CK740326

Overview
NameCK740326
Unique NameCK740326
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2264 contig Csv1_Contig2264:281..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.412e-21
Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVRE 357
            +KLTL+F  DYP KPP V+F +  +HPN+   G+ICLDIL+  W+  YDV  IL S+QSLL +PN  SP N++AA M+S N+ EY + + E
Sbjct:   79 YKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWS-NQTEYKKVLHE 168          

HSP 2 Score: 21.557 bits (44), Expect = 7.412e-21
Identity = 7/22 (31.82%), Postives = 13/22 (59.09%), Query Frame = 3
Query:    9 PQDNSIMLWNAVIFGPDDTPWD 74
            P  +++  W A + GP DT ++
Sbjct:   54 PDGDNLFKWVATLDGPKDTVYE 75          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.458e-21
Identity = 41/91 (45.05%), Postives = 61/91 (67.03%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVRE 357
            F L++ F  DYP KPP V F ++++HPNI + G+ICLDIL++QWSP   ++ +L SI SLL D NP+ P   E A+++  +K +Y    +E
Sbjct:   51 FFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKTDKAKYEATAKE 141          

HSP 2 Score: 27.335 bits (59), Expect = 7.458e-21
Identity = 10/24 (41.67%), Postives = 14/24 (58.33%), Query Frame = 3
Query:    9 PQDNSIMLWNAVIFGPDDTPWDGG 80
            P  + +  W A I GP D+P+ GG
Sbjct:   26 PVGDDLYHWQASIMGPSDSPYAGG 49          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC14_ARATH (Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis thaliana GN=UBC14 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.659e-21
Identity = 43/109 (39.45%), Postives = 65/109 (59.63%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQS 372
            F   + F E+YP  PPTV F S M+HPN+Y+DG +C+ IL               +W+P++ V +I+ SI S+L  PN  SPAN EAA+ + +N+ E+ ++V   V +S
Sbjct:   55 FNAIMSFPENYPVSPPTVTFTSEMWHPNVYSDGKVCISILHPPGDDPHGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDNRAEFRKKVSRCVRRS 163          

HSP 2 Score: 26.5646 bits (57), Expect = 9.659e-21
Identity = 9/26 (34.62%), Postives = 15/26 (57.69%), Query Frame = 3
Query:    3 GAPQDNSIMLWNAVIFGPDDTPWDGG 80
            G   + ++  W+  I GP DT ++GG
Sbjct:   28 GLVDEKNVFQWSVSIMGPPDTLYEGG 53          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.694e-21
Identity = 42/91 (46.15%), Postives = 59/91 (64.84%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVRE 357
            FKL L   EDYP   P VRF+++++HPNI   G ICLD+L+++WSP   +  IL SIQ+LL  PNP+ P  ++ A ++  N+ E  R  RE
Sbjct:   52 FKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNARE 142          

HSP 2 Score: 28.4906 bits (62), Expect = 9.694e-21
Identity = 8/24 (33.33%), Postives = 18/24 (75.00%), Query Frame = 3
Query:    9 PQDNSIMLWNAVIFGPDDTPWDGG 80
            P +N+   ++ ++ GP+D+P++GG
Sbjct:   27 PDENNARYFHVIVTGPNDSPFEGG 50          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.257e-20
Identity = 43/109 (39.45%), Postives = 65/109 (59.63%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQS 372
            F   + F ++YPN PPTVRF S ++HPN+Y DG +C+ IL               +W+P++ V +I+ SI S+L  PN  SPAN EAA+ + E + E+ ++V   V +S
Sbjct:   54 FYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWREKRDEFKKKVSRCVRKS 162          

HSP 2 Score: 27.335 bits (59), Expect = 1.257e-20
Identity = 10/26 (38.46%), Postives = 15/26 (57.69%), Query Frame = 3
Query:    3 GAPQDNSIMLWNAVIFGPDDTPWDGG 80
            G   + +I  W+  I GP DT ++GG
Sbjct:   27 GLVDEKNIFEWSVTIIGPPDTLYEGG 52          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.262e-20
Identity = 41/91 (45.05%), Postives = 61/91 (67.03%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVRE 357
            F L++ F  DYP KPP + F ++++HPNI A+G+ICLDIL++QWSP   ++ +L SI SLL D NP+ P   E A ++  ++ +Y    RE
Sbjct:   51 FFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATARE 141          

HSP 2 Score: 26.5646 bits (57), Expect = 1.262e-20
Identity = 10/24 (41.67%), Postives = 14/24 (58.33%), Query Frame = 3
Query:    9 PQDNSIMLWNAVIFGPDDTPWDGG 80
            P  + +  W A I GP D+P+ GG
Sbjct:   26 PVGDDLYHWQASIMGPADSPYAGG 49          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC9_SCHPO (SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyces pombe GN=hus5 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.638e-20
Identity = 45/92 (48.91%), Postives = 59/92 (64.13%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVR 354
            +KLT+ F E+YP +PP  RF   +FHPN+Y  G++CL IL  +  W P   +  IL  IQ LL DPN  SPA +EA  MF ++K EY +RVR
Sbjct:   58 YKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVR 149          

HSP 2 Score: 21.557 bits (44), Expect = 1.638e-20
Identity = 8/19 (42.11%), Postives = 10/19 (52.63%), Query Frame = 3
Query:   24 IMLWNAVIFGPDDTPWDGG 80
            +M W   I G   T W+GG
Sbjct:   38 LMNWKVGIPGKPKTSWEGG 56          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.794e-20
Identity = 47/92 (51.09%), Postives = 68/92 (73.91%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREI 360
            ++L+L F+ DYP K P V+F +  FHPN+   G+ICLDILQ++WS  YDV  IL SIQSLL +PN +SP N++AA+++S N+ EY + V ++
Sbjct:   85 YRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQLWS-NQEEYRKMVEKL 175          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.794e-20
Identity = 47/98 (47.96%), Postives = 69/98 (70.41%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHR----RVREIVE 366
            FK+++ F  +YP  PPT+ F S M+HPN+   G+ICLDIL+++WS +Y+V  IL S+QSLL +PN  SP N++AA ++S++  EY R    R +EI E
Sbjct:   78 FKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYKRLLMQRYKEIDE 175          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.138e-20
Identity = 38/91 (41.76%), Postives = 62/91 (68.13%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVRE 357
            F L++ F  DYP KPP +   ++++HPNI ++G+ICLDIL++QWSP   ++ +L SI SLL D NP+ P   E A ++ +++++Y    +E
Sbjct:   50 FFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYEATAKE 140          

HSP 2 Score: 26.9498 bits (58), Expect = 2.138e-20
Identity = 10/24 (41.67%), Postives = 14/24 (58.33%), Query Frame = 3
Query:    9 PQDNSIMLWNAVIFGPDDTPWDGG 80
            P  + +  W A I GP D+P+ GG
Sbjct:   25 PVGDDLYHWQASIMGPPDSPYAGG 48          
The following BLAST results are available for this feature:
BLAST of CK740326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
UBE2C_SPISO7.412e-2151.65Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UBC5_YEAST7.458e-2145.05Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC14_ARATH9.659e-2139.45Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis ... [more]
UBE2N_DROME9.694e-2146.15Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]
UBC13_ARATH1.257e-2039.45Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis ... [more]
UBC4_YEAST1.262e-2045.05Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC9_SCHPO1.638e-2048.91SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyce... [more]
UBC19_ARATH1.794e-2051.09Ubiquitin carrier protein E2 19 OS=Arabidopsis tha... [more]
UBC11_SCHPO1.794e-2047.96Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBC4_CANAL2.138e-2041.76Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6470 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740326 ID=CK740326; Name=CK740326; organism=Citrus sinensis; type=EST; length=463bp
GTGGTGCTCCTCAGGACAACAGTATAATGCTTTGGAATGCTGTTATATTC
GGGCCGGATGACACCCCATGGGATGGAGGTACCGTTTAAATTGACACTTC
AGTTCACAGAGGATTATCCAAATAAGCCACCAACAGTGCGCTTTGTTTCT
CGGATGTTCCATCCAAATATTTATGCGGATGGAAGCATTTGCTTGGACAT
TCTACAAAATCAGTGGAGTCCAATTTACGATGTAGCAGCAATACTCACGT
CAATTCAGTCATTGCTTTGTGACCCAAATCCAAACTCTCCTGCAAATTCG
GAGGCAGCACGGATGTTTAGCGAGAACAAGCGTGAATACCATAGGAGAGT
ACGGGAAATTGTTGAGCAGAGTTGGACTGCTGACTAGTGGCAACTTGTTG
GAATGTAGGGAACTTCAAAAATAGTCCAATGGCTTGTTCTAAATAACATT
TAAGATTCAAAAG
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