CK740324

Overview
NameCK740324
Unique NameCK740324
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1465 contig Csv1_Contig1465:371..954. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740324 vs. ExPASy Swiss-Prot
Match: RS4_YARLI (40S ribosomal protein S4 OS=Yarrowia lipolytica GN=RPS4 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 8.107e-61
Identity = 109/164 (66.46%), Postives = 133/164 (81.10%), Query Frame = 3
Query:    3 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEE 494
            DV+ + KT ENFRL+YD KGRF +H I DEEA +KL KV+ VQ G+KGIPY+ T+DGRTIRYPDPLIK NDT+K+DL T KIT F+KF+ GN+VM TGGRN GRVG I +RE+H+G F+ +HI+DAL ++F TRL NVF IG+G K  +SLPKGKGIKLSI EE
Sbjct:   88 DVIQLEKTGENFRLVYDVKGRFAVHRITDEEAAYKLGKVKRVQVGKKGIPYLVTHDGRTIRYPDPLIKVNDTVKIDLATGKITSFVKFENGNIVMTTGGRNMGRVGTITHRERHEGGFDIVHIKDALDNQFVTRLTNVFVIGEGNKSLISLPKGKGIKLSIAEE 251          
BLAST of CK740324 vs. ExPASy Swiss-Prot
Match: RS4_BOMMO (40S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 8.107e-61
Identity = 109/164 (66.46%), Postives = 134/164 (81.71%), Query Frame = 3
Query:    3 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEE 494
            DVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ V  G K +PY+ T+DGRTIRYPDPLIK ND+I+LD+ T KI +FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+D+ GH FATRL NVF IGKGTK ++SLP+GKGI+L+I EE
Sbjct:   88 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEE 251          
BLAST of CK740324 vs. ExPASy Swiss-Prot
Match: RS4Y1_HUMAN (40S ribosomal protein S4, Y isoform 1 OS=Homo sapiens GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 8.107e-61
Identity = 105/164 (64.02%), Postives = 132/164 (80.49%), Query Frame = 3
Query:    3 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEE 494
            DV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL T KI  FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATRL N+F IG G KPW+SLP+GKGI+L++ EE
Sbjct:   88 DVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAEE 251          
BLAST of CK740324 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 1.059e-60
Identity = 105/164 (64.02%), Postives = 135/164 (82.32%), Query Frame = 3
Query:    3 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEE 494
            DV+++ KT E FRL+YD KGRF +H I  EEAK+KLCKV+  Q G KG+P++ T+DGRTIRYPDPLI AND++++D+ + KIT++IKFD GN+ M+TGGRN GRVG + NRE+H GSF+ +HI+D+ GH FATRL NVF IGKG KP++SLPKGKG+KLSI EE
Sbjct:   88 DVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEE 251          
BLAST of CK740324 vs. ExPASy Swiss-Prot
Match: RS4Y1_PONPY (40S ribosomal protein S4, Y isoform 1 OS=Pongo pygmaeus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 1.059e-60
Identity = 106/164 (64.63%), Postives = 131/164 (79.88%), Query Frame = 3
Query:    3 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEE 494
            DV+SI KT E+FRL+YDTKGRF +  I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDT+++DL T KI  FIKFD GNV MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR+ N+F IG G KPW+SLP+GKGI+L+I EE
Sbjct:   88 DVISIDKTGEHFRLVYDTKGRFAVQRITVEEAKYKLCKVRKITVGMKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKIINFIKFDTGNVCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEE 251          
BLAST of CK740324 vs. ExPASy Swiss-Prot
Match: RS4Y1_GORGO (40S ribosomal protein S4, Y isoform 1 OS=Gorilla gorilla gorilla GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 232.261 bits (591), Expect = 1.383e-60
Identity = 104/164 (63.41%), Postives = 132/164 (80.49%), Query Frame = 3
Query:    3 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEE 494
            DV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL T KI  FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR+ N+F IG G KPW+SLP+GKGI+L++ EE
Sbjct:   88 DVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTVAEE 251          
BLAST of CK740324 vs. ExPASy Swiss-Prot
Match: RS4_SPOFR (40S ribosomal protein S4 OS=Spodoptera frugiperda GN=RpS4 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 3.081e-60
Identity = 106/164 (64.63%), Postives = 135/164 (82.32%), Query Frame = 3
Query:    3 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEE 494
            DVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ V  G K +P++ T+DGRTIRYPDPLIK ND+++LD+ T+KI +FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+D+ GH FATRL NVF IGKGTK ++SLP+GKG++L+I EE
Sbjct:   88 DVVSIEKTNELFRLIYDVKGRFTVHRITPEEAKYKLCKVKRVSTGPKNVPFLVTHDGRTIRYPDPLIKVNDSVQLDIATSKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGVRLTIAEE 251          
BLAST of CK740324 vs. ExPASy Swiss-Prot
Match: RS4_LYSTE (40S ribosomal protein S4 OS=Lysiphlebus testaceipes GN=RpS4 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 3.081e-60
Identity = 107/164 (65.24%), Postives = 135/164 (82.32%), Query Frame = 3
Query:    3 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEE 494
            DVV+I KT E FRL+YD KGRF +H I +EEAK+KLCKVR VQ G KG+P++ T+DGRT+RYPDP+IK NDTI+L++ TNKI + IKFD GN+ M+TGGRN GRVG + +RE+H GSF+  HI+D+ GH FATR+ NVF IGKG+K +VSLP+GKG+KLSI EE
Sbjct:   88 DVVTIEKTGEFFRLIYDVKGRFSIHRISNEEAKYKLCKVRRVQTGPKGVPFLVTHDGRTLRYPDPVIKVNDTIQLEIATNKILDSIKFDSGNLCMITGGRNLGRVGTVVSRERHPGSFDICHIKDSQGHTFATRMNNVFIIGKGSKAYVSLPRGKGVKLSIAEE 251          
BLAST of CK740324 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANTR (40S ribosomal protein S4, Y isoform 1 OS=Pan troglodytes GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 4.023e-60
Identity = 104/164 (63.41%), Postives = 131/164 (79.88%), Query Frame = 3
Query:    3 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEE 494
            DV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL T KI  FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATRL N+F IG G KPW+SLP+GKGI+L++  E
Sbjct:   88 DVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAAE 251          
BLAST of CK740324 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANPA (40S ribosomal protein S4, Y isoform 1 OS=Pan paniscus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 4.023e-60
Identity = 104/164 (63.41%), Postives = 131/164 (79.88%), Query Frame = 3
Query:    3 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEE 494
            DV+SI KT E+FRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL T KI  FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATRL N+F IG G KPW+SLP+GKGI+L++  E
Sbjct:   88 DVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAAE 251          
The following BLAST results are available for this feature:
BLAST of CK740324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
RS4_YARLI8.107e-6166.4640S ribosomal protein S4 OS=Yarrowia lipolytica GN... [more]
RS4_BOMMO8.107e-6166.4640S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE... [more]
RS4Y1_HUMAN8.107e-6164.0240S ribosomal protein S4, Y isoform 1 OS=Homo sapi... [more]
RS4_DROME1.059e-6064.0240S ribosomal protein S4 OS=Drosophila melanogaste... [more]
RS4Y1_PONPY1.059e-6064.6340S ribosomal protein S4, Y isoform 1 OS=Pongo pyg... [more]
RS4Y1_GORGO1.383e-6063.4140S ribosomal protein S4, Y isoform 1 OS=Gorilla g... [more]
RS4_SPOFR3.081e-6064.6340S ribosomal protein S4 OS=Spodoptera frugiperda ... [more]
RS4_LYSTE3.081e-6065.2440S ribosomal protein S4 OS=Lysiphlebus testaceipe... [more]
RS4Y1_PANTR4.023e-6063.4140S ribosomal protein S4, Y isoform 1 OS=Pan trogl... [more]
RS4Y1_PANPA4.023e-6063.4140S ribosomal protein S4, Y isoform 1 OS=Pan panis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6468 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740324 ID=CK740324; Name=CK740324; organism=Citrus sinensis; type=EST; length=584bp
TGGATGTTGTGTCAATTCCAAAGACCAATGAGAACTTCCGTCTCCTTTAC
GACACCAAGGGCCGGTTCCGCCTTCATTCAATCAGGGATGAGGAGGCTAA
GTTCAAGCTCTGCAAGGTTCGATCAGTGCAATTTGGGCAGAAGGGAATCC
CTTACATCAACACTTATGATGGGAGGACTATTCGCTACCCAGACCCACTC
ATCAAGGCCAATGATACCATCAAGCTGGACCTGGAGACTAACAAGATCAC
CGAGTTCATCAAGTTTGATGTTGGAAATGTTGTGATGGTGACTGGAGGGA
GAAACAGAGGACGTGTTGGAATCATTAAGAACAGAGAAAAGCATAAGGGT
AGCTTTGAAACTATCCACATCCAGGATGCTCTTGGTCATGAGTTTGCAAC
TCGTCTTGGAAATGTGTTCACCATTGGCAAGGGTACAAAGCCATGGGTTT
CTCTTCCCAAGGGCAAGGGTATTAAACTATCCATCATTGAGGAGGCAAGG
AAGAGACAAGCCCTGGCGACTTCAGCAGCCGCCCAATGATGATAAACTTC
ATGGTCTTTGCGATATGGTTTTAGAAAGTTTACT
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