CK740326

Overview
NameCK740326
Unique NameCK740326
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2264 contig Csv1_Contig2264:281..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC9A_DANRE (SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=ube2ia PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.746e-19
Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVR 354
            FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:   58 FKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          

HSP 2 Score: 26.1794 bits (56), Expect = 1.746e-19
Identity = 9/20 (45.00%), Postives = 12/20 (60.00%), Query Frame = 3
Query:   21 SIMLWNAVIFGPDDTPWDGG 80
            ++M W   I G   TPW+GG
Sbjct:   37 NLMNWECAIPGKKGTPWEGG 56          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.984e-19
Identity = 44/94 (46.81%), Postives = 66/94 (70.21%), Query Frame = 1
Query:   76 EVPFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVRE 357
            ++ +KL+L+F   YP   PTV+FV+  FHPN+ + G+ICLDIL+++WS +YDV  IL S+QSLL +PN  SP N  AA ++ +N+  Y + + E
Sbjct:   76 DLRYKLSLEFPSGYPYNAPTVKFVTPCFHPNVDSHGNICLDILKDKWSALYDVRTILLSLQSLLGEPNNESPLNPYAAELW-QNQTAYKKHLHE 168          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.419e-19
Identity = 44/95 (46.32%), Postives = 65/95 (68.42%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQ 369
            ++L+L F   YP   P V+F++  FHPN+   G+ICLDIL+++WS +YDV  IL SIQSLL +PN  SP N++AA M+++ K EY + +    E+
Sbjct:   81 YRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMWNDQK-EYKKYLDAFYEK 174          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.943e-19
Identity = 39/100 (39.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD-GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQSWTA 381
            F + ++   DYP +PP + F ++++HPN+ +  G+ICLDIL++QWSP+Y + + L S+QSLLC P P++P +++ A+++ +N +++ R  RE     WT+
Sbjct:   53 FVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTARE-----WTS 147          

HSP 2 Score: 22.3274 bits (46), Expect = 4.943e-19
Identity = 7/18 (38.89%), Postives = 12/18 (66.67%), Query Frame = 3
Query:   51 GPDDTPWDGGTV*IDTSV 104
            GP+ TP++GG   +D  +
Sbjct:   42 GPEGTPYEGGYFVVDIEI 59          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.489e-19
Identity = 41/109 (37.61%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQS 372
            F   L F  DYP  PP +RF   MFHPNIY DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A++M+ +++ ++++  ++IV++S
Sbjct:   54 FPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 162          

HSP 2 Score: 24.6386 bits (52), Expect = 6.489e-19
Identity = 9/26 (34.62%), Postives = 15/26 (57.69%), Query Frame = 3
Query:    3 GAPQDNSIMLWNAVIFGPDDTPWDGG 80
            G   + +   W A+I GP+DT ++ G
Sbjct:   27 GPMNEENFFEWEALIMGPEDTCFEFG 52          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.489e-19
Identity = 41/109 (37.61%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQS 372
            F   L F  DYP  PP +RF   MFHPNIY DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A++M+ +++ ++++  ++IV++S
Sbjct:   54 FPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 162          

HSP 2 Score: 24.6386 bits (52), Expect = 6.489e-19
Identity = 9/26 (34.62%), Postives = 15/26 (57.69%), Query Frame = 3
Query:    3 GAPQDNSIMLWNAVIFGPDDTPWDGG 80
            G   + +   W A+I GP+DT ++ G
Sbjct:   27 GPMNEENFFEWEALIMGPEDTCFEFG 52          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.489e-19
Identity = 41/109 (37.61%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQS 372
            F   L F  DYP  PP +RF   MFHPNIY DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A++M+ +++ ++++  ++IV++S
Sbjct:   54 FPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 162          

HSP 2 Score: 24.6386 bits (52), Expect = 6.489e-19
Identity = 9/26 (34.62%), Postives = 15/26 (57.69%), Query Frame = 3
Query:    3 GAPQDNSIMLWNAVIFGPDDTPWDGG 80
            G   + +   W A+I GP+DT ++ G
Sbjct:   27 GPMNEENFFEWEALIMGPEDTCFEFG 52          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UB2G2_BOVIN (Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.489e-19
Identity = 41/109 (37.61%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQS 372
            F   L F  DYP  PP +RF   MFHPNIY DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A++M+ +++ ++++  ++IV++S
Sbjct:   54 FPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKVAKQIVQKS 162          

HSP 2 Score: 24.6386 bits (52), Expect = 6.489e-19
Identity = 9/26 (34.62%), Postives = 15/26 (57.69%), Query Frame = 3
Query:    3 GAPQDNSIMLWNAVIFGPDDTPWDGG 80
            G   + +   W A+I GP+DT ++ G
Sbjct:   27 GPMNEENFFEWEALIMGPEDTCFEFG 52          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.466e-19
Identity = 36/84 (42.86%), Postives = 55/84 (65.48%), Query Frame = 1
Query:   85 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKRE 336
            FKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:   52 FKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 135          

HSP 2 Score: 28.8758 bits (63), Expect = 8.466e-19
Identity = 10/25 (40.00%), Postives = 18/25 (72.00%), Query Frame = 3
Query:    9 PQDNSIMLWNAVIFGPDDTPWDGGT 83
            P +++   ++ VI GP D+P++GGT
Sbjct:   27 PDESNARYFHVVIAGPQDSPFEGGT 51          
BLAST of CK740326 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 9.844e-19
Identity = 43/102 (42.16%), Postives = 70/102 (68.63%), Query Frame = 1
Query:   76 EVPFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYHRRVREIVEQSWTA 381
            ++ +KL+L+F   YP   PTV+F++  +HPN+   G+ICLDIL+++WS +YDV  IL SIQSLL +PN +SP N+ AA ++ +N   + + ++E   +  T+
Sbjct:   76 DLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTS 176          
The following BLAST results are available for this feature:
BLAST of CK740326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
UBC9A_DANRE1.746e-1943.48SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=u... [more]
UBE2C_XENLA1.984e-1946.81Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevi... [more]
UBE2C_DROME4.419e-1946.32Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]
UBC1_SCHPO4.943e-1939.00Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UB2G2_PONAB6.489e-1937.61Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]
UB2G2_MOUSE6.489e-1937.61Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN6.489e-1937.61Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UB2G2_BOVIN6.489e-1937.61Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus G... [more]
UBE2N_MACFA8.466e-1942.86Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBE2C_MACFA9.844e-1942.16Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6470 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740326 ID=CK740326; Name=CK740326; organism=Citrus sinensis; type=EST; length=463bp
GTGGTGCTCCTCAGGACAACAGTATAATGCTTTGGAATGCTGTTATATTC
GGGCCGGATGACACCCCATGGGATGGAGGTACCGTTTAAATTGACACTTC
AGTTCACAGAGGATTATCCAAATAAGCCACCAACAGTGCGCTTTGTTTCT
CGGATGTTCCATCCAAATATTTATGCGGATGGAAGCATTTGCTTGGACAT
TCTACAAAATCAGTGGAGTCCAATTTACGATGTAGCAGCAATACTCACGT
CAATTCAGTCATTGCTTTGTGACCCAAATCCAAACTCTCCTGCAAATTCG
GAGGCAGCACGGATGTTTAGCGAGAACAAGCGTGAATACCATAGGAGAGT
ACGGGAAATTGTTGAGCAGAGTTGGACTGCTGACTAGTGGCAACTTGTTG
GAATGTAGGGAACTTCAAAAATAGTCCAATGGCTTGTTCTAAATAACATT
TAAGATTCAAAAG
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