CK740326 | Citrus Genome Database

Overview


Name	CK740326
Unique Name	CK740326
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	463

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig2264	contig	Csv1_Contig2264:281..742.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.314e-26
Identity = 48/91 (52.75%), Postives = 66/91 (72.53%), Query Frame = 1

Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVRE 357
            F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +Y+R  RE
Sbjct:   50 FFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140

HSP 2 Score: 29.261 bits (64), Expect = 5.314e-26
Identity = 10/24 (41.67%), Postives = 15/24 (62.50%), Query Frame = 3

Query:    9 PQDNSIMLWNAVIFGPDDTPWDGG 80
            P  + +  W A I GP+D+P+ GG
Sbjct:   25 PVGDDMFHWQATIMGPNDSPYQGG 48

BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.314e-26
Identity = 48/91 (52.75%), Postives = 66/91 (72.53%), Query Frame = 1

Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVRE 357
            F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +Y+R  RE
Sbjct:   50 FFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140

HSP 2 Score: 29.261 bits (64), Expect = 5.314e-26
Identity = 10/24 (41.67%), Postives = 15/24 (62.50%), Query Frame = 3

Query:    9 PQDNSIMLWNAVIFGPDDTPWDGG 80
            P  + +  W A I GP+D+P+ GG
Sbjct:   25 PVGDDMFHWQATIMGPNDSPYQGG 48

BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.314e-26
Identity = 48/91 (52.75%), Postives = 66/91 (72.53%), Query Frame = 1

Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVRE 357
            F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +Y+R  RE
Sbjct:   50 FFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140

HSP 2 Score: 29.261 bits (64), Expect = 5.314e-26
Identity = 10/24 (41.67%), Postives = 15/24 (62.50%), Query Frame = 3

Query:    9 PQDNSIMLWNAVIFGPDDTPWDGG 80
            P  + +  W A I GP+D+P+ GG
Sbjct:   25 PVGDDMFHWQATIMGPNDSPYQGG 48

BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.314e-26
Identity = 48/91 (52.75%), Postives = 66/91 (72.53%), Query Frame = 1

Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVRE 357
            F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +Y+R  RE
Sbjct:   50 FFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140

HSP 2 Score: 29.261 bits (64), Expect = 5.314e-26
Identity = 10/24 (41.67%), Postives = 15/24 (62.50%), Query Frame = 3

Query:    9 PQDNSIMLWNAVIFGPDDTPWDGG 80
            P  + +  W A I GP+D+P+ GG
Sbjct:   25 PVGDDMFHWQATIMGPNDSPYQGG 48

BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.314e-26
Identity = 48/91 (52.75%), Postives = 66/91 (72.53%), Query Frame = 1

Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVRE 357
            F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +Y+R  RE
Sbjct:   50 FFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140

HSP 2 Score: 29.261 bits (64), Expect = 5.314e-26
Identity = 10/24 (41.67%), Postives = 15/24 (62.50%), Query Frame = 3

Query:    9 PQDNSIMLWNAVIFGPDDTPWDGG 80
            P  + +  W A I GP+D+P+ GG
Sbjct:   25 PVGDDMFHWQATIMGPNDSPYQGG 48

BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.526e-25
Identity = 48/91 (52.75%), Postives = 66/91 (72.53%), Query Frame = 1

Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVRE 357
            F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +Y+R  RE
Sbjct:   50 FFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140

HSP 2 Score: 29.261 bits (64), Expect = 1.526e-25
Identity = 10/24 (41.67%), Postives = 15/24 (62.50%), Query Frame = 3

Query:    9 PQDNSIMLWNAVIFGPDDTPWDGG 80
            P  + +  W A I GP+D+P+ GG
Sbjct:   25 PVGDDMFHWQATIMGPNDSPYQGG 48

BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.526e-25
Identity = 48/91 (52.75%), Postives = 66/91 (72.53%), Query Frame = 1

Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVRE 357
            F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +Y+R  RE
Sbjct:   50 FFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140

HSP 2 Score: 29.261 bits (64), Expect = 1.526e-25
Identity = 10/24 (41.67%), Postives = 15/24 (62.50%), Query Frame = 3

Query:    9 PQDNSIMLWNAVIFGPDDTPWDGG 80
            P  + +  W A I GP+D+P+ GG
Sbjct:   25 PVGDDMFHWQATIMGPNDSPYQGG 48

BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.526e-25
Identity = 48/91 (52.75%), Postives = 66/91 (72.53%), Query Frame = 1

Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVRE 357
            F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +Y+R  RE
Sbjct:   50 FFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140

HSP 2 Score: 29.261 bits (64), Expect = 1.526e-25
Identity = 10/24 (41.67%), Postives = 15/24 (62.50%), Query Frame = 3

Query:    9 PQDNSIMLWNAVIFGPDDTPWDGG 80
            P  + +  W A I GP+D+P+ GG
Sbjct:   25 PVGDDMFHWQATIMGPNDSPYQGG 48

BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.526e-25
Identity = 48/91 (52.75%), Postives = 66/91 (72.53%), Query Frame = 1

Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVRE 357
            F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +Y+R  RE
Sbjct:   50 FFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140

HSP 2 Score: 29.261 bits (64), Expect = 1.526e-25
Identity = 10/24 (41.67%), Postives = 15/24 (62.50%), Query Frame = 3

Query:    9 PQDNSIMLWNAVIFGPDDTPWDGG 80
            P  + +  W A I GP+D+P+ GG
Sbjct:   25 PVGDDMFHWQATIMGPNDSPYQGG 48

BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.526e-25
Identity = 48/91 (52.75%), Postives = 66/91 (72.53%), Query Frame = 1

Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVRE 357
            F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +Y+R  RE
Sbjct:   50 FFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140

HSP 2 Score: 29.261 bits (64), Expect = 1.526e-25
Identity = 10/24 (41.67%), Postives = 15/24 (62.50%), Query Frame = 3

Query:    9 PQDNSIMLWNAVIFGPDDTPWDGG 80
            P  + +  W A I GP+D+P+ GG
Sbjct:   25 PVGDDMFHWQATIMGPNDSPYQGG 48

The following BLAST results are available for this feature:

BLAST of CK740326 vs. ExPASy Swiss-Prot

BLAST of CK740326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225


Match Name	E-value	Identity	Description
UB2D2_XENLA	5.314e-26	52.75	Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev...	[more]
UB2D2_RAT	5.314e-26	52.75	Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve...	[more]
UB2D2_MOUSE	5.314e-26	52.75	Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus...	[more]
UB2D2_HUMAN	5.314e-26	52.75	Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens...	[more]
UB2D2_BOVIN	5.314e-26	52.75	Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G...	[more]
UB2D3_RAT	1.526e-25	52.75	Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve...	[more]
UB2D3_PONAB	1.526e-25	52.75	Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii...	[more]
UB2D3_MOUSE	1.526e-25	52.75	Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus...	[more]
UB2D3_MACFA	1.526e-25	52.75	Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci...	[more]
UB2D3_HUMAN	1.526e-25	52.75	Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_6470 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63H07 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK740326 ID=CK740326; Name=CK740326; organism=Citrus sinensis; type=EST; length=463bp
GTGGTGCTCCTCAGGACAACAGTATAATGCTTTGGAATGCTGTTATATTC
GGGCCGGATGACACCCCATGGGATGGAGGTACCGTTTAAATTGACACTTC
AGTTCACAGAGGATTATCCAAATAAGCCACCAACAGTGCGCTTTGTTTCT
CGGATGTTCCATCCAAATATTTATGCGGATGGAAGCATTTGCTTGGACAT
TCTACAAAATCAGTGGAGTCCAATTTACGATGTAGCAGCAATACTCACGT
CAATTCAGTCATTGCTTTGTGACCCAAATCCAAACTCTCCTGCAAATTCG
GAGGCAGCACGGATGTTTAGCGAGAACAAGCGTGAATACCATAGGAGAGT
ACGGGAAATTGTTGAGCAGAGTTGGACTGCTGACTAGTGGCAACTTGTTG
GAATGTAGGGAACTTCAAAAATAGTCCAATGGCTTGTTCTAAATAACATT
TAAGATTCAAAAG