CK740326

Overview
NameCK740326
Unique NameCK740326
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2264 contig Csv1_Contig2264:281..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UB2L6_BOVIN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos taurus GN=UBE2L6 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.597e-11
Identity = 29/96 (30.21%), Postives = 51/96 (53.12%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQ 369
            F+L + F  +YP +PPTV+F +R++HPN+  DG +CL I+ +  W        +L ++  L+  P P  P   E A   +++   + +  +E   Q
Sbjct:   51 FRLCISFPREYPFQPPTVKFTTRIYHPNVDRDGRVCLPIISKKNWKASTRTCQVLEALNMLVNQPEPGQPVRLELAEQLTQDPELFDQMAQEFTLQ 146          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBE2U_HUMAN (Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens GN=UBE2U PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.391e-11
Identity = 34/93 (36.56%), Postives = 57/93 (61.29%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQN--QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVR 354
            F+LT+ FT +Y   PP V+F++  FHPN+    G  C+D L N  +W+  Y +++IL ++Q +L +P   +P N EAAR+  +++  Y   +R
Sbjct:   53 FQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILR 145          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC12_CAEEL (NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis elegans GN=ubc-12 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.429e-11
Identity = 35/102 (34.31%), Postives = 59/102 (57.84%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL------QNQWSPIYDVAAILTSIQSLLCD-PNPNSPANSEAARMFSENKREYHRRVREIVEQ 369
            F+  +    +Y N PP V+ +++++HPNI  DGSICL IL      Q  W P  ++  ++  + SL  D  + N   N +AA+M+S+N+  ++ RVRE + +
Sbjct:   77 FRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILRQNSLDQYGWRPTRNLTDVVHGLVSLFNDLMDFNDALNIQAAQMWSQNRESFNHRVREYISR 178          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBCX_PICAN (Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia angusta GN=PEX4 PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 7.720e-11
Identity = 33/100 (33.00%), Postives = 49/100 (49.00%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVS----------------------RMFHPNI-YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM 315
            +KL +    +YP  PP ++FV                       +M HPN+ +  G ICLDILQ +WSP + + + L +I  LL +P P SP N + A +
Sbjct:   61 WKLEIDIPTNYPLDPPKIKFVVFGEEKIRQLQRKTSSGARKVCYKMPHPNVNFKTGEICLDILQQKWSPAWTLQSALVAIVVLLANPEPLSPLNIDMANL 160          

HSP 2 Score: 27.335 bits (59), Expect = 7.720e-11
Identity = 9/22 (40.91%), Postives = 16/22 (72.73%), Query Frame = 3
Query:    9 PQDNSIMLWNAVIFGPDDTPWD 74
            P ++ +  W+AVI GPD +P++
Sbjct:   36 PLEDGLFRWSAVIRGPDQSPFE 57          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UB2L6_HUMAN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo sapiens GN=UBE2L6 PE=1 SV=4)

HSP 1 Score: 65.855 bits (159), Expect = 9.867e-11
Identity = 27/92 (29.35%), Postives = 50/92 (54.35%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVRE 357
            F L + F  +YP KPP ++F ++++HPN+  +G ICL I+ ++ W P      +L ++  L+  PN   P   + A + ++N   + +   E
Sbjct:   51 FNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEE 142          
The following BLAST results are available for this feature:
BLAST of CK740326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
UB2L6_BOVIN2.597e-1130.21Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos ta... [more]
UBE2U_HUMAN3.391e-1136.56Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens ... [more]
UBC12_CAEEL4.429e-1134.31NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis ... [more]
UBCX_PICAN7.720e-1133.00Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia a... [more]
UB2L6_HUMAN9.867e-1129.35Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6470 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740326 ID=CK740326; Name=CK740326; organism=Citrus sinensis; type=EST; length=463bp
GTGGTGCTCCTCAGGACAACAGTATAATGCTTTGGAATGCTGTTATATTC
GGGCCGGATGACACCCCATGGGATGGAGGTACCGTTTAAATTGACACTTC
AGTTCACAGAGGATTATCCAAATAAGCCACCAACAGTGCGCTTTGTTTCT
CGGATGTTCCATCCAAATATTTATGCGGATGGAAGCATTTGCTTGGACAT
TCTACAAAATCAGTGGAGTCCAATTTACGATGTAGCAGCAATACTCACGT
CAATTCAGTCATTGCTTTGTGACCCAAATCCAAACTCTCCTGCAAATTCG
GAGGCAGCACGGATGTTTAGCGAGAACAAGCGTGAATACCATAGGAGAGT
ACGGGAAATTGTTGAGCAGAGTTGGACTGCTGACTAGTGGCAACTTGTTG
GAATGTAGGGAACTTCAAAAATAGTCCAATGGCTTGTTCTAAATAACATT
TAAGATTCAAAAG
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