CK740326

Overview
NameCK740326
Unique NameCK740326
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2264 contig Csv1_Contig2264:281..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.170e-22
Identity = 46/98 (46.94%), Postives = 64/98 (65.31%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQSWT 378
            F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+  ++ +Y     E   +SWT
Sbjct:   50 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSWT 142          

HSP 2 Score: 26.9498 bits (58), Expect = 3.170e-22
Identity = 10/24 (41.67%), Postives = 13/24 (54.17%), Query Frame = 3
Query:    9 PQDNSIMLWNAVIFGPDDTPWDGG 80
            P    +  W A I GP D+P+ GG
Sbjct:   25 PVAEDMFHWQATIMGPTDSPYAGG 48          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.367e-22
Identity = 46/98 (46.94%), Postives = 64/98 (65.31%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQSWT 378
            F +T+ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+  ++ +Y     E   ++WT
Sbjct:   50 FLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----EATARNWT 142          

HSP 2 Score: 25.7942 bits (55), Expect = 5.367e-22
Identity = 9/24 (37.50%), Postives = 13/24 (54.17%), Query Frame = 3
Query:    9 PQDNSIMLWNAVIFGPDDTPWDGG 80
            P    +  W A I GP ++P+ GG
Sbjct:   25 PVAEDMFHWQATIMGPAESPYSGG 48          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 6.983e-22
Identity = 45/98 (45.92%), Postives = 65/98 (66.33%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQSWT 378
            F + + F  DYP KPP V F +++FHPNI ++G+ICLDIL++QWSP   ++ +L SI SLL DPNP+ P   E A ++  +K +Y     E + +SWT
Sbjct:   50 FLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKY-----EAMARSWT 142          

HSP 2 Score: 27.7202 bits (60), Expect = 6.983e-22
Identity = 9/24 (37.50%), Postives = 14/24 (58.33%), Query Frame = 3
Query:    9 PQDNSIMLWNAVIFGPDDTPWDGG 80
            P    +  W A I GP+++P+ GG
Sbjct:   25 PTGEDMFHWQATIMGPNESPYSGG 48          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 9.047e-22
Identity = 43/108 (39.81%), Postives = 66/108 (61.11%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICL------------DILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQS 372
            F   + F ++YPN PPTVRF S M+HPN+Y DG +C+            ++   +W+P++ V +I+ SI S+L  PN  SPAN EAA+ + E + E+ ++VR  V +S
Sbjct:   57 FNAIMSFPQNYPNSPPTVRFTSEMWHPNVYPDGRVCISIHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANIEAAKDWREKQDEFKKKVRRAVRKS 164          

HSP 2 Score: 28.1054 bits (61), Expect = 9.047e-22
Identity = 10/26 (38.46%), Postives = 15/26 (57.69%), Query Frame = 3
Query:    3 GAPQDNSIMLWNAVIFGPDDTPWDGG 80
            G   D+++  W   I GP +T +DGG
Sbjct:   30 GFVDDSNVFEWQVTIIGPPETLYDGG 55          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.178e-21
Identity = 44/109 (40.37%), Postives = 66/109 (60.55%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQS 372
            FK  L F  DYP KPP ++F+S ++HPNI  +G++C+ IL             + +W P++ V  IL S+ S+L DPN  SPAN +AA+M  EN  E+ ++V + V +S
Sbjct:   53 FKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRS 161          

HSP 2 Score: 30.4166 bits (67), Expect = 1.178e-21
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 3
Query:    3 GAPQDNSIMLWNAVIFGPDDTPWDGG 80
            G   DN I  W  ++ GP DT ++GG
Sbjct:   26 GLVDDNDIYKWEVLVIGPPDTLYEGG 51          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC20_ARATH (Ubiquitin carrier protein E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.242e-21
Identity = 48/92 (52.17%), Postives = 69/92 (75.00%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREI 360
            ++L+L F+ DYP KPP V+F +  FHPN+   G+ICLDILQ++WS  YDV  IL SIQSLL +PN +SP N++AA+++S N+ EY + V ++
Sbjct:   84 YRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLWS-NQEEYRKMVEKL 174          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.001e-21
Identity = 45/98 (45.92%), Postives = 64/98 (65.31%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQSWT 378
            F +++ F  DYP KPP V F ++++HPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+  ++ +Y     E   +SWT
Sbjct:   50 FLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKY-----ESTARSWT 142          

HSP 2 Score: 25.409 bits (54), Expect = 2.001e-21
Identity = 9/24 (37.50%), Postives = 13/24 (54.17%), Query Frame = 3
Query:    9 PQDNSIMLWNAVIFGPDDTPWDGG 80
            P    +  W A I GP ++P+ GG
Sbjct:   25 PVAEDMFHWQATIMGPPESPYAGG 48          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.372e-21
Identity = 41/109 (37.61%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQS 372
            F  TL F +DYP  PP ++F + ++HPN++ +G +C+ IL               +W P++    IL S+ S+L  PN  SPAN +AA+ F EN +E+ +RVR +V +S
Sbjct:   55 FHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESPANIDAAKEFRENPQEFKKRVRRLVRRS 163          

HSP 2 Score: 31.187 bits (69), Expect = 3.372e-21
Identity = 12/26 (46.15%), Postives = 16/26 (61.54%), Query Frame = 3
Query:    3 GAPQDNSIMLWNAVIFGPDDTPWDGG 80
            G   D SI  W  +I GP+DT ++GG
Sbjct:   28 GLVDDKSIFEWEVMIIGPEDTLYEGG 53          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC7_ARATH (Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.387e-21
Identity = 43/109 (39.45%), Postives = 66/109 (60.55%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQS 372
            F   + F ++YPN PPTVRF S M+HPN+Y+DG +C+ IL               +W+P++ V +I+ SI S+L  PN  SPAN EAA+ + + + E+ ++V   V +S
Sbjct:   54 FNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWRDKRDEFKKKVSRCVRKS 162          

HSP 2 Score: 27.335 bits (59), Expect = 4.387e-21
Identity = 10/26 (38.46%), Postives = 15/26 (57.69%), Query Frame = 3
Query:    3 GAPQDNSIMLWNAVIFGPDDTPWDGG 80
            G   + +I  W+  I GP DT ++GG
Sbjct:   27 GLVDEKNIFEWSVTIIGPPDTLYEGG 52          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 5.708e-21
Identity = 42/109 (38.53%), Postives = 63/109 (57.80%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQS 372
            +  TL+F  DYP  PPT++F    FHPN+Y DG++C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A +M+ E++ EY R VR +  ++
Sbjct:   55 YPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRLARKT 163          

HSP 2 Score: 29.6462 bits (65), Expect = 5.708e-21
Identity = 10/26 (38.46%), Postives = 16/26 (61.54%), Query Frame = 3
Query:    3 GAPQDNSIMLWNAVIFGPDDTPWDGG 80
            G   ++    W+ +I GPD TP++GG
Sbjct:   28 GPSNEDDFFTWDCLIQGPDGTPFEGG 53          
The following BLAST results are available for this feature:
BLAST of CK740326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
UBC4_SOLLC3.170e-2246.94Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC8_ARATH5.367e-2246.94Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC29_ARATH6.983e-2245.92Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC7_WHEAT9.047e-2239.81Ubiquitin-conjugating enzyme E2 7 OS=Triticum aest... [more]
UBC7_CAEEL1.178e-2140.37Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]
UBC20_ARATH1.242e-2152.17Ubiquitin carrier protein E2 20 OS=Arabidopsis tha... [more]
UBC11_ARATH2.001e-2145.92Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC15_SCHPO3.372e-2137.61Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]
UBC7_ARATH4.387e-2139.45Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis t... [more]
UBC7_SCHPO5.708e-2138.53Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6470 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740326 ID=CK740326; Name=CK740326; organism=Citrus sinensis; type=EST; length=463bp
GTGGTGCTCCTCAGGACAACAGTATAATGCTTTGGAATGCTGTTATATTC
GGGCCGGATGACACCCCATGGGATGGAGGTACCGTTTAAATTGACACTTC
AGTTCACAGAGGATTATCCAAATAAGCCACCAACAGTGCGCTTTGTTTCT
CGGATGTTCCATCCAAATATTTATGCGGATGGAAGCATTTGCTTGGACAT
TCTACAAAATCAGTGGAGTCCAATTTACGATGTAGCAGCAATACTCACGT
CAATTCAGTCATTGCTTTGTGACCCAAATCCAAACTCTCCTGCAAATTCG
GAGGCAGCACGGATGTTTAGCGAGAACAAGCGTGAATACCATAGGAGAGT
ACGGGAAATTGTTGAGCAGAGTTGGACTGCTGACTAGTGGCAACTTGTTG
GAATGTAGGGAACTTCAAAAATAGTCCAATGGCTTGTTCTAAATAACATT
TAAGATTCAAAAG
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