CK740326

Overview
NameCK740326
Unique NameCK740326
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2264 contig Csv1_Contig2264:281..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.857e-23
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQSWT 378
            F +++ F+ DYP KPP V F ++++HPNI + GSICLDIL+ QWSP    + +L SI SLL DPNPN P   E A ++  +K +Y     E   Q WT
Sbjct:   51 FTVSIDFSSDYPFKPPKVNFKTKVYHPNIDSKGSICLDILKEQWSPAPTTSKVLLSICSLLTDPNPNDPLVPEIAHLYKVDKSKY-----ESTAQKWT 143          

HSP 2 Score: 30.8018 bits (68), Expect = 3.857e-23
Identity = 16/35 (45.71%), Postives = 19/35 (54.29%), Query Frame = 3
Query:    3 GAPQDNSIMLWNAVIFGPDDTPWDGG--TV*IDTS 101
            G   +  I  W A I GP D+P+ GG  TV ID S
Sbjct:   24 GPVAEEDIFHWQATIMGPHDSPYSGGVFTVSIDFS 58          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.019e-23
Identity = 47/98 (47.96%), Postives = 64/98 (65.31%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQSWT 378
            F +T+ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+  +K +Y     E   ++WT
Sbjct:   50 FLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKY-----ESTARTWT 142          

HSP 2 Score: 28.1054 bits (61), Expect = 5.019e-23
Identity = 10/24 (41.67%), Postives = 13/24 (54.17%), Query Frame = 3
Query:    9 PQDNSIMLWNAVIFGPDDTPWDGG 80
            P    +  W A I GP D+P+ GG
Sbjct:   25 PVAEDMFHWQATIMGPSDSPYSGG 48          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 8.499e-23
Identity = 46/98 (46.94%), Postives = 64/98 (65.31%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQSWT 378
            F +T+ F  DYP KPP V F +++FHPN+ ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+  ++ +Y     E   +SWT
Sbjct:   50 FLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ESTARSWT 142          

HSP 2 Score: 28.1054 bits (61), Expect = 8.499e-23
Identity = 10/24 (41.67%), Postives = 13/24 (54.17%), Query Frame = 3
Query:    9 PQDNSIMLWNAVIFGPDDTPWDGG 80
            P    +  W A I GP D+P+ GG
Sbjct:   25 PVAEDMFHWQATIMGPSDSPYSGG 48          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.104e-22
Identity = 43/95 (45.26%), Postives = 67/95 (70.53%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQ 369
            FK++L+F ++YP  PP ++F+S M+HPN+   G+ICLDIL+ +WS +Y+V  IL S+QSLL +PN  SP N+ AA ++  +  EY ++V    E+
Sbjct:   58 FKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDILKEKWSAVYNVETILLSLQSLLGEPNNRSPLNAVAAELWDADMEEYRKKVLACYEE 152          

HSP 2 Score: 27.335 bits (59), Expect = 1.104e-22
Identity = 10/21 (47.62%), Postives = 12/21 (57.14%), Query Frame = 3
Query:   15 DNSIMLWNAVIFGPDDTPWDG 77
            DN +  W   I GP DTP+ G
Sbjct:   35 DNDLTYWVGYITGPKDTPYSG 55          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.106e-22
Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQSWT 378
            F +T+ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+  +K +Y     E   +SWT
Sbjct:   50 FLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKY-----ESTARSWT 142          

HSP 2 Score: 25.7942 bits (55), Expect = 1.106e-22
Identity = 9/24 (37.50%), Postives = 13/24 (54.17%), Query Frame = 3
Query:    9 PQDNSIMLWNAVIFGPDDTPWDGG 80
            P    +  W A I GP ++P+ GG
Sbjct:   25 PVAEDMFHWQATIMGPSESPYAGG 48          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.440e-22
Identity = 44/91 (48.35%), Postives = 61/91 (67.03%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVRE 357
            F L++ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLL DPNP+ P   E A ++  ++  Y    RE
Sbjct:   50 FFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSARE 140          

HSP 2 Score: 27.7202 bits (60), Expect = 1.440e-22
Identity = 10/24 (41.67%), Postives = 14/24 (58.33%), Query Frame = 3
Query:    9 PQDNSIMLWNAVIFGPDDTPWDGG 80
            P  + +  W A I GP D+P+ GG
Sbjct:   25 PVGDDLFHWQATIMGPADSPYAGG 48          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.440e-22
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVRE 357
            F L + F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI S+L DPNP+ P   E A ++  ++  Y    RE
Sbjct:   50 FFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATARE 140          

HSP 2 Score: 28.4906 bits (62), Expect = 1.440e-22
Identity = 10/24 (41.67%), Postives = 13/24 (54.17%), Query Frame = 3
Query:    9 PQDNSIMLWNAVIFGPDDTPWDGG 80
            P    +  W A I GP D+P+ GG
Sbjct:   25 PVGEDLFHWQATIMGPGDSPYSGG 48          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.917e-22
Identity = 48/90 (53.33%), Postives = 71/90 (78.89%), Query Frame = 1
Query:   76 EVPFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHR 345
            ++ FK++L+F  DYP KPPTV+F ++ FHPN+  +G+ICLDIL+++WSP+Y+V ++L SIQSLL +PN  SP NS AA ++S N+ EY +
Sbjct:   52 QMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDILKDKWSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLWS-NQDEYKK 140          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.437e-22
Identity = 47/98 (47.96%), Postives = 64/98 (65.31%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQSWT 378
            F +T+ F  DYP KPP V F ++++HPNI ++GSICLDIL+ QWSP   V+ +L SI SLL DPNP+ P   E A ++  ++ +Y     E   QSWT
Sbjct:   50 FLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKY-----ESTAQSWT 142          

HSP 2 Score: 27.7202 bits (60), Expect = 2.437e-22
Identity = 10/24 (41.67%), Postives = 14/24 (58.33%), Query Frame = 3
Query:    9 PQDNSIMLWNAVIFGPDDTPWDGG 80
            P  + +  W A I GP D+P+ GG
Sbjct:   25 PTGDDMFQWQATIMGPADSPFAGG 48          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 2.439e-22
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVRE 357
            F L + F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI S+L DPNP+ P   E A ++   + +Y    RE
Sbjct:   50 FFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYESTARE 140          

HSP 2 Score: 28.1054 bits (61), Expect = 2.439e-22
Identity = 10/24 (41.67%), Postives = 13/24 (54.17%), Query Frame = 3
Query:    9 PQDNSIMLWNAVIFGPDDTPWDGG 80
            P    +  W A I GP D+P+ GG
Sbjct:   25 PVGEDLFHWQATIMGPSDSPYAGG 48          
The following BLAST results are available for this feature:
BLAST of CK740326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
UBC12_ARATH3.857e-2346.94Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UBC9_ARATH5.019e-2347.96SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC28_ARATH8.499e-2346.94Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC11_YEAST1.104e-2245.26Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC10_ARATH1.106e-2248.98Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC4_SCHPO1.440e-2248.35Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC1_COLGL1.440e-2247.25Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UBE2C_DICDI1.917e-2253.33Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]
UBC30_ARATH2.437e-2247.96Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC1_MAGGR2.439e-2247.25Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6470 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740326 ID=CK740326; Name=CK740326; organism=Citrus sinensis; type=EST; length=463bp
GTGGTGCTCCTCAGGACAACAGTATAATGCTTTGGAATGCTGTTATATTC
GGGCCGGATGACACCCCATGGGATGGAGGTACCGTTTAAATTGACACTTC
AGTTCACAGAGGATTATCCAAATAAGCCACCAACAGTGCGCTTTGTTTCT
CGGATGTTCCATCCAAATATTTATGCGGATGGAAGCATTTGCTTGGACAT
TCTACAAAATCAGTGGAGTCCAATTTACGATGTAGCAGCAATACTCACGT
CAATTCAGTCATTGCTTTGTGACCCAAATCCAAACTCTCCTGCAAATTCG
GAGGCAGCACGGATGTTTAGCGAGAACAAGCGTGAATACCATAGGAGAGT
ACGGGAAATTGTTGAGCAGAGTTGGACTGCTGACTAGTGGCAACTTGTTG
GAATGTAGGGAACTTCAAAAATAGTCCAATGGCTTGTTCTAAATAACATT
TAAGATTCAAAAG
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