.91%), Query Frame = 2
Query:   83 LKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQM--KINYYPKCPQPELALGVEAHTDVSALTFILHN-MVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSNGE 721
            L+ A  +WG   L+NHGIS +  E+ +   +  + +      +   ++ + K    G  +  +    L+WE  FF    P    ++S  P    D      E+A  L  LA ++L +                            K++ YP CP+PEL  G+ AHTD   +  +  +  V GLQL   ++W+    + +SI+++IGD +E+++NG+
Sbjct:   16 LRDACENWGFFELLNHGISHEPNEQSETVNKEHYREHYRRFREQRFKEFAAKTLDSGENVDGD---NLDWESTFFLRHLPTS--NISQVPDLDEDCGSTMKEFALGLEKLAERLLDLLCENLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDTVSGLQLLKDEEWIDVPPMRHSIVVNIGDQLEVITNGK 226          
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 61/250 (24.40%), Postives = 103/250 (41.20%), Query Frame = 2
Query:   14 VPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWED---YFFHLIYPEDKRDMSIWPKTPSDYTEAT------------SEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSNG 718
            +P +D+  +   D     +   ++  A    G   +  HG+   L          FF  P+ EK +    +  G + GY S  A+  + +L W++   + FH        D +  P   +DY  +T             +Y  +++ L+  I+ +                         M+ NYYP CP+PE  LG   H D +ALT +L + V GL++    +W     VP +++++IGDT   LSNG
Sbjct:   63 MPVVDVGVLRDGDAEGLRRAAAQVAAACATHGFFQVSEHGVDAALARAALDGASDFFRLPLAEKRRA--RRVPGTVSGYTSAHADRFASKLPWKETLSFGFH--------DRAAAPVV-ADYFSSTLGPDFAPMGRVYQKYCEEMKELSLTIMELLELSLGVERGYYREFFADSSSI---MRCNYYPPCPEPERTLGTGPHCDPTALTILLQDDVGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNG 298          
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 61/250 (24.40%), Postives = 103/250 (41.20%), Query Frame = 2
Query:   14 VPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWED---YFFHLIYPEDKRDMSIWPKTPSDYTEAT------------SEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSNG 718
            +P +D+  +   D     +   ++  A    G   +  HG+   L          FF  P+ EK +    +  G + GY S  A+  + +L W++   + FH        D +  P   +DY  +T             +Y  +++ L+  I+ +                         M+ NYYP CP+PE  LG   H D +ALT +L + V GL++    +W     VP +++++IGDT   LSNG
Sbjct:   63 MPVVDVGVLRDGDAEGLRRAAAQVAAACATHGFFQVSEHGVDAALARAALDGASDFFRLPLAEKRRA--RRVPGTVSGYTSAHADRFASKLPWKETLSFGFH--------DRAAAPVV-ADYFSSTLGPDFAPMGRVYQKYCEEMKELSLTIMELLELSLGVERGYYREFFADSSSI---MRCNYYPPCPEPERTLGTGPHCDPTALTILLQDDVGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNG 298          
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.191e-15
Identity = 63/244 (25.82%), Postives = 98/244 (40.16%), Query Frame = 2
Query:   14 VPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEAT---------SEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSNG 718
            VP ID+  + S D     +    + +A    G   +VNHGI  +L     R    FF  P+ EK++       G+  GY S      + +L W++       P D       P    DY  AT           YAR    ++   L +                         M++NYYP C +P   LG   H D ++LT +  + V GLQ+  + +W + +   ++ +++IGDT   LSNG
Sbjct:   39 VPLIDIGGMLSGDPAAAAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDNFFTMPLPEKQRALRHP--GESCGYASSFTGRFASKLPWKETLSFRSCPSD-------PALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNG 273          
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: GSL_ARATH (Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.653e-15
Identity = 58/234 (24.79%), Postives = 102/234 (43.59%), Query Frame = 2
Query:   14 VPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSN 715
            +PTIDL  +  E  V RE    ++K A   +G    +NHG+  D+ E++    + F DQ  E ++ +     + K++ Y S      S    W D    ++ P+  +   +    P    E   EY++++  LA  +  +                         M  + +P CP+P    G   HTD S LT +L++   GLQ+ Y   W+     P ++I ++GD ++++SN
Sbjct:   55 IPTIDLGGV-FESTVVRESVVAKVKDAMEKFGFFQAINHGVPLDVMEKMINGIRRFHDQDPEVRKMFYTRDKTKKLK-YHSNADLYESPAASWRDTLSCVMAPDVPKAQDL----PEVCGEIMLEYSKEVMKLAELMFEILSEALGLSPNHLKEMDCAKGLW---MLCHCFPPCPEPNRTFGGAQHTDRSFLTILLNDNNGGLQVLYDGYWIDVPPNPEALIFNVGDFLQLISN 279          
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: GAOX1_ORYSJ (Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.465e-15
Identity = 58/244 (23.77%), Postives = 110/244 (45.08%), Query Frame = 2
Query:   14 VPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDY--FFHLIYPEDKRDMSIWP----KTPSDYT----EATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSN 715
            V  +++  ID     ER     ++ +A    G   +VNHGI   L E   R   AFF  P+ EK++   ++ +G+  GY S      + +L W++   F +    +++ +  +      K  +++     E  S Y  ++  L+ +++ V                         M++NYYP C +P   LG   H D ++LT +  + V GL+++ + +W   +  P ++++++GDT   LSN
Sbjct:   41 VEELEVALIDVGAGAERSSVVRQVGEACERHGFFLVVNHGIEAALLEEAHRCMDAFFTLPLGEKQRA--QRRAGESCGYASSFTGRFASKLPWKETLSFRYSSAGDEEGEEGVGEYLVRKLGAEHGRRLGEVYSRYCHEMSRLSLELMEVLGESLGIVGDRRHYFRRFFQRNDSIMRLNYYPACQRPLDTLGTGPHCDPTSLTILHQDHVGGLEVWAEGRWRAIRPRPGALVVNVGDTFMALSN 282          
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.465e-15
Identity = 62/244 (25.41%), Postives = 98/244 (40.16%), Query Frame = 2
Query:   14 VPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEAT---------SEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSNG 718
            VP I++  + S D     +    + +A    G   +VNHGI  +L     R    FF  P+ EK++       G+  GY S      + +L W++       P D       P    DY  AT           YAR    ++   L +                         M++NYYP C +P   LG   H D ++LT +  + V GLQ+  + +W + +   ++ +++IGDT   LSNG
Sbjct:   39 VPLINIGGMLSGDAAAAAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDNFFTMPLPEKQRALRRP--GESCGYASSFTGRFASKLPWKETLSFRSCPSD-------PALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNG 273          
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.720e-14
Identity = 51/241 (21.16%), Postives = 109/241 (45.23%), Query Frame = 2
Query:   14 VPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPE--DKRDMSIWPKTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPE---LALGVEAHTDVSALTFILHNMVPGLQLFYKD-KWVTAKCVPNSIILHIGDTIEILSNG 718
            +P ++L + +++ R+          KA  ++G   +VNHG+  +L  R+++    FF  P    +   N     +  GYG+K     +G + W +Y      P+    +  +++ +TP  + E+  EY ++++ ++ K+L +                         +++N+YP   +     + +G   HTD   ++ +  N   GLQ+  KD  WV      +S  +++GD +++++NG
Sbjct:   31 IPVVNLADPEAKTRIV---------KACEEFGFFKVVNHGVRPELMTRLEQEAIGFFGLP----QSLKNRAGPPEPYGYGNKRI-GPNGDVGWIEYLLLNANPQLSSPKTSAVFRQTPQIFRESVEEYMKEIKEVSYKVLEMVAEELGIEPRDTLSKMLRDEKSDSCLRLNHYPAAEEEAEKMVKVGFGEHTDPQIISVLRSNNTAGLQICVKDGSWVAVPPDHSSFFINVGDALQVMTNG 257          
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: G2OX1_PEA (Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.831e-14
Identity = 54/240 (22.50%), Postives = 104/240 (43.33%), Query Frame = 2
Query:   14 VPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQ----PELALGVEAHTDVSALTFILHNMVPGLQLFYKD-KWVTAKCVPNSIILHIGDTIEILSNG 718
            +P +DL + D++  +          KA  D+G   ++NHGI  D   +++     FF  P  EKEK           GYG+K     +G + W +Y   L+      + S++ +    +     +Y   +R++A +IL +                          ++N+YP CP+     E  +G   HTD   ++ +  N   G Q+  +D  W++     +S  +++GD++++++NG
Sbjct:   27 IPLVDLSKPDAKTLIV---------KACEDFGFFKVINHGIPLDAISQLESEAFKFFSLPQTEKEK----AGPANPFGYGNKRI-GLNGDIGWIEYL--LLTTNQDHNFSLYGEDIDKFRGLLKDYKCAMRNMACEILDLMAEGLKIQPKNVFSKLVMDKQSDCLFRVNHYPACPELAINGENLIGFGEHTDPQIISILRSNNTSGFQISLRDGSWISVPPDHSSFFINVGDSLQVMTNG 250          
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: G2OX3_ARATH (Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=GA2OX3 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.534e-14
Identity = 56/240 (23.33%), Postives = 109/240 (45.42%), Query Frame = 2
Query:   14 VPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFF--HLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPEL--ALGVEAHTDVSALTFILHNMVPGLQLFYKD-KWVTAKCVPNSIILHIGDTIEILSNG 718
            +P IDL + D+         + ++ KA  ++G   ++NHG+  DL  ++++    FF      K+K           GYG+K     +G L W +Y      +  E  +  +I+  TP+ + EA  EY ++++ +++K L +                         +++N+YP+  +  +   +G   HTD   ++ +  N   GLQ+  KD  WV      +S  + +GDT+++++NG
Sbjct:   27 IPVIDLTDSDA---------KTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAINFFALHHSLKDKAGPPDPF----GYGTKRI-GPNGDLGWLEYILLNANLCLESHKTTAIFRHTPAIFREAVEEYIKEMKRMSSKFLEMVEEELKIEPKEKLSRLVKVKESDSCLRMNHYPEKEETPVKEEIGFGEHTDPQLISLLRSNDTEGLQICVKDGTWVDVTPDHSSFFVLVGDTLQVMTNG 252          
The following BLAST results are available for this feature:
BLAST of CF972318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
ACCO_DENCR4.093e-1625.461-aminocyclopropane-1-carboxylate oxidase OS=Dendr... [more]
GAOX2_ORYSJ6.981e-1624.40Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI6.981e-1624.40Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
GAO1D_WHEAT1.191e-1525.82Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
GSL_ARATH2.653e-1524.79Probable 2-oxoacid dependent dioxygenase OS=Arabid... [more]
GAOX1_ORYSJ3.465e-1523.77Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. ja... [more]
GAO1A_WHEAT3.465e-1525.41Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]
G2OX2_ARATH1.720e-1421.16Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]
G2OX1_PEA3.831e-1422.50Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum ... [more]
G2OX3_ARATH6.534e-1423.33Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionANS-partial sweet orange flesh cDNA Citrus sinensis cDNA similar to partial anthocyanidin synthase, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF972318 ID=CF972318; Name=CF972318; organism=Citrus sinensis; type=EST; length=723bp
TGAAGGGCCTCAAGTTCCCACAATTGATCTCAAGGAAATTGACTCTGAGG
ACAGAGTTGAACGCGAGAAATGTCGCGAGGAGCTCAAGAAAGCTGCCATG
GATTGGGGTGTTATGCACCTTGTTAACCATGGGATTTCGGATGATCTCAC
TGAACGCGTCAAGAGAGCCGGTCAGGCCTTTTTCGATCAGCCGGTTGAGG
AGAAAGAGAAGTATGCCAATGAGCAGGCTTCGGGAAAGATTCAGGGTTAC
GGAAGCAAGCTAGCTAATAATGCTAGTGGCCAGCTTGAGTGGGAGGACTA
TTTCTTCCACCTTATTTATCCTGAAGATAAAAGGGATATGTCCATTTGGC
CTAAGACTCCAAGCGACTATACAGAGGCTACCAGTGAATACGCAAGGCAA
CTGAGAAGCCTAGCGACGAAAATTCTGGCAGTGTTGTCACTTGGCTTGGG
ACTGGAAGAGGGGAGGCTGGAAAAGGAAGTTGGTGGCCTAGAAGAGCTCC
TTCTTCAGATGAAGATCAATTACTATCCCAAATGCCCTCAACCAGAACTG
GCTCTTGGTGTTGAAGCTCACACAGATGTGAGTGCACTCACTTTCATTCT
TCACAACATGGTTCCGGGCCTGCAGCTCTTCTACAAAGACAAATGGGTGA
CTGCTAAATGTGTTCCAAATTCGATCATCTTGCACATTGGTGACACCATT
GAAATTCTGAGCAATGGCGAGTA
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