CF972318

Overview
NameCF972318
Unique NameCF972318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
sweet orange flesh cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3822 contig Csv1_Contig3822:137..859. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: G2OX1_ARATH (Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.534e-14
Identity = 59/247 (23.89%), Postives = 103/247 (41.70%), Query Frame = 2
Query:   14 VPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYG-SKLANNASGQLEWEDYFFHLIYPEDKRDMSIWP---KTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQP-------ELALGVEAHTDVSALTFILHNMVPGLQLFYKD-KWVTAKCVPNSIILHIGDTIEILSNG 718
            +P ID+ + +S         +  L KA  D+G   ++NHG+S +L   ++     FF  P  EK      Q +G   GYG SK+  N  G + W +Y   +    D     ++P   K+P  +  A  EY   +R +   +L                           +++N+YP CP         +  +G   HTD   ++ +  N   GLQ+   D  W++      S   ++GD++++++NG
Sbjct:   18 IPVIDMSDPES---------KHALVKACEDFGFFKVINHGVSAELVSVLEHETVDFFSLPKSEK-----TQVAGYPFGYGNSKIGRN--GDVGWVEYLL-MNANHDSGSGPLFPSLLKSPGTFRNALEEYTTSVRKMTFDVLEKITDGLGIKPRNTLSKLVSDQNTDSILRLNHYPPCPLSNKKTNGGKNVIGFGEHTDPQIISVLRSNNTSGLQINLNDGSWISVPPDHTSFFFNVGDSLQVMTNG 247          
BLAST of CF972318 vs. ExPASy Swiss-Prot
Match: G2OX_PHACN (Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 51/242 (21.07%), Postives = 99/242 (40.91%), Query Frame = 2
Query:   14 VPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPE--DKRDMSIWPKTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPEL----ALGVEAHTDVSALTFILHNMVPGLQLFYKD-KWVTAKCVPNSIILHIGDTIEILSNG 718
            +P +DL   D+++ +           A  D+G   LVNHG+  +L   ++     FF +   EK++           GYGSK     +G + W +Y      P+    + + I+ + P  +      Y   ++++   +L +                          ++N+YP CP+ +      +G   HTD   ++ +  N   GLQ+   D  WV+      S  +++GD +++++NG
Sbjct:   27 IPVVDLTHPDAKNLIVN---------ACRDFGFFKLVNHGVPLELMANLENEALRFFKKSQSEKDRAGPPDPF----GYGSKRI-GPNGDVGWVEYLLLNTNPDVISPKSLCIFRENPHHFRAVVENYITAVKNMCYAVLELMAEGLGIRQRNTLSRLLKDEKSDSCFRLNHYPPCPEVQALNRNLVGFGEHTDPQIISVLRSNSTSGLQICLTDGTWVSVPPDQTSFFINVGDALQVMTNG 254          
The following BLAST results are available for this feature:
BLAST of CF972318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
G2OX1_ARATH6.534e-1423.89Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis th... [more]
G2OX_PHACN1.232e-1221.07Gibberellin 2-beta-dioxygenase OS=Phaseolus coccin... [more]

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Properties
Property NameValue
Genbank descriptionANS-partial sweet orange flesh cDNA Citrus sinensis cDNA similar to partial anthocyanidin synthase, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF972318 ID=CF972318; Name=CF972318; organism=Citrus sinensis; type=EST; length=723bp
TGAAGGGCCTCAAGTTCCCACAATTGATCTCAAGGAAATTGACTCTGAGG
ACAGAGTTGAACGCGAGAAATGTCGCGAGGAGCTCAAGAAAGCTGCCATG
GATTGGGGTGTTATGCACCTTGTTAACCATGGGATTTCGGATGATCTCAC
TGAACGCGTCAAGAGAGCCGGTCAGGCCTTTTTCGATCAGCCGGTTGAGG
AGAAAGAGAAGTATGCCAATGAGCAGGCTTCGGGAAAGATTCAGGGTTAC
GGAAGCAAGCTAGCTAATAATGCTAGTGGCCAGCTTGAGTGGGAGGACTA
TTTCTTCCACCTTATTTATCCTGAAGATAAAAGGGATATGTCCATTTGGC
CTAAGACTCCAAGCGACTATACAGAGGCTACCAGTGAATACGCAAGGCAA
CTGAGAAGCCTAGCGACGAAAATTCTGGCAGTGTTGTCACTTGGCTTGGG
ACTGGAAGAGGGGAGGCTGGAAAAGGAAGTTGGTGGCCTAGAAGAGCTCC
TTCTTCAGATGAAGATCAATTACTATCCCAAATGCCCTCAACCAGAACTG
GCTCTTGGTGTTGAAGCTCACACAGATGTGAGTGCACTCACTTTCATTCT
TCACAACATGGTTCCGGGCCTGCAGCTCTTCTACAAAGACAAATGGGTGA
CTGCTAAATGTGTTCCAAATTCGATCATCTTGCACATTGGTGACACCATT
GAAATTCTGAGCAATGGCGAGTA
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