CK740129

Overview
NameCK740129
Unique NameCK740129
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9730 contig Csv1_Contig9730:351..923. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: NIP51_ARATH (Probable aquaporin NIP5-1 OS=Arabidopsis thaliana GN=NIP5-1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 50/168 (29.76%), Postives = 77/168 (45.83%), Query Frame = 1
Query:   10 GGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGP 513
            G  + +++  T  ISG H+NP++T      R        AY+ AQ   +IC    +K    H + S   G  T+ S  + G A   E I TF+L++ V +     R+     V  LA + +G  V +  L   P TG  +NP R+ G AV   N ++    W++ V P
Sbjct:  118 GLAVMIIILSTGHISGAHLNPSLTIAFAALRHFPWAHVPAYIAAQVSASICASFALKGVF-HPFMS---GGVTIPS-VSLGQAFALEFIITFILLFVVTAVATDTRA-----VGELAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVASGNYRSL---WVYLVAP 272          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: NIP31_ARATH (Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 49/173 (28.32%), Postives = 83/173 (47.98%), Query Frame = 1
Query:    7 FGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKA--FMKHEYNSLGGG--ANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGP 513
            +G ++ V++Y    +SG H NPAV+     ++K    +   Y+ AQ LG+     +++    +  +  SL G     T  S  N  S +  E I TF L++ + +    KR+         A + IG  + +  L + PI+G  +NPARS G A+I+     + D W++ V P
Sbjct:   82 WGLVVTVMIYSIGHVSGAHFNPAVSIAFASSKKFPFNQVPGYIAAQLLGSTLAAAVLRLVFHLDDDVCSLKGDVYVGTYPSNSNTTSFV-MEFIATFNLMFVISAVATDKRATGS-----FAGIAIGATIVLDILFSGPISGASMNPARSLGPALIWG---CYKDLWLYIVSP 245          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: YFF4_YEAST (Uncharacterized membrane protein YFL054C OS=Saccharomyces cerevisiae GN=YFL054C PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11
Identity = 64/200 (32.00%), Postives = 84/200 (42.00%), Query Frame = 1
Query:    1 WAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGAN--TVASG----------YNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPV---LAPLPIGFAVFMVHLATIPITGTGINPARSFG----AAVIYNNDKA-----WDDHWIFWVGPFRWSI 528
            W FG M+ V  Y   GISGGHINPAVT  + + RK    +   Y+VAQ +GA  G  +   +         GG +  T A+G              +A   E IG  +LV  + +  D      DS+ P    +  L IGF V  + +A    T   INPAR  G    A++I     A     W   W  W GP    I
Sbjct:  388 WGFGCMLGV--YVAGGISGGHINPAVTISMAIFRKFPWKKVPVYIVAQIIGAYFGGAMAYGYFWSSITEFEGGPHIRTTATGACLFTDPKSYVTWRNAFFDEFIGASILVGCLMALLD------DSNAPPGNGMTALIIGFLVAAIGMALGYQTSFTINPARDLGPRIFASMIGYGPHAFHLTHWWWTWGAWGGPIAGGI 579          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: NIP41_ARATH (Putative aquaporin NIP4-1 OS=Arabidopsis thaliana GN=NIP4-1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11
Identity = 47/169 (27.81%), Postives = 79/169 (46.75%), Query Frame = 1
Query:    7 FGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGP 513
            +G ++ V++Y T  ISG H NPAVT    + R+    +   Y+ AQ  G++     ++   K    +  G         +   AL AEII +F+L++ +       R+     V  LA + +G  + +      PI+G  +NPARS G A++      +   W++ VGP
Sbjct:   82 WGLIVMVMIYSTGHISGAHFNPAVTVTFAIFRRFPWHQVPLYIGAQFAGSLLASLTLRLMFKVTPEAFFG----TTPADSPARALVAEIIISFLLMFVISGVATDNRA-----VGELAGIAVGMTIMVNVFVAGPISGASMNPARSLGPALVMG---VYKHIWVYIVGP 238          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: NIP13_ORYSJ (Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica GN=NIP1-3 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11
Identity = 49/173 (28.32%), Postives = 76/173 (43.93%), Query Frame = 1
Query:    7 FGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFM----KHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGP 513
            +G  + V+VY    ISG H+NPAVT       +    R  AY  AQ  G+      ++A      +H + +   G++          +L  E I TF L++ V       R+     +  LA L +G  V +  L   PI+G  +NPAR+ G A+I      +   W++  GP
Sbjct:   93 WGLAVMVMVYSVGHISGAHLNPAVTLAFATCGRFPWRRVPAYAAAQVAGSAAASAALRALFGGAPEHFFGTAPAGSDV--------QSLAMEFIITFYLMFVVSGVATDNRA-----IGELAGLAVGATVLVNVLFAGPISGASMNPARTIGPAIILGR---YTGIWVYIAGP 249          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: GLPF_PSEAE (Glycerol uptake facilitator protein OS=Pseudomonas aeruginosa GN=glpF PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11
Identity = 50/167 (29.94%), Postives = 78/167 (46.71%), Query Frame = 1
Query:    1 WAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV-----KAFMKHEY--NSLGGGANTVA----------SGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFG 450
            W  G  + + +Y +AG+SG H+NPAV+  L+L       +   Y+ AQ  GA C   LV       F++ E   N + G  +++A             + G A   E++ T +L+  + + TD            LAPL IG  + ++  A  P+TG  +NPAR FG
Sbjct:   51 WGVG--VSMAIYLSAGVSGAHLNPAVSIALWLFAGFEGRKLPFYITAQVAGAFCAAALVYTLYSSLFIEFEQAQNIVRGSQDSLALASVFSTYPHPALSVGQAFLVEVVITAILMAVIMALTDDGNGLPRGP---LAPLLIGLLIAVIGSAMGPLTGFAMNPARDFG 212          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: GLPF_STRR6 (Glycerol uptake facilitator protein OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=glpF PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11
Identity = 54/183 (29.51%), Postives = 85/183 (46.45%), Query Frame = 1
Query:    7 FGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSA-------LGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN-------NDKAWDDHWIFWVGP 513
            +G  + V V+ +  +S  H+NPAVT G+ L   +     + Y++AQ  GA+ G  LV    K  Y +     N +A+ ++ G A       L +EI+GTFVLV T+F+       A       +    +G  +  + L+    TG  +NPAR  G  ++++        D  W   WI  VGP
Sbjct:   45 WGIAVAVAVFVSGKLSPAHLNPAVTIGVALKGGLPWASVLPYILAQFAGAMLGQILVWLQFKPHYEAEENAGNILAT-FSTGPAIKDTVSNLISEILGTFVLVLTIFALGLYDFQAG------IGTFAVGTLIVGIGLSLGGTTGYALNPARDLGPRIMHSILPIPNKGDGDWSYAWIPVVGP 220          
The following BLAST results are available for this feature:
BLAST of CK740129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
NIP51_ARATH1.952e-1129.76Probable aquaporin NIP5-1 OS=Arabidopsis thaliana ... [more]
NIP31_ARATH1.952e-1128.32Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1... [more]
YFF4_YEAST2.549e-1132.00Uncharacterized membrane protein YFL054C OS=Saccha... [more]
NIP41_ARATH2.549e-1127.81Putative aquaporin NIP4-1 OS=Arabidopsis thaliana ... [more]
NIP13_ORYSJ2.549e-1128.32Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica G... [more]
GLPF_PSEAE2.549e-1129.94Glycerol uptake facilitator protein OS=Pseudomonas... [more]
GLPF_STRR64.348e-1129.51Glycerol uptake facilitator protein OS=Streptococc... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6623 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740129 ID=CK740129; Name=CK740129; organism=Citrus sinensis; type=EST; length=574bp
TGGGCCTTTGGTGGCATGATCTTCGTCCTTGTTTACTGCACCGCTGGCAT
TTCTGGTGGTCACATTAACCCTGCTGTGACGTTTGGGCTGTTCTTGGCAA
GGAAGGTATCATTGATCAGGGCTGTGGCTTACATGGTGGCTCAGTGCTTG
GGTGCCATTTGCGGTGTTGGTTTGGTCAAGGCCTTCATGAAGCATGAGTA
CAACTCACTTGGTGGTGGTGCTAACACTGTGGCTTCTGGCTACAACAAAG
GATCAGCCTTGGGTGCTGAGATTATTGGTACCTTCGTGCTTGTTTACACA
GTCTTCTCGGCCACAGACCCCAAGAGAAGCGCTCGTGACTCTCACGTGCC
CGTTTTGGCTCCACTTCCAATTGGATTTGCTGTGTTCATGGTTCACTTGG
CCACCATCCCCATCACTGGAACGGGCATCAACCCTGCTAGGAGCTTTGGT
GCTGCTGTTATCTACAACAATGACAAGGCCTGGGATGACCATTGGATCTT
CTGGGTTGGTCCCTTTCGTTGGAGCATTGGCTGCAGCGGCATACCACCAG
TACATCTTGAGGGCTGCTGCTATC
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