CK740118

Overview
NameCK740118
Unique NameCK740118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9870 contig Csv1_Contig9870:1168..1610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740118 vs. ExPASy Swiss-Prot
Match: SPEA_PROM3 (Biosynthetic arginine decarboxylase OS=Prochlorococcus marinus (strain MIT 9303) GN=speA PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.139e-12
Identity = 26/73 (35.62%), Postives = 44/73 (60.27%), Query Frame = 1
Query:  100 YYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPQLMFETLKHRAE 318
            Y +GMFL GAY+E +G +HNLFG  + V +  + G   + +   + G +  +VL  M+H P+++ E L+  +E
Sbjct:  545 YMIGMFLAGAYQEVMGNLHNLFGSTNAVHIRMTTG-GGYQIDHVVRGNTNSEVLEAMEHNPEILLERLRLASE 616          

HSP 2 Score: 33.113 bits (74), Expect = 1.139e-12
Identity = 15/25 (60.00%), Postives = 18/25 (72.00%), Query Frame = 3
Query:    3 CDSDGKIDKFIGGG---TSLPLHEM 68
            CDSDGK+D+FIG G   T L LH +
Sbjct:  515 CDSDGKLDRFIGNGQTKTLLELHNL 539          
BLAST of CK740118 vs. ExPASy Swiss-Prot
Match: SPEA_GLOVI (Biosynthetic arginine decarboxylase OS=Gloeobacter violaceus GN=speA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.921e-12
Identity = 32/78 (41.03%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   97 PYYLGMFLGGAYEEALGGVHNLFGGPSVVRV-LQSD--GPHSFAVTRAMPGPSCGDVLRVMQHEPQLMFETLKHRAEE 321
            PYYLGMFL GAY+E LG +HNLFG  + V + L SD  G  S+ +   + G +  +VL+ +Q++ + M E+++   E+
Sbjct:  527 PYYLGMFLNGAYQEILGDMHNLFGDTNTVHIHLASDEPGEQSYRLEHVVKGDTMTEVLKYVQYDHEAMLESIRRETEQ 604          

HSP 2 Score: 26.5646 bits (57), Expect = 1.921e-12
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 3
Query:    3 CDSDGKIDKFI 35
            CDSDGKID+FI
Sbjct:  498 CDSDGKIDQFI 508          
BLAST of CK740118 vs. ExPASy Swiss-Prot
Match: SPEA_PROMM (Biosynthetic arginine decarboxylase OS=Prochlorococcus marinus (strain MIT 9313) GN=speA PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 3.239e-12
Identity = 29/74 (39.19%), Postives = 45/74 (60.81%), Query Frame = 1
Query:  100 YYLGMFLGGAYEEALGGVHNLFGGPSVVRV-LQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPQLMFETLKHRAE 318
            Y +GMFL GAY+E +G +HNLFG  + V + L + G   + V   + G +  +VL  M+H P+L+ E L+  +E
Sbjct:  545 YMIGMFLAGAYQEVMGNLHNLFGSTNAVHIRLTTAG--GYQVDHVVRGNTNSEVLEAMEHNPELLLERLRLASE 616          

HSP 2 Score: 33.113 bits (74), Expect = 3.239e-12
Identity = 15/25 (60.00%), Postives = 18/25 (72.00%), Query Frame = 3
Query:    3 CDSDGKIDKFIGGG---TSLPLHEM 68
            CDSDGK+D+FIG G   T L LH +
Sbjct:  515 CDSDGKLDRFIGNGQTKTLLELHNL 539          
BLAST of CK740118 vs. ExPASy Swiss-Prot
Match: SPE1_AVESA (Arginine decarboxylase OS=Avena sativa GN=SPE1 PE=1 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 9.219e-12
Identity = 29/77 (37.66%), Postives = 47/77 (61.04%), Query Frame = 1
Query:   94 GPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHE-PQLMFETLKHRAEE 321
            G YY+ + L GAY+EAL   HNLFGGPS+VRV+ +    +F V  A+ G +  +++  + ++  Q +   ++ RA E
Sbjct:  501 GGYYVAVLLTGAYQEALSNKHNLFGGPSLVRVVGTGNGGAFNVEAALLGSTTEELIGTVSYDVKQDISSVIEERARE 577          

HSP 2 Score: 34.2686 bits (77), Expect = 9.219e-12
Identity = 13/22 (59.09%), Postives = 17/22 (77.27%), Query Frame = 3
Query:    3 CDSDGKIDKFIGGGTSLPLHEM 68
            CDSDGK+DKFI    ++PLH +
Sbjct:  475 CDSDGKVDKFIRDTETMPLHPL 496          
BLAST of CK740118 vs. ExPASy Swiss-Prot
Match: SPEA1_SYNY3 (Biosynthetic arginine decarboxylase 1 OS=Synechocystis sp. (strain PCC 6803) GN=speA1 PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 2.009e-11
Identity = 28/75 (37.33%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   97 PYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPQLMFETLKHRAEE 321
            PYYLGMFL GAY+E +G +HNLFG  +VV +  +  P  + +   + G +  +VL  +Q++P+ + E ++   E+
Sbjct:  585 PYYLGMFLVGAYQEIMGNLHNLFGDINVVHIQMN--PKGYQIEHLVRGDTIAEVLGYVQYDPEDLLENMRRYCEQ 657          

HSP 2 Score: 26.5646 bits (57), Expect = 2.009e-11
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 3
Query:    3 CDSDGKIDKFI 35
            CDSDGKID+FI
Sbjct:  547 CDSDGKIDQFI 557          
BLAST of CK740118 vs. ExPASy Swiss-Prot
Match: SPEA_ANASP (Biosynthetic arginine decarboxylase OS=Anabaena sp. (strain PCC 7120) GN=speA PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 4.396e-11
Identity = 26/74 (35.14%), Postives = 45/74 (60.81%), Query Frame = 1
Query:   97 PYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPQLMFETLKHRAE 318
            PYY+GMFL GAY+E +G +HNLFG  + V +  +  P  + +   + G +  +V+  +Q++ + M E ++ R E
Sbjct:  576 PYYMGMFLNGAYQEIMGNLHNLFGDTNAVHIQLT--PKGYQIEHVVKGDTMSEVVSYVQYDSEDMVENIRQRCE 647          

HSP 2 Score: 26.9498 bits (58), Expect = 4.396e-11
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 3
Query:    3 CDSDGKIDKFI 35
            CDSDGKID+FI
Sbjct:  547 CDSDGKIDRFI 557          
The following BLAST results are available for this feature:
BLAST of CK740118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
SPEA_PROM31.139e-1235.62Biosynthetic arginine decarboxylase OS=Prochloroco... [more]
SPEA_GLOVI1.921e-1241.03Biosynthetic arginine decarboxylase OS=Gloeobacter... [more]
SPEA_PROMM3.239e-1239.19Biosynthetic arginine decarboxylase OS=Prochloroco... [more]
SPE1_AVESA9.219e-1237.66Arginine decarboxylase OS=Avena sativa GN=SPE1 PE=... [more]
SPEA1_SYNY32.009e-1137.33Biosynthetic arginine decarboxylase 1 OS=Synechocy... [more]
SPEA_ANASP4.396e-1135.14Biosynthetic arginine decarboxylase OS=Anabaena sp... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6612 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740118 ID=CK740118; Name=CK740118; organism=Citrus sinensis; type=EST; length=444bp
CTTGTGATAGTGATGGTAAGATTGATAAGTTCATTGGTGGTGGTACGAGC
TTGCCGTTACATGAAATGGTTGGTGGTGGTTGTGGTGAGCCGTGGGCCTT
ATTATTTGGGGATGTTCTTGGGTGGGGCTTATGAGGAGGCCCTCGGTGGA
GTCCACAACTTGTTTGGTGGTCCAAGCGTGGTACGCGTCTTGCAGAGTGA
TGGTCCGCACAGCTTTGCTGTGACTCGGGCCATGCCTGGGCCGTCTTGTG
GGGATGTCCTCCGGGTGATGCAGCACGAGCCCCAGCTCATGTTTGAGACC
CTCAAACACCGTGCTGAGGAATATTGTGGACAGGAGCATGGTAGTAATGG
TGGGGATGGTGATACTGATGATTACCATCACGGCATGGCTAATAATTCTG
CTTTAGCTAGCAGCCTTGCTCAGTACTTTCACAGCATGCCATAT
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