CK702010

Overview
NameCK702010
Unique NameCK702010
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length250
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK702010_ssr1 microsatellite CK702010_ssr1:1..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK702010 vs. ExPASy Swiss-Prot
Match: CRK38_ARATH (Cysteine-rich receptor-like protein kinase 38 OS=Arabidopsis thaliana GN=CRK38 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.406e-11
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 1
Query:   40 DNFLGKGGFGRVYKGTLRSGEVVAIKKMELPRFKEADGEHEFRVEVDILSRLDHPNLVSLIGYCAHG 240
            +N +G+GGFG VYKG L  GE +A+K++         GE EFR EV +L+RL H NLV L+G+C  G
Sbjct:  342 ENKIGQGGFGSVYKGKLPGGEEIAVKRLTRG---SGQGEIEFRNEVLLLTRLQHRNLVKLLGFCNEG 405          
BLAST of CK702010 vs. ExPASy Swiss-Prot
Match: CRK35_ARATH (Putative cysteine-rich receptor-like protein kinase 35 OS=Arabidopsis thaliana GN=CRK35 PE=3 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.406e-11
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 1
Query:   37 DDNFLGKGGFGRVYKGTLRSGEVVAIKKMELPRFKEADGEHEFRVEVDILSRLDHPNLVSLIGYCAHGKHR 249
            D N +G+GGFG VY+G L SG  VA+K++         G  EF+ E  ++S+L H NLV L+G+C  G+ +
Sbjct:  347 DSNMIGRGGFGEVYRGKLSSGPEVAVKRLSK---TSGQGAEEFKNEAVLVSKLQHKNLVRLLGFCLEGEEK 414          
BLAST of CK702010 vs. ExPASy Swiss-Prot
Match: ANX1_ARATH (Receptor-like protein kinase ANXUR1 OS=Arabidopsis thaliana GN=ANX1 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.406e-11
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 1
Query:   37 DDNFLGKGGFGRVYKGTLRSGEVVAIKKMELPRFKEADGEHEFRVEVDILSRLDHPNLVSLIGYCAHG 240
            D N +G GGFG+VYKG +     VA+KK   P  ++  G +EF  E+++LSRL H +LVSLIGYC  G
Sbjct:  519 DSNVIGVGGFGKVYKGVIDGTTKVAVKKSN-PNSEQ--GLNEFETEIELLSRLRHKHLVSLIGYCDEG 583          
BLAST of CK702010 vs. ExPASy Swiss-Prot
Match: RLK6_ARATH (Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana GN=At3g21340 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.672e-11
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   40 DNFLGKGGFGRVYKGTLRSGEVVAIKKMELPRFKEADGEHEFRVEVDILSRLDHPNLVSLIGYCAHGKH 246
            +  LGKGGFG VY GT+ + E VA+K +       + G  EF+ EV++L R+ H NLV L+GYC  G++
Sbjct:  595 ERVLGKGGFGMVYHGTVNNTEQVAVKMLS---HSSSQGYKEFKAEVELLLRVHHKNLVGLVGYCDEGEN 660          
BLAST of CK702010 vs. ExPASy Swiss-Prot
Match: CRK36_ARATH (Cysteine-rich receptor-like protein kinase 36 OS=Arabidopsis thaliana GN=CRK36 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.672e-11
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 1
Query:   40 DNFLGKGGFGRVYKGTLRSGEVVAIKKMELPRFKEADGEHEFRVEVDILSRLDHPNLVSLIGYCAHG 240
            +N LG+GGFG VYKG L SG+ +A+K++         GE EF+ EV +L+RL H NLV L+G+C  G
Sbjct:  343 ENKLGQGGFGSVYKGILPSGQEIAVKRL---AGGSGQGELEFKNEVLLLTRLQHRNLVKLLGFCNEG 406          
BLAST of CK702010 vs. ExPASy Swiss-Prot
Match: CRK28_ARATH (Cysteine-rich receptor-like protein kinase 28 OS=Arabidopsis thaliana GN=CRK28 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.672e-11
Identity = 29/70 (41.43%), Postives = 45/70 (64.29%), Query Frame = 1
Query:   40 DNFLGKGGFGRVYKGTLRSGEVVAIKKMELPRFKEADGEHEFRVEVDILSRLDHPNLVSLIGYCAHGKHR 249
            +N LG+GGFG VYKG    G+ +A+K++         G+ EF+ E+ +L++L H NLV L+G+C  G+ R
Sbjct:  364 ENELGRGGFGSVYKGVFSGGQEIAVKRLSCT---SGQGDSEFKNEILLLAKLQHRNLVRLLGFCIEGQER 430          
The following BLAST results are available for this feature:
BLAST of CK702010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
CRK38_ARATH7.406e-1149.25Cysteine-rich receptor-like protein kinase 38 OS=A... [more]
CRK35_ARATH7.406e-1142.25Putative cysteine-rich receptor-like protein kinas... [more]
ANX1_ARATH7.406e-1150.00Receptor-like protein kinase ANXUR1 OS=Arabidopsis... [more]
RLK6_ARATH9.672e-1144.93Receptor-like protein kinase At3g21340 OS=Arabidop... [more]
CRK36_ARATH9.672e-1149.25Cysteine-rich receptor-like protein kinase 36 OS=A... [more]
CRK28_ARATH9.672e-1141.43Cysteine-rich receptor-like protein kinase 28 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5271 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE44E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK702010 ID=CK702010; Name=CK702010; organism=Citrus sinensis; type=EST; length=250bp
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGATGACAACTTTCT
TGGGAAAGGGGGGTTTGGCCGAGTTTACAAGGGCACTCTGCGGTCAGGAG
AGGTGGTTGCAATCAAGAAAATGGAGCTGCCACGATTTAAAGAAGCTGAC
GGGGAACACGAGTTCCGCGTAGAAGTTGATATCTTGAGCAGACTTGACCA
TCCAAATCTGGTCTCTTTGATAGGCTATTGTGCACATGGGAAGCACCGGT
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