CK740129 | Citrus Genome Database

Overview


Name	CK740129
Unique Name	CK740129
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	574

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9730	contig	Csv1_Contig9730:351..923.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 4.099e-82
Identity = 142/171 (83.04%), Postives = 151/171 (88.30%), Query Frame = 1

Query:    1 WAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGP 513
            WAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAV YMV QCLGAICG G+VK FM   Y  LGGGAN V  GY KG  LGAEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYN++ AW+DHWIFWVGP
Sbjct:   93 WAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQCLGAICGAGVVKGFMVGPYQRLGGGANVVNPGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNDEHAWNDHWIFWVGP 263

HSP 2 Score: 27.335 bits (59), Expect = 4.099e-82
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  512 PFVGALAAAAYHQYILRA 565
            P +GA  AA YHQ I+RA
Sbjct:  263 PMIGAALAAIYHQIIIRA 280

[Close]

BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 9.095e-82
Identity = 137/172 (79.65%), Postives = 150/172 (87.21%), Query Frame = 1

Query:    1 WAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPF 516
            W+FGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ Y++ QCLGAICG G+VK F +  Y   GGGAN VA GY KG  LGAEI+GTF+LVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYN D AW DHWIFWVGPF
Sbjct:   98 WSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWSDHWIFWVGPF 269

HSP 2 Score: 29.6462 bits (65), Expect = 9.095e-82
Identity = 12/18 (66.67%), Postives = 14/18 (77.78%), Query Frame = 2

Query:  512 PFVGALAAAAYHQYILRA 565
            PF+GA  AA YHQ I+RA
Sbjct:  268 PFIGAALAAIYHQVIIRA 285

[Close]

BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 1.547e-81
Identity = 136/172 (79.07%), Postives = 151/172 (87.79%), Query Frame = 1

Query:    1 WAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPF 516
            W+FGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ Y++ QCLGA+CG G+VK F +  Y   GGGAN VA GY KG  LGAEI+GTF+LVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYN D AW+DHWIFWVGPF
Sbjct:   95 WSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAVCGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWNDHWIFWVGPF 266

HSP 2 Score: 29.6462 bits (65), Expect = 1.547e-81
Identity = 12/18 (66.67%), Postives = 14/18 (77.78%), Query Frame = 2

Query:  512 PFVGALAAAAYHQYILRA 565
            PF+GA  AA YHQ I+RA
Sbjct:  265 PFIGAALAAIYHQVIIRA 282

[Close]

BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 1.297e-80
Identity = 138/172 (80.23%), Postives = 149/172 (86.63%), Query Frame = 1

Query:    1 WAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPF 516
            W+FGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ YMV QCLGAICG G+VK F +  Y   GGGAN V  GY KG  LGAEI+GTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA++YN   AW+DHWIFWVGPF
Sbjct:   94 WSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQEGLYMGAGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRSHAWNDHWIFWVGPF 265

HSP 2 Score: 26.9498 bits (58), Expect = 1.297e-80
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  512 PFVGALAAAAYHQYILRA 565
            PF+GA  AA YH  I+RA
Sbjct:  264 PFIGAALAAIYHVVIIRA 281

[Close]

BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 291.197 bits (744), Expect = 1.417e-79
Identity = 137/172 (79.65%), Postives = 147/172 (85.47%), Query Frame = 1

Query:    1 WAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPF 516
            W+FGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAV YM  QCLGAICG G+VK F +  Y   GGGAN V  GY KG  LGAEI+GTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA++YN   AW DHWIFWVGPF
Sbjct:   94 WSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMAMQCLGAICGAGVVKGFQRGLYMGSGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRAHAWHDHWIFWVGPF 265

HSP 2 Score: 26.5646 bits (57), Expect = 1.417e-79
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  512 PFVGALAAAAYHQYILRA 565
            PF+GA  AA YH  ++RA
Sbjct:  264 PFIGAALAAIYHVVVIRA 281

[Close]

BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 1.848e-79
Identity = 135/172 (78.49%), Postives = 147/172 (85.47%), Query Frame = 1

Query:    1 WAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPF 516
            WAFGGMIF LVYCTAG+SGGHINPAVTFGL LARK+SL RAV Y+V QCLGA+CG G+VKAF    Y S GGGAN V+ GY KG  LGAE++GTFVLVYTVFSATD KR+ARDSHVP LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IY+N   W  HWIFWVGPF
Sbjct:  100 WAFGGMIFALVYCTAGVSGGHINPAVTFGLLLARKLSLTRAVYYVVMQCLGAVCGAGVVKAFGSALYESAGGGANAVSPGYTKGDGLGAEVVGTFVLVYTVFSATDAKRTARDSHVPALAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYDNPHGWHGHWIFWVGPF 271

HSP 2 Score: 29.261 bits (64), Expect = 1.848e-79
Identity = 12/18 (66.67%), Postives = 13/18 (72.22%), Query Frame = 2

Query:  512 PFVGALAAAAYHQYILRA 565
            PF GA  AA YHQ +LRA
Sbjct:  270 PFAGAALAAVYHQVVLRA 287

[Close]

BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 286.189 bits (731), Expect = 6.976e-79
Identity = 136/173 (78.61%), Postives = 148/173 (85.55%), Query Frame = 1

Query:    1 WAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFM-KHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPF 516
            WAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ YMV Q LGAICG G+VK F  K  +  L GGAN VA GY KG  LGAEI+GTF+LVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+++N    W+DHWIFWVGPF
Sbjct:   95 WAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQVLGAICGAGVVKGFEGKQRFGDLNGGANFVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVFNKKIGWNDHWIFWVGPF 267

HSP 2 Score: 29.261 bits (64), Expect = 6.976e-79
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 2

Query:  512 PFVGALAAAAYHQYILRA 565
            PF+GA  AA YHQ ++RA
Sbjct:  266 PFIGAALAALYHQVVIRA 283

[Close]

BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 282.337 bits (721), Expect = 2.876e-77
Identity = 130/171 (76.02%), Postives = 146/171 (85.38%), Query Frame = 1

Query:    1 WAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGP 513
            W+FG  IFVLVYCT G+SGGHINPAVT GLF  RK+SL+R V Y+VAQCLGAI G G+VK  MK  Y++LGGGANTV+ GY+   ALGAEI+GTF+LVYTVFSATDPKR+ARDS +PVL PLPIGFAVF+VHLATIPITGTGINPARS GAAV+YN   AW DHWIFWVGP
Sbjct:   87 WSFGATIFVLVYCTGGVSGGHINPAVTLGLFFGRKLSLVRTVLYVVAQCLGAIAGAGIVKGIMKRPYDALGGGANTVSDGYSAAGALGAEIVGTFILVYTVFSATDPKRTARDSFIPVLVPLPIGFAVFVVHLATIPITGTGINPARSLGAAVLYNQHAAWKDHWIFWVGP 257

HSP 2 Score: 27.7202 bits (60), Expect = 2.876e-77
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 2

Query:  512 PFVGALAAAAYHQYILRAAA 571
            P +GA  AAAYH+ +LR  A
Sbjct:  257 PVIGAFLAAAYHKLVLRGEA 276

[Close]

BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 9.927e-75
Identity = 132/172 (76.74%), Postives = 143/172 (83.14%), Query Frame = 1

Query:    1 WAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPF 516
            W+FGGMI  LVYCTAGISG HINPAVTFGLFLARK+SL RAV Y++ QCLGAICG G+VK F +  Y   GG  N VA GY KG  LGAEI+GTF+LVYTVFSATD KR ARDSHVP+LAPLPIGFAVF+VHLAT+ ITGTGINPARS GAAVIYN   AW DHWIFWVGPF
Sbjct:   94 WSFGGMILALVYCTAGISG-HINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGRGVVKGFQQGLYMGNGGRRNVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRRARDSHVPILAPLPIGFAVFLVHLATMGITGTGINPARSLGAAVIYNQHHAWADHWIFWVGPF 264

HSP 2 Score: 29.6462 bits (65), Expect = 9.927e-75
Identity = 12/18 (66.67%), Postives = 14/18 (77.78%), Query Frame = 2

Query:  512 PFVGALAAAAYHQYILRA 565
            PF+GA  AA YHQ I+RA
Sbjct:  263 PFIGAALAAIYHQVIIRA 280

[Close]

BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 9.864e-69
Identity = 122/175 (69.71%), Postives = 141/175 (80.57%), Query Frame = 1

Query:    1 WAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH-EYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI--YNNDKAWDDHWIFWVGPF 516
            WAFGG+IFVLVYCTAGISGGH+NPAVTF + LAR+VSL RA  Y +AQC+GA+CG GL +A     +Y   GGGAN +A+GY+ G+ + AE++GTFVLVYTVFSATDPKR ARDSHVPVLAPLPIG AV +VHLATIPITGTGINPARS G A++      KAW   WIFWVGPF
Sbjct:   74 WAFGGLIFVLVYCTAGISGGHMNPAVTFAMVLARRVSLPRAALYTMAQCVGAVCGAGLARAMHGGGQYARHGGGANELAAGYSAGAGVVAEMVGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGLAVLVVHLATIPITGTGINPARSLGPALVLGLGTTKAWSHLWIFWVGPF 248

HSP 2 Score: 31.9574 bits (71), Expect = 9.864e-69
Identity = 14/20 (70.00%), Postives = 14/20 (70.00%), Query Frame = 2

Query:  512 PFVGALAAAAYHQYILRAAA 571
            PF GA AA  YH YILR AA
Sbjct:  247 PFAGAAAAMIYHHYILRGAA 266

The following BLAST results are available for this feature:

BLAST of CK740129 vs. ExPASy Swiss-Prot

BLAST of CK740129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187


Match Name	E-value	Identity	Description
PIP1_SOLLC	4.099e-82	83.04	Probable aquaporin PIP-type pTOM75 OS=Solanum lyco...	[more]
PIP13_MAIZE	9.095e-82	79.65	Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2...	[more]
PIP12_MAIZE	1.547e-81	79.07	Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1	[more]
PIP15_MAIZE	1.297e-80	80.23	Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1	[more]
PIP13_ORYSJ	1.417e-79	79.65	Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ...	[more]
PIP16_MAIZE	1.848e-79	78.49	Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1	[more]
PIP2_PEA	6.976e-79	78.61	Probable aquaporin PIP-type 7a OS=Pisum sativum GN...	[more]
PIP27_ORYSJ	2.876e-77	76.02	Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j...	[more]
PIP11_MAIZE	9.927e-75	76.74	Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1	[more]
PIP28_ORYSJ	9.864e-69	69.71	Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_6623 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65G08 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK740129 ID=CK740129; Name=CK740129; organism=Citrus sinensis; type=EST; length=574bp
TGGGCCTTTGGTGGCATGATCTTCGTCCTTGTTTACTGCACCGCTGGCAT
TTCTGGTGGTCACATTAACCCTGCTGTGACGTTTGGGCTGTTCTTGGCAA
GGAAGGTATCATTGATCAGGGCTGTGGCTTACATGGTGGCTCAGTGCTTG
GGTGCCATTTGCGGTGTTGGTTTGGTCAAGGCCTTCATGAAGCATGAGTA
CAACTCACTTGGTGGTGGTGCTAACACTGTGGCTTCTGGCTACAACAAAG
GATCAGCCTTGGGTGCTGAGATTATTGGTACCTTCGTGCTTGTTTACACA
GTCTTCTCGGCCACAGACCCCAAGAGAAGCGCTCGTGACTCTCACGTGCC
CGTTTTGGCTCCACTTCCAATTGGATTTGCTGTGTTCATGGTTCACTTGG
CCACCATCCCCATCACTGGAACGGGCATCAACCCTGCTAGGAGCTTTGGT
GCTGCTGTTATCTACAACAATGACAAGGCCTGGGATGACCATTGGATCTT
CTGGGTTGGTCCCTTTCGTTGGAGCATTGGCTGCAGCGGCATACCACCAG
TACATCTTGAGGGCTGCTGCTATC