CK740128

Overview
NameCK740128
Unique NameCK740128
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12798 contig Csv1_Contig12798:267..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740128 vs. ExPASy Swiss-Prot
Match: Y090_HAEIN (UPF0001 protein HI0090 OS=Haemophilus influenzae GN=HI0090 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.392e-28
Identity = 84/184 (45.65%), Postives = 111/184 (60.33%), Query Frame = 3
Query:    3 ENYVQEIVEKAAQLPD---DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMP-DYTSTPEN-FKTLAKCRSEVCKALGIPEEQCD-LSMGMSGDFELAIEMGSTNVRIGSTIFGAREY 536
            ENYVQE VEK         +LEWHFIG LQSNK + +     +   ++++D  KIA RLN    T  + PL VL+Q+N S EESKSG++P   L L KH+ +N P+L   GLM I  P D  +  EN F+ + +   ++ + L  P +Q D LSMGM+ D   AI+ GST VRIG+ IFGAR Y
Sbjct:   55 ENYVQEGVEKIQYFESQGINLEWHFIGPLQSNKTRLV---AEHFDWMQTLDRAKIADRLNEQRPT-NKAPLNVLIQINISDEESKSGIQPEEMLTLAKHI-ENLPHLCLRGLMAIPAPTDNIAEQENAFRKMLELFEQLKQVL--PNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNY 231          
BLAST of CK740128 vs. ExPASy Swiss-Prot
Match: YPI1_VIBAL (UPF0001 protein in pilT-proC intergenic region OS=Vibrio alginolyticus PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.100e-28
Identity = 88/185 (47.57%), Postives = 109/185 (58.92%), Query Frame = 3
Query:    3 ENYVQEIVEK----AAQLPDD-LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTI--GMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREY 536
            ENYVQE V K    A   PD+ +EWHFIG +QSNK + +     +   V ++D  KIA RLN        KPL+VL+QVNTSGE SKSGV  +   EL + +S+  PNL   GLM+I   + DY S    F+ LA  +  +      PE    LSMGMSGD   AIE GST VRIG+ IFGAR+Y
Sbjct:   56 ENYVQEGVSKVQHFAEHYPDNRIEWHFIGPIQSNKSRLV---AEHFDWVHTIDRTKIAQRLNDQ-RPSELKPLQVLIQVNTSGEASKSGVTEAEVFELAELISR-LPNLTLRGLMSIPANVSDYESQLHEFQKLATLKQTL--EAQFPEIDT-LSMGMSGDMTAAIEAGSTMVRIGTAIFGARDY 232          
BLAST of CK740128 vs. ExPASy Swiss-Prot
Match: Y274_AQUAE (UPF0001 protein aq_274 OS=Aquifex aeolicus GN=aq_274 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.428e-27
Identity = 78/183 (42.62%), Postives = 108/183 (59.02%), Query Frame = 3
Query:    3 ENYVQEIVEKAAQLPD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPEN----FKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREY 536
            EN VQE ++K   L D DLEWHFIG LQ+NKVK L+  V    ++ S+D + +A  + +           VL++VN  GEE+K GVEP    EL ++  +  PN++  GLMTI  P Y   PE+    F+ L + R E+ +   +      LSMGMS DFE+AIE G+T VRIG+ +FG R+Y
Sbjct:   55 ENRVQEFLKKYEALKDLDLEWHFIGRLQTNKVKYLMGKV---VLIHSLDRKNLADEIQKRA-FKNNIVQDVLIEVNVGGEETKGGVEPENLKELFEYTLE-LPNVKVLGLMTI--PPYLENPEDVRPYFRKLRELRDELQREYNVALPH--LSMGMSHDFEVAIEEGATIVRIGTLLFGERKY 228          
BLAST of CK740128 vs. ExPASy Swiss-Prot
Match: Y394_PSEAE (UPF0001 protein PA0394 OS=Pseudomonas aeruginosa GN=PA0394 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.219e-24
Identity = 80/180 (44.44%), Postives = 99/180 (55.00%), Query Frame = 3
Query:    3 ENYVQEIVEKAAQLPD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKA-LGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREY 536
            ENY+QE + K A+L D  L WHFIG +QSNK +P+     +   V SVD  KIA RL+      G  PL V +QVN SGE SKSG  P     L + V Q  PNL   GLM I  P      ++    A+ R  +    LG+      LSMGMS D E AI  G+T VRIG+ +FGAR+Y
Sbjct:   56 ENYLQEALGKQAELADLPLNWHFIGPIQSNKTRPI---AEHFQWVHSVDRLKIAQRLSEQ-RPAGLPPLNVCLQVNVSGEASKSGCAPEDLPALAEAVKQ-LPNLRLRGLMAIPEPTAERAAQH-AAFARLRELLLDLNLGLDT----LSMGMSDDLEAAIGEGATWVRIGTALFGARDY 225          
BLAST of CK740128 vs. ExPASy Swiss-Prot
Match: Y395_HELPJ (UPF0001 protein jhp_0986 OS=Helicobacter pylori J99 GN=jhp_0986 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.003e-23
Identity = 73/176 (41.48%), Postives = 100/176 (56.82%), Query Frame = 3
Query:    3 ENYVQEIVEKAAQLPD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIG--MPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIF 521
            EN VQ++  K   L    LEWH IG+LQ NK+  LL+  P  A++ S+D+ K+A ++ +  E +G   L  L+QVN++ EESKSGV P   LE    +S+ C  L+  GLM IG    D T   ++F T  K   ++  A         LSMGMS DFELAI  G+  +RIGS +F
Sbjct:   55 ENKVQDLKIKMHSLEHLPLEWHMIGSLQENKINALLSLKP--ALLHSLDSLKLALKIEKRCEILGVN-LNALLQVNSAYEESKSGVVPEEALETYSQISETCKRLKLKGLMCIGAHTDDETKIEKSFTTTKKLFDQIKNA-------SVLSMGMSDDFELAIACGANLLRIGSFLF 220          
BLAST of CK740128 vs. ExPASy Swiss-Prot
Match: Y395_HELPY (UPF0001 protein HP_0395 OS=Helicobacter pylori GN=HP_0395 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.122e-23
Identity = 72/176 (40.91%), Postives = 101/176 (57.39%), Query Frame = 3
Query:    3 ENYVQEIVEKAAQLPD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIG--MPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIF 521
            EN VQ++  K   L    LEWH IG+LQ NK+  LL+  P  A++ S+D+ K+A ++ +  E +G   L  L+QVN++ EESKSGV P   LE+   +S+ C +L+  GLM IG    D     ++F T  K   ++  A         LSMGMS DFELAI  G+  +RIGS +F
Sbjct:   55 ENKVQDLKTKMHSLEHLPLEWHMIGSLQENKINALLSLKP--ALLHSLDSLKLALKIEKRCEILGVN-LNALLQVNSAYEESKSGVVPEEALEIYSQISETCKHLKLKGLMCIGAHTDDEKEIEKSFITTKKLFDQIKNA-------SVLSMGMSDDFELAIACGANLLRIGSFLF 220          
BLAST of CK740128 vs. ExPASy Swiss-Prot
Match: YGGS_ECOLI (UPF0001 protein yggS OS=Escherichia coli (strain K12) GN=yggS PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.811e-21
Identity = 75/188 (39.89%), Postives = 96/188 (51.06%), Query Frame = 3
Query:    3 ENYVQEIVEKAAQLPD----DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCD---LSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 545
            ENYVQE V+K     +     LEWHFIG LQSNK + +     +     ++D  +IA RLN         PL VL+Q+N S E SKSG++ +   EL   V++  P L   GLM I  P+     E  +     R       G+         LS+GMS D E AI  GST VRIG+ IFGAR+Y KK
Sbjct:   56 ENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQ-RPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAE-LPRLRLRGLMAIPAPE----SEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK 234          
BLAST of CK740128 vs. ExPASy Swiss-Prot
Match: YGGS_ECOL6 (UPF0001 protein yggS OS=Escherichia coli O6 GN=yggS PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.811e-21
Identity = 75/188 (39.89%), Postives = 96/188 (51.06%), Query Frame = 3
Query:    3 ENYVQEIVEKAAQLPD----DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCD---LSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 545
            ENYVQE V+K     +     LEWHFIG LQSNK + +     +     ++D  +IA RLN         PL VL+Q+N S E SKSG++ +   EL   V++  P L   GLM I  P+     E  +     R       G+         LS+GMS D E AI  GST VRIG+ IFGAR+Y KK
Sbjct:   56 ENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQ-RPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAE-LPRLRLRGLMAIPAPE----SEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK 234          
BLAST of CK740128 vs. ExPASy Swiss-Prot
Match: YGGS_ECO57 (UPF0001 protein yggS OS=Escherichia coli O157:H7 GN=yggS PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.811e-21
Identity = 75/188 (39.89%), Postives = 96/188 (51.06%), Query Frame = 3
Query:    3 ENYVQEIVEKAAQLPD----DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCD---LSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 545
            ENYVQE V+K     +     LEWHFIG LQSNK + +     +     ++D  +IA RLN         PL VL+Q+N S E SKSG++ +   EL   V++  P L   GLM I  P+     E  +     R       G+         LS+GMS D E AI  GST VRIG+ IFGAR+Y KK
Sbjct:   56 ENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQ-RPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAE-LPRLRLRGLMAIPAPE----SEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK 234          
BLAST of CK740128 vs. ExPASy Swiss-Prot
Match: YLME_BACSU (UPF0001 protein ylmE OS=Bacillus subtilis GN=ylmE PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.909e-18
Identity = 63/177 (35.59%), Postives = 98/177 (55.37%), Query Frame = 3
Query:    3 ENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIG--MPDYTSTPENFKTLAKCRSEVCKALGIPEEQC-DLSMGMSGDFELAIEMGSTNVRIGSTIFG 524
            EN   E++ K   +  + EWHFIG+LQS K K +   V +++ + S+D   +A  + +  E      ++  VQVNTS E SK G++    +  ++ +S    ++   GLMT+     D       F++L + R +V K L  P   C +LSMGMS DFE+AIE G+T +RIGS++ G
Sbjct:   55 ENRDAELLRKQELMKGNPEWHFIGSLQSRKAKSV---VNSVSYIHSLDRLSLAKEIEKRAEGT----VRCFVQVNTSLEPSKHGMKKEEVIPFIQELS-GFEHILVAGLMTMAPLTDDQDQIRSCFRSLRELRDQVQK-LNQPNAPCTELSMGMSNDFEIAIEEGATYIRIGSSLVG 222          
The following BLAST results are available for this feature:
BLAST of CK740128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
Y090_HAEIN1.392e-2845.65UPF0001 protein HI0090 OS=Haemophilus influenzae G... [more]
YPI1_VIBAL3.100e-2847.57UPF0001 protein in pilT-proC intergenic region OS=... [more]
Y274_AQUAE3.428e-2742.62UPF0001 protein aq_274 OS=Aquifex aeolicus GN=aq_2... [more]
Y394_PSEAE1.219e-2444.44UPF0001 protein PA0394 OS=Pseudomonas aeruginosa G... [more]
Y395_HELPJ3.003e-2341.48UPF0001 protein jhp_0986 OS=Helicobacter pylori J9... [more]
Y395_HELPY5.122e-2340.91UPF0001 protein HP_0395 OS=Helicobacter pylori GN=... [more]
YGGS_ECOLI2.811e-2139.89UPF0001 protein yggS OS=Escherichia coli (strain K... [more]
YGGS_ECOL62.811e-2139.89UPF0001 protein yggS OS=Escherichia coli O6 GN=ygg... [more]
YGGS_ECO572.811e-2139.89UPF0001 protein yggS OS=Escherichia coli O157:H7 G... [more]
YLME_BACSU2.909e-1835.59UPF0001 protein ylmE OS=Bacillus subtilis GN=ylmE ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6622 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740128 ID=CK740128; Name=CK740128; organism=Citrus sinensis; type=EST; length=669bp
GTGAAAACTACGTTCAAGAAATAGTGGAAAAGGCGGCTCAGCTTCCAGAT
GATCTAGAATGGCATTTCATTGGGAACCTGCAGAGCAATAAAGTGAAACC
TTTATTGGCTGGTGTGCCTAACCTGGCAATGGTAGAAAGTGTGGACAACG
AGAAGATTGCAGGTCGTCTTAATCGTATGGTTGAAACCATGGGAAGGAAG
CCTTTAAAAGTCTTGGTTCAAGTGAATACCAGTGGAGAAGAATCGAAATC
TGGAGTTGAGCCTTCAGGGTGTCTGGAACTTGTGAAACATGTTAGTCAAA
ACTGTCCGAATCTTGAGTTTTGTGGCCTAATGACAATTGGGATGCCAGAT
TACACATCGACCCCGGAGAACTTCAAGACATTAGCAAAATGCAGAAGTGA
GGTATGCAAGGCTCTTGGAATACCAGAAGAGCAATGTGATCTGTCTATGG
GAATGTCTGGTGACTTCGAGCTTGCTATTGAAATGGGGAGCACCAATGTC
AGGATTGGATCCACAATATTTGGTGCAAGGGAATATCCGAAGAAGAACTA
AACTTTTTTTTTCACCTGTTCTGAAAACGTTGGCTATTGGTATGTATTTA
TCTTAATGTACTGAAACTAGAGTATAGTAGATTAATCATATTTTTTATGC
ACTTGTTCAAAAAAAAAAA
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