CK932608

Overview
NameCK932608
Unique NameCK932608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4140 contig Csv1_Contig4140:229..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB18_CAEBR (Ras-related protein Rab-18 OS=Caenorhabditis briggsae GN=rab-18 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.718e-32
Identity = 70/118 (59.32%), Postives = 86/118 (72.88%), Query Frame = 1
Query:    4 AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 357
            AIWDTAGQERFRTLT SYYRGAQG+I VYDVT R +F  L   W  E+D Y TN + IK++V NK+D  + R VT++EG+ FA+ +  LFIE SAKT+  VQ  FEEL+ KI+ TP L
Sbjct:   63 AIWDTAGQERFRTLTPSYYRGAQGVICVYDVTSRSSFEKLKH-WMTEVDTYCTNDNVIKMMVANKIDMPN-RTVTREEGLKFAKRHRTLFIEASAKTKEGVQCTFEELIEKIIQTPDL 178          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB18_DICDI (Ras-related protein Rab-18 OS=Dictyostelium discoideum GN=rab18 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.550e-32
Identity = 65/115 (56.52%), Postives = 89/115 (77.39%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTP 351
            IWDTAGQE+FR L SSYYRGA GII+ YDVT+R++F NL + W  E++ ++   + +KLLVGNK+DKE+ R VT++EG  FA++   LFIECSAK+++ +QQ FEEL  KI++ P
Sbjct:   59 IWDTAGQEKFRALISSYYRGAHGIILTYDVTKRESFDNL-NYWLNEVENFANRSNLVKLLVGNKIDKEN-REVTREEGAEFAKKKAMLFIECSAKSKIGIQQAFEELAQKIIEIP 171          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.543e-27
Identity = 68/144 (47.22%), Postives = 91/144 (63.19%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGC 438
            IWDTAGQERFRT+TSSYYRGAQGII+VYD T +D+FTN+   W  EID Y+  ++  KLLVGNK D  +E+VV   +  +FA  YG  FIE SAK   NV++CF  +   I +  + + E  K  + +I  +   ++    S C
Sbjct:   63 IWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQ-WMGEIDRYAC-ENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDIKNRLADIQETPKPDEVDIKSKNKTKSGGKKSFC 204          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.106e-25
Identity = 62/130 (47.69%), Postives = 88/130 (67.69%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF----EELVLKILDTPSLLAEGSKGLK 384
            IWDTAGQE FR++T SYYRGA G ++VYD+TRRDTF +L+  W ++   +S N + + +L+GNK D E+ R V K+EG  FARE+G +F+E SAKT  NV++ F    +E+  KI D    +   + G+K
Sbjct:   59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHS-NSNMVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEIYQKIQDGVFDINNEANGIK 186          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.445e-25
Identity = 67/156 (42.95%), Postives = 93/156 (59.62%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF----EELVLKILDTPSLLAEGSKGLK-------KNIFKQKPPEADAAASGCC 441
            IWDTAGQE FR++T SYYRGA G ++VYD+TRRDTF +L+  W ++   +S N + + +L+GNK D ES R V K+EG  FARE+G +F+E SAKT  NV++ F    +E+  KI +    +   + G+K        N           A  GCC
Sbjct:   59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHS-NSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNASHGSNQGGQQAGGGCC 212          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.445e-25
Identity = 66/145 (45.52%), Postives = 87/145 (60.00%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 441
            IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y+ +++  KLLVGNK D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I       A      K N+  Q  P   ++  GCC
Sbjct:   61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSGGSEKSNVNIQSTP-VKSSGGGCC 202          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.887e-25
Identity = 67/156 (42.95%), Postives = 93/156 (59.62%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF----EELVLKILDTPSLLAEGSKGLK-------KNIFKQKPPEADAAASGCC 441
            IWDTAGQE FR++T SYYRGA G ++VYD+TRRDTF +L+  W ++   +S N + + +L+GNK D ES R V K+EG  FARE+G +F+E SAKT  NV++ F    +E+  KI +    +   + G+K        N           A  GCC
Sbjct:   59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHS-NSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHGATNATHAGNQGGQQAGGGCC 212          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.887e-25
Identity = 67/156 (42.95%), Postives = 93/156 (59.62%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF----EELVLKILDTPSLLAEGSKGLK-------KNIFKQKPPEADAAASGCC 441
            IWDTAGQE FR++T SYYRGA G ++VYD+TRRDTF +L+  W ++   +S N + + +L+GNK D ES R V K+EG  FARE+G +F+E SAKT  NV++ F    +E+  KI +    +   + G+K        N           A  GCC
Sbjct:   59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHS-NSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNATHAGNQGGQQAGGGCC 212          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.887e-25
Identity = 67/156 (42.95%), Postives = 93/156 (59.62%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF----EELVLKILDTPSLLAEGSKGLK-------KNIFKQKPPEADAAASGCC 441
            IWDTAGQE FR++T SYYRGA G ++VYD+TRRDTF +L+  W ++   +S N + + +L+GNK D ES R V K+EG  FARE+G +F+E SAKT  NV++ F    +E+  KI +    +   + G+K        N           A  GCC
Sbjct:   59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHS-NSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNATHAGNQGGQQAGGGCC 212          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.887e-25
Identity = 67/156 (42.95%), Postives = 93/156 (59.62%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF----EELVLKILDTPSLLAEGSKGLK-------KNIFKQKPPEADAAASGCC 441
            IWDTAGQE FR++T SYYRGA G ++VYD+TRRDTF +L+  W ++   +S N + + +L+GNK D ES R V K+EG  FARE+G +F+E SAKT  NV++ F    +E+  KI +    +   + G+K        N           A  GCC
Sbjct:   59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHS-NSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNATHAGNQGGQQAGGGCC 212          
The following BLAST results are available for this feature:
BLAST of CK932608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 477
Match NameE-valueIdentityDescription
RAB18_CAEBR2.718e-3259.32Ras-related protein Rab-18 OS=Caenorhabditis brigg... [more]
RAB18_DICDI3.550e-3256.52Ras-related protein Rab-18 OS=Dictyostelium discoi... [more]
RAB1D_DICDI1.543e-2747.22Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RAB2_LYMST1.106e-2547.69Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RAB2A_MOUSE1.445e-2542.95Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]
RAB1_DISOM1.445e-2545.52Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RAB2A_RABIT1.887e-2542.95Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB2A_PONAB1.887e-2542.95Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MACFA1.887e-2542.95Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]
RAB2A_HUMAN1.887e-2542.95Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_G12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932608 ID=CK932608; Name=CK932608; organism=Citrus sinensis; type=EST; length=778bp
GGGGCAATTTGGGATACAGCTGGTCAGGAGAGATTTCGGACATTGACTAG
TTCATACTACAGGGGTGCACAAGGCATCATTATGGTTTATGATGTTACAA
GGCGAGACACATTTACTAATCTTTCTGATGTATGGGCTAAGGAAATTGAC
TTATACTCAACAAACCAAGATTGTATCAAATTGCTCGTTGGAAACAAAGT
TGATAAGGAAAGTGAAAGGGTTGTGACAAAGAAAGAGGGCATAAACTTTG
CGAGGGAATATGGATGCCTTTTTATTGAATGCAGTGCTAAAACTCGTGTC
AACGTACAGCAGTGCTTTGAAGAGCTTGTTCTAAAGATTTTAGATACACC
AAGCCTCTTGGCGGAGGGATCCAAAGGTTTGAAGAAGAACATCTTTAAAC
AGAAGCCACCAGAAGCTGATGCAGCTGCAAGCGGTTGTTGCTGATTCTTA
TTACTTGCTGAATTTCCCTCACATCACGTCCTACCCTCTAACTTAAGTGT
GGTCTTTCCTCTTTTAATCCCAAAGAAATTATTTATTTTATTATAGTTTA
TTATGAACTGCAGTGCTGATTACATGTAATATAGTAATGCTGTGATTCAT
GCTGCCTCTCCAGACTCATTTTGTCGACATTGAACAACATTTCATTCCTT
TTTTCAAGTCTTGAAATAGTCACTGATATGGCCGTACAGATTTGATCTCC
ATTTGCTCTTAAATCTTACAATGGTAATAGAGGTGAATTTGAGTGAGGTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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