CK740311

Overview
NameCK740311
Unique NameCK740311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length550
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12466 contig Csv1_Contig12466:632..1180. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740311 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 4.424e-88
Identity = 135/151 (89.40%), Postives = 141/151 (93.38%), Query Frame = 1
Query:   94 REAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWI 546
            REAAD+I+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPII TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D + D+DIV LVD FPGQSIDFFGALRARVYDDEVR ++
Sbjct:  211 REAADLIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFV 361          

HSP 2 Score: 63.1586 bits (152), Expect = 4.424e-88
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 3
Query:    3 KMGINPIMMSAGELESGNAGEPAKLIRQRY 92
            KMGINPIMMSAGELESGNAGEPAKLIRQRY
Sbjct:  181 KMGINPIMMSAGELESGNAGEPAKLIRQRY 210          
BLAST of CK740311 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 269.24 bits (687), Expect = 1.076e-83
Identity = 128/152 (84.21%), Postives = 137/152 (90.13%), Query Frame = 1
Query:   94 REAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWIS 549
            REAAD+I KGKMC L INDL+ GAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK++N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIF+ D V  + +VKLVD FPGQSIDFFGALRARVY DEVR W++
Sbjct:  209 REAADLIAKGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVN 360          

HSP 2 Score: 62.003 bits (149), Expect = 1.076e-83
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 3
Query:    3 KMGINPIMMSAGELESGNAGEPAKLIRQRY 92
            K+GINPIMMSAGELESGNAGEPAKLIRQRY
Sbjct:  179 KLGINPIMMSAGELESGNAGEPAKLIRQRY 208          
BLAST of CK740311 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.287e-78
Identity = 124/152 (81.58%), Postives = 134/152 (88.16%), Query Frame = 1
Query:   94 REAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWIS 549
            REA+DII+KG+MC L INDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPT VQLPG+Y  EE PRVPI+ TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV   ++  LVDTFPGQSIDFFGALRARVYDD VR WI+
Sbjct:  184 REASDIIKKGRMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWIT 335          

HSP 2 Score: 55.0694 bits (131), Expect = 1.287e-78
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 3
Query:    3 KMGINPIMMSAGELESGNAGEPAKLIRQRY 92
            K+GI PI+MSAGELESGNAGEPAKLIR RY
Sbjct:  154 KLGIAPIVMSAGELESGNAGEPAKLIRTRY 183          
BLAST of CK740311 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 2.449e-77
Identity = 134/151 (88.74%), Postives = 144/151 (95.36%), Query Frame = 1
Query:   94 REAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWI 546
            REAAD+I+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNK ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVR W+
Sbjct:  201 REAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWV 351          
BLAST of CK740311 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 285.419 bits (729), Expect = 1.216e-76
Identity = 135/152 (88.82%), Postives = 144/152 (94.74%), Query Frame = 1
Query:   94 REAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWIS 549
            REA+D+I+KGKM CL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V ++ +V+LVDTFPGQSIDFFGALRARVYDDEVR W+S
Sbjct:  207 REASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVS 358          
BLAST of CK740311 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 1.138e-74
Identity = 134/152 (88.16%), Postives = 141/152 (92.76%), Query Frame = 1
Query:   94 REAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWIS 549
            REA+D+I+KGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V + DIV+LVD  PGQSIDFFGALRARVYDDEVR WIS
Sbjct:  215 REASDLIKKGKMCVLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWIS 366          
BLAST of CK740311 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.323e-61
Identity = 103/152 (67.76%), Postives = 125/152 (82.24%), Query Frame = 1
Query:   94 REAADIIR-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWI 546
            RE A++I+ +GKMC LMINDLDAGAGR    TQYTVN Q+VNATLMNIADNPT VQLPG Y+     RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R++++G+  GIF  D ++  D+ KLVD+FP QSIDFF ALR+R+YD+++R++I
Sbjct:   83 RETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFI 234          

HSP 2 Score: 40.817 bits (94), Expect = 3.323e-61
Identity = 18/30 (60.00%), Postives = 24/30 (80.00%), Query Frame = 3
Query:    3 KMGINPIMMSAGELESGNAGEPAKLIRQRY 92
            KMG+   ++S GELES +AG+PA+LIR RY
Sbjct:   53 KMGVEVTLISGGELESPDAGDPARLIRLRY 82          
BLAST of CK740311 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.649e-61
Identity = 104/152 (68.42%), Postives = 124/152 (81.58%), Query Frame = 1
Query:   94 REAADIIR-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWI 546
            RE A++I+ +GKMC LMINDLDAGAGR    TQYTVN Q+VNATLMNIADNPT VQLPG Y+     RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+D++G+  GIF  D ++  +I +LVDTFP QSIDFF ALR+R+YD ++R++I
Sbjct:   83 RETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFI 234          

HSP 2 Score: 41.2022 bits (95), Expect = 5.649e-61
Identity = 19/30 (63.33%), Postives = 24/30 (80.00%), Query Frame = 3
Query:    3 KMGINPIMMSAGELESGNAGEPAKLIRQRY 92
            KMGI   ++S GELES +AG+PA+LIR RY
Sbjct:   53 KMGIEVTLISGGELESPDAGDPARLIRLRY 82          
BLAST of CK740311 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.181e-17
Identity = 66/156 (42.31%), Postives = 69/156 (44.23%), Query Frame = 1
Query:   43 WKVAMLENPLS*SGRGTREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALR 510
            W   M  NP+  S  G  E+ +     KMCCL INDLDAGAGR                                         VPIIVTGNDFSTLYAPLI                RIGVC GIFR           LVDTFPGQSIDFFGALR
Sbjct:   54 WGGKMGINPIMMSA-GELESGNAGEPAKMCCLFINDLDAGAGR-----------------------------------------VPIIVTGNDFSTLYAPLI----------------RIGVCTGIFR-----------LVDTFPGQSIDFFGALR 140          
The following BLAST results are available for this feature:
BLAST of CK740311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA_ARATH4.424e-8889.40Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL1.076e-8384.21Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE1.287e-7881.58Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU2.449e-7788.74Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE1.216e-7688.82Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU1.138e-7488.16Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC3.323e-6167.76Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP5.649e-6168.42Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY2.181e-1742.31Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6455 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740311 ID=CK740311; Name=CK740311; organism=Citrus sinensis; type=EST; length=550bp
CCAAGATGGGCATCAACCCAATTATGATGAGTGCCGGAGAATTGGAAAGT
GGCAATGCTGGAGAACCCGCTAAGTTGATCAGGCAGAGGTACCCGTGAGG
CAGCTGACATTATCAGGAAGGGAAAAATGTGCTGCCTCATGATCAATGAT
CTTGATGCAGGAGCTGGTCGTATGGGTGGCACCACCCAGTACACAGTTAA
CAACCAAATGGTTAACGCCACACTCATGAACATTGCTGATAACCCAACTT
GTGTCCAACTCCCTGGTATGTACAACAAGGAGGAGAACCCCCGTGTCCCA
ATCATAGTCACCGGTAATGACTTCTCAACATTGTATGCTCCTCTCATCCG
TGATGGTCGTATGGAGAAATTCTACTGGGCACCTACAAGGGAGGACCGTA
TTGGTGTGTGCAAGGGTATCTTCAGGAATGACAATGTGGCTGATGACGAC
ATTGTCAAGCTTGTTGACACCTTCCCCGGCCAATCCATTGATTTCTTTGG
AGCCCTGAGGGCCAGAGTCTATGATGATGAGGTGAGGAATTGGATCTCTG
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