CK740325

Overview
NameCK740325
Unique NameCK740325
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length396
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740325_ssr193 microsatellite CK740325_ssr193:193..204. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12624 contig Csv1_Contig12624:52..446. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740325 vs. ExPASy Swiss-Prot
Match: EIF3G_SCHPO (Eukaryotic translation initiation factor 3 subunit G OS=Schizosaccharomyces pombe GN=tif35 PE=1 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 3.663e-15
Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 3
Query:  198 AAGAT--KGTYVPPGMRAGAER-TGTHM--RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVD 395
            A+GA   KG Y+ P +RAG+ R +G  M  R R+D  ++RVTNLS+DTRE +L +LFR FG + RVY+A D
Sbjct:  166 ASGALGEKGRYIAPHLRAGSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKD 236          

HSP 2 Score: 35.4242 bits (80), Expect = 3.663e-15
Identity = 15/49 (30.61%), Postives = 29/49 (59.18%), Query Frame = 2
Query:    8 RTRETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAE 154
            +  E   A  + A++   G+ ++ CR C  KG+H+T++CP+K +  P +
Sbjct:  107 KEEEQDEAALAAAKVKAKGSSVVRCRAC--KGNHFTAQCPYKSIIGPVD 153          
BLAST of CK740325 vs. ExPASy Swiss-Prot
Match: EIF3G_USTMA (Eukaryotic translation initiation factor 3 subunit G OS=Ustilago maydis GN=TIF35 PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 8.017e-15
Identity = 37/73 (50.68%), Postives = 43/73 (58.90%), Query Frame = 3
Query:  192 PAAAGATKGTYVPPGMRAGAERTGTHM-----RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVD 395
            PA A +  G YVPP MR GA+  G  M       R+D  ++RVTNLSED  + DL ELF  FG V RVYV  D
Sbjct:  187 PAVAASAGGKYVPPSMRGGAKGPGEKMGGLGGMSRDDLPTLRVTNLSEDADDDDLRELFMRFGRVVRVYVGRD 259          

HSP 2 Score: 34.6538 bits (78), Expect = 8.017e-15
Identity = 13/21 (61.90%), Postives = 18/21 (85.71%), Query Frame = 2
Query:   74 MVCRTCGKKGDHWTSRCPFKD 136
            +VCR C  KGDH+T++CP+KD
Sbjct:  138 IVCRLC--KGDHFTTKCPYKD 156          
BLAST of CK740325 vs. ExPASy Swiss-Prot
Match: EIF3G_NEUCR (Eukaryotic translation initiation factor 3 subunit G OS=Neurospora crassa GN=tif-35 PE=3 SV=2)

HSP 1 Score: 58.151 bits (139), Expect = 4.069e-13
Identity = 32/75 (42.67%), Postives = 44/75 (58.67%), Query Frame = 3
Query:  189 QPAAAGATKGTYVPPGMR------AGAERTGTHMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVD 395
            Q AA    KG+YVPP +R      A  ER G     R+D  ++RVTN+SE   E +L ++F  FG V+RV++A D
Sbjct:  177 QGAAGAGKKGSYVPPALRGAGGAAAAGERMGGKYGERDDLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKD 251          

HSP 2 Score: 35.4242 bits (80), Expect = 4.069e-13
Identity = 19/43 (44.19%), Postives = 24/43 (55.81%), Query Frame = 2
Query:   80 CRTCGKKGDHWTSRCPFKDLAAP-----AETFIDKPAASETAA 193
            CR C   G+H+T+RCP+KD  AP     A   +   AA E AA
Sbjct:  134 CRICN--GEHFTARCPYKDTMAPIGEAGAAADVAASAADEAAA 174          
BLAST of CK740325 vs. ExPASy Swiss-Prot
Match: EIF3G_NEOFI (Eukaryotic translation initiation factor 3 subunit G OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=TIF35 PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.954e-12
Identity = 33/73 (45.21%), Postives = 44/73 (60.27%), Query Frame = 3
Query:  192 PAAAGATKGT--YVPPGMRAGAERTGTHMR---RRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVD 395
            PAA G   GT  YVPP +R GA   G  M     ++D  ++RVTN+SE   E +L +LF  FG V+RV++A D
Sbjct:  172 PAAGGLGAGTSSYVPPHLRKGAAAGGERMAGKYEKDDLATLRVTNVSELAEESELRDLFERFGRVTRVFLARD 244          

HSP 2 Score: 36.1946 bits (82), Expect = 1.954e-12
Identity = 17/34 (50.00%), Postives = 23/34 (67.65%), Query Frame = 2
Query:   80 CRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAAS 181
            CR C   G+H+T+RCPFKD  AP    +D+ AA+
Sbjct:  135 CRICS--GEHFTARCPFKDTMAP----VDETAAA 162          
BLAST of CK740325 vs. ExPASy Swiss-Prot
Match: EIF3G_ASPFU (Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus fumigatus GN=tif35 PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.954e-12
Identity = 33/73 (45.21%), Postives = 44/73 (60.27%), Query Frame = 3
Query:  192 PAAAGATKGT--YVPPGMRAGAERTGTHMR---RRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVD 395
            PAA G   GT  YVPP +R GA   G  M     ++D  ++RVTN+SE   E +L +LF  FG V+RV++A D
Sbjct:  172 PAAGGLGAGTSSYVPPHLRKGAAAGGERMAGKYEKDDLATLRVTNVSELAEESELRDLFERFGRVTRVFLARD 244          

HSP 2 Score: 36.1946 bits (82), Expect = 1.954e-12
Identity = 17/34 (50.00%), Postives = 23/34 (67.65%), Query Frame = 2
Query:   80 CRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAAS 181
            CR C   G+H+T+RCPFKD  AP    +D+ AA+
Sbjct:  135 CRICS--GEHFTARCPFKDTMAP----VDETAAA 162          
BLAST of CK740325 vs. ExPASy Swiss-Prot
Match: EIF3G_ASPFC (Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=tif35 PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.954e-12
Identity = 33/73 (45.21%), Postives = 44/73 (60.27%), Query Frame = 3
Query:  192 PAAAGATKGT--YVPPGMRAGAERTGTHMR---RRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVD 395
            PAA G   GT  YVPP +R GA   G  M     ++D  ++RVTN+SE   E +L +LF  FG V+RV++A D
Sbjct:  172 PAAGGLGAGTSSYVPPHLRKGAAAGGERMAGKYEKDDLATLRVTNVSELAEESELRDLFERFGRVTRVFLARD 244          

HSP 2 Score: 36.1946 bits (82), Expect = 1.954e-12
Identity = 17/34 (50.00%), Postives = 23/34 (67.65%), Query Frame = 2
Query:   80 CRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAAS 181
            CR C   G+H+T+RCPFKD  AP    +D+ AA+
Sbjct:  135 CRICS--GEHFTARCPFKDTMAP----VDETAAA 162          
BLAST of CK740325 vs. ExPASy Swiss-Prot
Match: EIF3G_EMENI (Eukaryotic translation initiation factor 3 subunit G OS=Emericella nidulans GN=tif35 PE=3 SV=2)

HSP 1 Score: 53.9138 bits (128), Expect = 1.955e-12
Identity = 30/67 (44.78%), Postives = 42/67 (62.69%), Query Frame = 3
Query:  204 GATKGTYVPPGMRAGAERTGTHMR---RRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVD 395
            GA  G+YVPP +R GA   G  M     ++D  ++RVTN+SE   E +L +LF  FG V+RV++A D
Sbjct:  177 GAGGGSYVPPHLRKGAAGGGERMAGKYEKDDLATLRVTNVSELAEEQELRDLFERFGRVTRVFLARD 243          

HSP 2 Score: 37.3502 bits (85), Expect = 1.955e-12
Identity = 17/33 (51.52%), Postives = 22/33 (66.67%), Query Frame = 2
Query:   80 CRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAA 178
            CR C   G+H+T+RCPFKD  AP    +D+P A
Sbjct:  133 CRICS--GEHFTARCPFKDTMAP----VDEPGA 159          
BLAST of CK740325 vs. ExPASy Swiss-Prot
Match: EIF3G_ASPOR (Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus oryzae GN=tif35 PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 1.955e-12
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 3
Query:  198 AAGATKGTYVPPGMRAGAERTGTHMR---RRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVD 395
            A G   G+YVPP +R GA   G  M     ++D  ++RVTN+SE   E +L +LF  FG V+RV++A D
Sbjct:  173 AVGTGSGSYVPPHLRKGAAGGGERMGGKFEKDDLATLRVTNVSELAEEGELRDLFERFGRVTRVFLARD 241          

HSP 2 Score: 37.3502 bits (85), Expect = 1.955e-12
Identity = 17/33 (51.52%), Postives = 22/33 (66.67%), Query Frame = 2
Query:   80 CRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAA 178
            CR C   G+H+T+RCPFKD  AP    +D+P A
Sbjct:  134 CRICS--GEHFTARCPFKDTMAP----VDEPTA 160          
BLAST of CK740325 vs. ExPASy Swiss-Prot
Match: EIF3G_ASPNC (Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tif35 PE=3 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 3.296e-12
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 3
Query:  198 AAGATKGTYVPPGMRAGAERTGTHMR---RRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVD 395
            A GA   +YVPP +R GA   G  M     ++D  ++RVTN+SE   E +L +LF  FG V+RV++A D
Sbjct:  174 ALGAGTSSYVPPHLRKGAAGGGERMAGKYEKDDLATLRVTNVSELAEEGELRDLFERFGRVTRVFLARD 242          

HSP 2 Score: 37.7354 bits (86), Expect = 3.296e-12
Identity = 18/37 (48.65%), Postives = 23/37 (62.16%), Query Frame = 2
Query:   80 CRTCGKKGDHWTSRCPFKDLAAPAETFIDKPAASETA 190
            CR C   G+H+T+RCPFKD  AP    +D+P A   A
Sbjct:  134 CRICS--GEHFTARCPFKDTMAP----VDEPTAGGEA 164          
BLAST of CK740325 vs. ExPASy Swiss-Prot
Match: EIF3G_SCLS1 (Eukaryotic translation initiation factor 3 subunit G OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif35 PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 4.280e-12
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 3
Query:  192 PAAAGATKGTYVPPGMR----AGAERTGTHMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVD 395
            P   GA K +YVPP +R    AG ER G     R+D  ++RVTN+SE   E +L ++F  FG V+RV++A D
Sbjct:  171 PGGLGAGKSSYVPPHLRNGGAAGGERMGGGKFERDDLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKD 242          

HSP 2 Score: 31.187 bits (69), Expect = 4.280e-12
Identity = 12/23 (52.17%), Postives = 16/23 (69.57%), Query Frame = 2
Query:   80 CRTCGKKGDHWTSRCPFKDLAAP 148
            CR C   G+H+T++CPFK   AP
Sbjct:  131 CRICS--GEHFTAKCPFKGTMAP 151          
The following BLAST results are available for this feature:
BLAST of CK740325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
EIF3G_SCHPO3.663e-1552.11Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_USTMA8.017e-1550.68Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_NEUCR4.069e-1342.67Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_NEOFI1.954e-1245.21Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_ASPFU1.954e-1245.21Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_ASPFC1.954e-1245.21Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_EMENI1.955e-1244.78Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_ASPOR1.955e-1243.48Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_ASPNC3.296e-1243.48Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_SCLS14.280e-1244.44Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6469 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740325 ID=CK740325; Name=CK740325; organism=Citrus sinensis; type=EST; length=396bp
CCTCGTGCGCACGAGGGAGACAAAGGCTGCAGGAGATTCCTTGGCGCAAC
TTGGGAAAGGTGGTGCTGTTCTCATGGTGTGTAGGACTTGTGGTAAGAAG
GGTGATCACTGGACGTCAAGGTGCCCTTTCAAGGATCTTGCTGCTCCAGC
TGAGACATTCATTGATAAACCAGCTGCATCAGAGACTGCAGCCTGCTGCT
GCTGGCGCGACCAAGGGAACATATGTTCCTCCTGGCATGAGAGCAGGGGC
GGAGAGAACTGGAACCCATATGAGACGCAGGAATGATGAGAACTCTGTTA
GGGTCACCAACCTATCGGAGGACACTCGGGAACCTGACTTGCTTGAGCTC
TTCCGACCTTTTGGTGCTGTTAGCCGAGTTTATGTTGCTGTTGATC
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