CK740127

Overview
NameCK740127
Unique NameCK740127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length398
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:192..589. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_PSEFS (Nucleoside diphosphate kinase OS=Pseudomonas fluorescens (strain SBW25) GN=ndk PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.488e-19
Identity = 47/111 (42.34%), Postives = 67/111 (60.36%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 333
            I  RFEK G  +   KL  + +  AE  Y + S++ FFG L+ ++ SGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EI+ +F
Sbjct:   23 ITTRFEKAGLKVVASKLKQLSKAEAEGFYAEHSARGFFGDLVAFMISGPVVVQVLEGENAIALNRELMGATNPKEAAAGTIRADFAESIDANAVHGSDSEAAAAREISYFF 133          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_NEIMF (Nucleoside diphosphate kinase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=ndk PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.488e-19
Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 333
            I  RFE+ G  +   K+  +    A++ Y     +PF+  L+E++T GPV+  + EGE  V   R ++GATNP+++A GTIR D A     N +HGSDSVE+A  EIA +F
Sbjct:   23 IYSRFEENGLKIVAAKMKQLTLKEAQEFYAVHKDRPFYAGLVEFMTGGPVMIQVLEGENAVLKNRELMGATNPSEAAEGTIRADFATSVSINAVHGSDSVENAALEIAYFF 133          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_NEIMB (Nucleoside diphosphate kinase OS=Neisseria meningitidis serogroup B GN=ndk PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.488e-19
Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 333
            I  RFE+ G  +   K+  +    A++ Y     +PF+  L+E++T GPV+  + EGE  V   R ++GATNP+++A GTIR D A     N +HGSDSVE+A  EIA +F
Sbjct:   23 IYSRFEENGLKIVAAKMKQLTLKEAQEFYAVHKDRPFYAGLVEFMTGGPVMIQVLEGENAVLKNRELMGATNPSEAAEGTIRADFATSVSINAVHGSDSVENAALEIAYFF 133          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_NEIMA (Nucleoside diphosphate kinase OS=Neisseria meningitidis serogroup A GN=ndk PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.488e-19
Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 333
            I  RFE+ G  +   K+  +    A++ Y     +PF+  L+E++T GPV+  + EGE  V   R ++GATNP+++A GTIR D A     N +HGSDSVE+A  EIA +F
Sbjct:   23 IYSRFEENGLKIVAAKMKQLTLKEAQEFYAVHKDRPFYAGLVEFMTGGPVMIQVLEGENAVLKNRELMGATNPSEAAEGTIRADFATSVSINAVHGSDSVENAALEIAYFF 133          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_CHLCV (Nucleoside diphosphate kinase OS=Chlamydophila caviae GN=ndk PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.488e-19
Identity = 48/111 (43.24%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 333
            I+  FEK GF +  +K++ +    AE  Y    S+PFF  L++++ SGPVV M+ EG+  V   R I+GATNP ++A GTIR       G N +HGSDS+E+A  EI  +F
Sbjct:   21 IVAIFEKSGFRIAAMKMVHLSVKEAEGFYAVHKSRPFFQELVDFMISGPVVVMVLEGDNAVVRNREIMGATNPQEAAQGTIRAQFGESIGINAVHGSDSLENAAIEINYFF 131          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_BEII9 (Nucleoside diphosphate kinase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=ndk PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.488e-19
Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = 1
Query:   16 EKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 333
            EK G  +   K + + +  AE  Y   S++PFFG L+E + SGPVV  + EGE  +K  R ++GAT+PA++  GTIR + A+  G N  HGSD+ E+A  EIA WF
Sbjct:   28 EKAGLRIIAQKRVLITKAQAETFYAVHSARPFFGELVESMISGPVVVQVLEGEDAIKKYREVLGATDPAKADAGTIRKEFALSVGENSAHGSDAPETAAVEIAQWF 133          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_AGRRK (Nucleoside diphosphate kinase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=ndk PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.488e-19
Identity = 49/112 (43.75%), Postives = 66/112 (58.93%), Query Frame = 1
Query:   13 FEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 348
            FE  G  +   K + + +  AE  Y     +PFFG L++ +TSGP V  + EGEG +   R I+GATNPA +A GTIR   A+  G N +HGSD+ E+A  EIA WF +  I
Sbjct:   27 FEDNGLRVIASKRVWMSKREAEGFYAVHKERPFFGELVDGMTSGPTVVQVLEGEGAILKNREIMGATNPANAAEGTIRKIHALSIGENSVHGSDAPETAAVEIAYWFSETEI 138          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_PSEU2 (Nucleoside diphosphate kinase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=ndk PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.943e-19
Identity = 47/111 (42.34%), Postives = 67/111 (60.36%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 333
            I  RFEK G  +   KL  + +  AE  Y + S++ FFG L+ ++ SGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EI+ +F
Sbjct:   23 ITTRFEKAGLRVVASKLKQLSKAEAEGFYAEHSARGFFGDLVAFMISGPVVVQVLEGENAIALNRELMGATNPKEAAAGTIRADFADSIDANAVHGSDSEAAAAREISYFF 133          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_PSESM (Nucleoside diphosphate kinase OS=Pseudomonas syringae pv. tomato GN=ndk PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.943e-19
Identity = 47/111 (42.34%), Postives = 67/111 (60.36%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 333
            I  RFEK G  +   KL  + +  AE  Y + S++ FFG L+ ++ SGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EI+ +F
Sbjct:   23 ITTRFEKAGLRVVASKLKQLSKAEAEGFYAEHSARGFFGDLVAFMISGPVVVQVLEGENAIALNRELMGATNPKEAAAGTIRADFADSIDANAVHGSDSEAAAAREISYFF 133          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_PSE14 (Nucleoside diphosphate kinase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=ndk PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.943e-19
Identity = 47/111 (42.34%), Postives = 67/111 (60.36%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 333
            I  RFEK G  +   KL  + +  AE  Y + S++ FFG L+ ++ SGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EI+ +F
Sbjct:   23 ITTRFEKAGLRVVASKLKQLSKAEAEGFYAEHSARGFFGDLVAFMISGPVVVQVLEGENAIALNRELMGATNPKEAAAGTIRADFADSIDANAVHGSDSEAAAAREISYFF 133          
The following BLAST results are available for this feature:
BLAST of CK740127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_PSEFS1.488e-1942.34Nucleoside diphosphate kinase OS=Pseudomonas fluor... [more]
NDK_NEIMF1.488e-1941.44Nucleoside diphosphate kinase OS=Neisseria meningi... [more]
NDK_NEIMB1.488e-1941.44Nucleoside diphosphate kinase OS=Neisseria meningi... [more]
NDK_NEIMA1.488e-1941.44Nucleoside diphosphate kinase OS=Neisseria meningi... [more]
NDK_CHLCV1.488e-1943.24Nucleoside diphosphate kinase OS=Chlamydophila cav... [more]
NDK_BEII91.488e-1944.34Nucleoside diphosphate kinase OS=Beijerinckia indi... [more]
NDK_AGRRK1.488e-1943.75Nucleoside diphosphate kinase OS=Agrobacterium rad... [more]
NDK_PSEU21.943e-1942.34Nucleoside diphosphate kinase OS=Pseudomonas syrin... [more]
NDK_PSESM1.943e-1942.34Nucleoside diphosphate kinase OS=Pseudomonas syrin... [more]
NDK_PSE141.943e-1942.34Nucleoside diphosphate kinase OS=Pseudomonas syrin... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6621 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE6G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740127 ID=CK740127; Name=CK740127; organism=Citrus sinensis; type=EST; length=398bp
ATCATCATCAGATTTGAGAAGAAGGGTTTCTCTTTGAAGGGTTTGAAGCT
TATGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCAT
CGAAGCCTTTCTTTGGTTCTCTGATTGAGTACATTACCTCTGGTCCTGTT
GTTGCTATGATTTGGGAGGGTGAAGGTGTTGTTAAGACTGGCCGCACTAT
TATTGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAACCATCCGTGGTG
ATTTGGCTATCGTGACGGGCAGGAATATTATCCATGGAAGTGACTCAGTT
GAGAGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGATGGCCCTATTAA
CTGGCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAACTAATGTTTG
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