CK740325

Overview
NameCK740325
Unique NameCK740325
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length396
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740325_ssr193 microsatellite CK740325_ssr193:193..204. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12624 contig Csv1_Contig12624:52..446. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740325 vs. ExPASy Swiss-Prot
Match: EIF3G_BOTFB (Eukaryotic translation initiation factor 3 subunit G OS=Botryotinia fuckeliana (strain B05.10) GN=tif35 PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 4.280e-12
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 3
Query:  192 PAAAGATKGTYVPPGMR----AGAERTGTHMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVD 395
            P   GA K +YVPP +R    AG ER G     R+D  ++RVTN+SE   E +L ++F  FG V+RV++A D
Sbjct:  171 PGGLGAGKSSYVPPHLRNGGTAGGERMGGGKFERDDLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKD 242          

HSP 2 Score: 31.187 bits (69), Expect = 4.280e-12
Identity = 12/23 (52.17%), Postives = 16/23 (69.57%), Query Frame = 2
Query:   80 CRTCGKKGDHWTSRCPFKDLAAP 148
            CR C   G+H+T++CPFK   AP
Sbjct:  131 CRICS--GEHFTAKCPFKGTMAP 151          
BLAST of CK740325 vs. ExPASy Swiss-Prot
Match: EIF3G_ASPTN (Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tif35 PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 5.560e-12
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 3
Query:  198 AAGATKGTYVPPGMRAGAERTGTHMR---RRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVD 395
            A G   G+YVPP +R GA   G  M     ++D  ++RVTN+SE   E +L +LF  FG V+RV++A D
Sbjct:  172 AVGTGTGSYVPPHLRKGAAGGGERMAGKYEKDDLATLRVTNVSELAEEGELRDLFERFGRVTRVFLARD 240          

HSP 2 Score: 35.8094 bits (81), Expect = 5.560e-12
Identity = 14/25 (56.00%), Postives = 18/25 (72.00%), Query Frame = 2
Query:   80 CRTCGKKGDHWTSRCPFKDLAAPAE 154
            CR C   G+H+T+RCPFKD  AP +
Sbjct:  134 CRICS--GEHFTARCPFKDTMAPVD 156          
BLAST of CK740325 vs. ExPASy Swiss-Prot
Match: EIF3G_ASPCL (Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus clavatus GN=tif35 PE=3 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 7.215e-12
Identity = 32/74 (43.24%), Postives = 44/74 (59.46%), Query Frame = 3
Query:  189 QPAAAGATKGT--YVPPGMRAGAERTGTHMR---RRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVD 395
            + AA G   GT  YVPP MR GA   G  M     ++D  ++RVTN+SE   E ++ +LF  FG V+RV++A D
Sbjct:  171 EAAAGGLGAGTSSYVPPHMRKGAASGGERMAGKYEKDDLATLRVTNVSELAEESEIRDLFERFGRVTRVFLARD 244          

HSP 2 Score: 36.1946 bits (82), Expect = 7.215e-12
Identity = 18/42 (42.86%), Postives = 24/42 (57.14%), Query Frame = 2
Query:   80 CRTCGKKGDHWTSRCPFKDLAAPAETFI----DKPAASETAA 193
            CR C   G+H+T+RCPFKD  AP +        +P A + AA
Sbjct:  134 CRICS--GEHFTARCPFKDTMAPVDESTGAAGGEPGAEDEAA 173          
BLAST of CK740325 vs. ExPASy Swiss-Prot
Match: EIF3G_MAGGR (Eukaryotic translation initiation factor 3 subunit G OS=Magnaporthe grisea GN=TIF35 PE=3 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 2.658e-11
Identity = 29/72 (40.28%), Postives = 42/72 (58.33%), Query Frame = 3
Query:  201 AGATKGTYVPPGMRAGAER-------TGTHMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVD 395
            AGA KG+YVPP +R   +         G     R+D  ++RVTN+SE   E +L ++F  FG V+RV++A D
Sbjct:  186 AGAKKGSYVPPALRGDRKEGEKMGGGAGGKYGERDDLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKD 257          

HSP 2 Score: 33.8834 bits (76), Expect = 2.658e-11
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 2
Query:   80 CRTCGKKGDHWTSRCPFKDLAAP 148
            CR C   G+H+T+RCP+KD  AP
Sbjct:  136 CRICN--GEHFTARCPYKDTMAP 156          
BLAST of CK740325 vs. ExPASy Swiss-Prot
Match: EIF3G_CRYNE (Eukaryotic translation initiation factor 3 subunit G OS=Cryptococcus neoformans GN=TIF35 PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 9.810e-11
Identity = 34/74 (45.95%), Postives = 40/74 (54.05%), Query Frame = 3
Query:  186 LQPAAAGATKGTYVPPGMRAGAERTGTHMRRRNDE-NSVRVTNLSEDTREPDLLELFRPF---GAVSRVYVAVD 395
            L    AG T G YVPP  RAGA   G  M R  DE  ++RVT+LS D  E DL  LF+PF   G + R  +  D
Sbjct:  168 LAAKGAGETGGKYVPPSQRAGATGAGDSMFRARDELPTLRVTSLSIDAEEDDLRALFQPFAKNGKLGRANIVRD 241          

HSP 2 Score: 30.8018 bits (68), Expect = 9.810e-11
Identity = 12/24 (50.00%), Postives = 17/24 (70.83%), Query Frame = 2
Query:   74 MVCRTCGKKGDHWTSRCPFKDLAA 145
            +VCR C   G H+T+RCPF++  A
Sbjct:  126 VVCRLCS--GQHYTARCPFREQLA 147          
The following BLAST results are available for this feature:
BLAST of CK740325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
EIF3G_BOTFB4.280e-1244.44Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_ASPTN5.560e-1243.48Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_ASPCL7.215e-1243.24Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_MAGGR2.658e-1140.28Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_CRYNE9.810e-1145.95Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6469 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740325 ID=CK740325; Name=CK740325; organism=Citrus sinensis; type=EST; length=396bp
CCTCGTGCGCACGAGGGAGACAAAGGCTGCAGGAGATTCCTTGGCGCAAC
TTGGGAAAGGTGGTGCTGTTCTCATGGTGTGTAGGACTTGTGGTAAGAAG
GGTGATCACTGGACGTCAAGGTGCCCTTTCAAGGATCTTGCTGCTCCAGC
TGAGACATTCATTGATAAACCAGCTGCATCAGAGACTGCAGCCTGCTGCT
GCTGGCGCGACCAAGGGAACATATGTTCCTCCTGGCATGAGAGCAGGGGC
GGAGAGAACTGGAACCCATATGAGACGCAGGAATGATGAGAACTCTGTTA
GGGTCACCAACCTATCGGAGGACACTCGGGAACCTGACTTGCTTGAGCTC
TTCCGACCTTTTGGTGCTGTTAGCCGAGTTTATGTTGCTGTTGATC
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