CK740129

Overview
NameCK740129
Unique NameCK740129
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9730 contig Csv1_Contig9730:351..923. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: AQP1_PIG (Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 9.618e-35
Identity = 85/172 (49.42%), Postives = 108/172 (62.79%), Query Frame = 1
Query:    4 AFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH-EYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPF 516
            AFG  I  L      ISG H+NPAVT GL L+ ++S++RAV Y++AQC+GAI    ++         NSL  G N++A G + G  LG EIIGT  LV  V + TD +R  RD  +   APL IGF+V + HL  I  TG GINPARSFG+AVI +N   + DHW+FWVGPF
Sbjct:   57 AFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAVMYIIAQCVGAIVATAILSGITSSLPGNSL--GLNSLAPGVDSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIGFSVALGHLLAIDYTGCGINPARSFGSAVITHN---FQDHWVFWVGPF 219          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 2.143e-34
Identity = 84/172 (48.84%), Postives = 106/172 (61.63%), Query Frame = 1
Query:    4 AFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH-EYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPF 516
            AFG  I  L      ISG H+NPAVT GL L+ ++S++RA+ Y++AQC+GAI    ++         NSL  G N +A G N G  LG EIIGT  LV  V + TD +R  RD  +    PL IGF+V + HL  I  TG GINPARSFG++VI +N   + DHWIFWVGPF
Sbjct:   57 AFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSL--GLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHN---FQDHWIFWVGPF 219          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 2.798e-34
Identity = 84/172 (48.84%), Postives = 106/172 (61.63%), Query Frame = 1
Query:    4 AFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH-EYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPF 516
            AFG  I  L      ISG H+NPAVT GL L+ ++S++RA+ Y++AQC+GAI    ++         NSL  G N +A G N G  LG EIIGT  LV  V + TD +R  RD  +    PL IGF+V + HL  I  TG GINPARSFG++VI +N   + DHWIFWVGPF
Sbjct:   57 AFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAIMYIIAQCVGAIVATVILSGITSSLPDNSL--GLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTD-RRRRRD--LGDSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHN---FQDHWIFWVGPF 220          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: AQP1_CANFA (Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 6.234e-34
Identity = 85/172 (49.42%), Postives = 105/172 (61.05%), Query Frame = 1
Query:    4 AFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH-EYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPF 516
            AFG  I  L      ISG H+NPAVT GL L+ ++S++RAV Y++AQC+GAI    ++         NSL  G N +A G N G  LG EIIGT  LV  V + TD +R  RD  +    PL IG +V + HL  I  TG GINPARSFG++VI +N K   DHWIFWVGPF
Sbjct:   57 AFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLPDNSL--GRNELAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSGPLAIGLSVALGHLLAIDYTGCGINPARSFGSSVITHNFK---DHWIFWVGPF 219          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.063e-33
Identity = 84/172 (48.84%), Postives = 105/172 (61.05%), Query Frame = 1
Query:    4 AFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEY-NSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPF 516
            AFG  I  L      ISG H+NPAVT GL L+ ++S++RAV Y++AQC+GAI    ++         NSL  G N +A G N G  LG EIIGT  LV  V + TD +R  RD  +   APL IG +V + HL  I  TG GINPARSFG+AV+  N   + +HWIFWVGPF
Sbjct:   55 AFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLVDNSL--GRNDLAHGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVLTRN---FSNHWIFWVGPF 217          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 1.389e-33
Identity = 84/172 (48.84%), Postives = 105/172 (61.05%), Query Frame = 1
Query:    4 AFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH-EYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPF 516
            AFG  I  L      ISG H+NPAVT GL L+ ++S+ RA+ Y++AQC+GAI    ++         NSL  G N +A G N G  LG EIIGT  LV  V + TD +R  RD  +   APL IG +V + HL  I  TG GINPARSFG+AVI +N   + +HWIFWVGPF
Sbjct:   55 AFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLPGNSL--GRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHN---FSNHWIFWVGPF 217          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 1.389e-33
Identity = 84/172 (48.84%), Postives = 105/172 (61.05%), Query Frame = 1
Query:    4 AFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH-EYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPF 516
            AFG  I  L      ISG H+NPAVT GL L+ ++S+ RA+ Y++AQC+GAI    ++         NSL  G N +A G N G  LG EIIGT  LV  V + TD +R  RD  +   APL IG +V + HL  I  TG GINPARSFG+AVI +N   + +HWIFWVGPF
Sbjct:   55 AFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSL--GRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHN---FSNHWIFWVGPF 217          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 142.124 bits (357), Expect = 1.814e-33
Identity = 84/172 (48.84%), Postives = 105/172 (61.05%), Query Frame = 1
Query:    4 AFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEY-NSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPF 516
            AFG  I  L      ISG H+NPAVT GL L+ ++S++RAV Y++AQC+GAI    ++         NSL  G N +A G N G  LG EIIGT  LV  V + TD +R  RD  +   APL IG +V + HL  I  TG GINPARSFG+AV+  N   + +HWIFWVGPF
Sbjct:   55 AFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVASAILSGITSSLLENSL--GRNDLARGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVLTRN---FSNHWIFWVGPF 217          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 9.002e-33
Identity = 79/170 (46.47%), Postives = 103/170 (60.59%), Query Frame = 1
Query:    7 FGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGP 513
            FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++  ++    N +GG G  TV      G  L  E+I TF LV+T+F++ D KR    + V     L IGF+V + HL  I  TG  +NPARSFG AVI  N   W++HWI+WVGP
Sbjct:   80 FGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPNVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKR----TDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGP 240          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.536e-32
Identity = 79/180 (43.89%), Postives = 107/180 (59.44%), Query Frame = 1
Query:    7 FGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFRWSIGCSGI 543
            FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++  ++    + +GG G  TV      G  L  E+I TF LV+T+F++ D KR    + V     L IGF+V + HL  I  TG  +NPARSFG AVI  N   W++HWI+WVGP   ++   G+
Sbjct:   77 FGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKR----TDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGL 247          
The following BLAST results are available for this feature:
BLAST of CK740129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
AQP1_PIG9.618e-3549.42Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3[more]
AQP1_BOVIN2.143e-3448.84Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3[more]
AQP1_SHEEP2.798e-3448.84Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3[more]
AQP1_CANFA6.234e-3449.42Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3[more]
AQP1_MOUSE1.063e-3348.84Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3[more]
AQP1_PONAB1.389e-3348.84Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3[more]
AQP1_HUMAN1.389e-3348.84Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3[more]
AQP1_RAT1.814e-3348.84Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4[more]
AQP4_NOTAL9.002e-3346.47Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
AQP4_DIPME1.536e-3243.89Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6623 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740129 ID=CK740129; Name=CK740129; organism=Citrus sinensis; type=EST; length=574bp
TGGGCCTTTGGTGGCATGATCTTCGTCCTTGTTTACTGCACCGCTGGCAT
TTCTGGTGGTCACATTAACCCTGCTGTGACGTTTGGGCTGTTCTTGGCAA
GGAAGGTATCATTGATCAGGGCTGTGGCTTACATGGTGGCTCAGTGCTTG
GGTGCCATTTGCGGTGTTGGTTTGGTCAAGGCCTTCATGAAGCATGAGTA
CAACTCACTTGGTGGTGGTGCTAACACTGTGGCTTCTGGCTACAACAAAG
GATCAGCCTTGGGTGCTGAGATTATTGGTACCTTCGTGCTTGTTTACACA
GTCTTCTCGGCCACAGACCCCAAGAGAAGCGCTCGTGACTCTCACGTGCC
CGTTTTGGCTCCACTTCCAATTGGATTTGCTGTGTTCATGGTTCACTTGG
CCACCATCCCCATCACTGGAACGGGCATCAACCCTGCTAGGAGCTTTGGT
GCTGCTGTTATCTACAACAATGACAAGGCCTGGGATGACCATTGGATCTT
CTGGGTTGGTCCCTTTCGTTGGAGCATTGGCTGCAGCGGCATACCACCAG
TACATCTTGAGGGCTGCTGCTATC
back to top