CK932608

Overview
NameCK932608
Unique NameCK932608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4140 contig Csv1_Contig4140:229..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.887e-25
Identity = 65/154 (42.21%), Postives = 90/154 (58.44%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIF---------KQKPPEADAAASGCC 441
            IWDTAGQE FR++T SYYRG+ G ++VYD+TRRDTF +L+  W K+   Y+ N +   +L+GNK D ES+R V+ +EG  FA E G +F+E SAKT  NV++ F     KI +    + +G   +    F         KQ   +   A  GCC
Sbjct:   58 IWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLT-CWLKDARSYA-NSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIYEK---IQKGDFDINNESFGIKLGAPTSKQDGTDQKPAGGGCC 206          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.887e-25
Identity = 67/156 (42.95%), Postives = 93/156 (59.62%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF----EELVLKILDTPSLLAEGSKGLK-------KNIFKQKPPEADAAASGCC 441
            IWDTAGQE FR++T SYYRGA G ++VYD+TRRDTF +L+  W ++   +S N + + +L+GNK D ES R V K+EG  FARE+G +F+E SAKT  NV++ F    +E+  KI +    +   + G+K        N           A  GCC
Sbjct:   59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHS-NSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNATHAGNQGGQQAGGGCC 212          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.464e-25
Identity = 67/156 (42.95%), Postives = 93/156 (59.62%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF----EELVLKILDTPSLLAEGSKGLK-------KNIFKQKPPEADAAASGCC 441
            IWDTAGQE FR++T SYYRGA G ++VYD+TRRDTF +L+  W ++   +S N + + +L+GNK D ES R V K+EG  FARE+G +F+E SAKT  NV++ F    +E+  KI +    +   + G+K        N           A  GCC
Sbjct:   59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHS-NSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNASHGGNQGGQQAGGGCC 212          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.464e-25
Identity = 67/156 (42.95%), Postives = 93/156 (59.62%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF----EELVLKILDTPSLLAEGSKGLK-------KNIFKQKPPEADAAASGCC 441
            IWDTAGQE FR++T SYYRGA G ++VYD+TRRDTF +L+  W ++   +S N + + +L+GNK D ES R V K+EG  FARE+G +F+E SAKT  NV++ F    +E+  KI +    +   + G+K        N           A  GCC
Sbjct:   59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHS-NSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNATLAGNQGGQQAGGGCC 212          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB3A_RAT (Ras-related protein Rab-3A OS=Rattus norvegicus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.218e-25
Identity = 66/147 (44.90%), Postives = 87/147 (59.18%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI-------LDTPSLLAEGSKGLKKNIFKQKPPEADAA 426
            IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D W+ +I  YS +   + LLVGNK D E ERVV+ + G   A   G  F E SAK  +NV+Q FE LV  I       LDT      G+K   +   +Q PP  D A
Sbjct:   75 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQV-LLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLTDQQAPPHQDCA 219          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB3A_PIG (Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.218e-25
Identity = 66/147 (44.90%), Postives = 87/147 (59.18%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI-------LDTPSLLAEGSKGLKKNIFKQKPPEADAA 426
            IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D W+ +I  YS +   + LLVGNK D E ERVV+ + G   A   G  F E SAK  +NV+Q FE LV  I       LDT      G+K   +   +Q PP  D A
Sbjct:   75 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQV-LLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLTDQQAPPHQDCA 219          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB3A_MOUSE (Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.218e-25
Identity = 66/147 (44.90%), Postives = 87/147 (59.18%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI-------LDTPSLLAEGSKGLKKNIFKQKPPEADAA 426
            IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D W+ +I  YS +   + LLVGNK D E ERVV+ + G   A   G  F E SAK  +NV+Q FE LV  I       LDT      G+K   +   +Q PP  D A
Sbjct:   75 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQV-LLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLTDQQAPPHQDCA 219          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB3A_BOVIN (Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 3.218e-25
Identity = 66/147 (44.90%), Postives = 87/147 (59.18%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI-------LDTPSLLAEGSKGLKKNIFKQKPPEADAA 426
            IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D W+ +I  YS +   + LLVGNK D E ERVV+ + G   A   G  F E SAK  +NV+Q FE LV  I       LDT      G+K   +   +Q PP  D A
Sbjct:   75 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQV-LLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLTDQQAPPHQDCA 219          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 3.218e-25
Identity = 66/145 (45.52%), Postives = 86/145 (59.31%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 441
            IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y+ +++  KLLVGNK D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I       A      K N+  Q  P    +  GCC
Sbjct:   64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP-VKQSGGGCC 205          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 3.218e-25
Identity = 66/145 (45.52%), Postives = 86/145 (59.31%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 441
            IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y+ +++  KLLVGNK D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I       A      K N+  Q  P    +  GCC
Sbjct:   64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP-VKQSGGGCC 205          
The following BLAST results are available for this feature:
BLAST of CK932608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 477
Match NameE-valueIdentityDescription
RAB2A_DICDI1.887e-2542.21Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]
RAB2A_CANFA1.887e-2542.95Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
RAB2A_RAT2.464e-2542.95Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]
RAB2A_CHICK2.464e-2542.95Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB3A_RAT3.218e-2544.90Ras-related protein Rab-3A OS=Rattus norvegicus GN... [more]
RAB3A_PIG3.218e-2544.90Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A ... [more]
RAB3A_MOUSE3.218e-2544.90Ras-related protein Rab-3A OS=Mus musculus GN=Rab3... [more]
RAB3A_BOVIN3.218e-2544.90Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A ... [more]
RAB1A_RAT3.218e-2545.52Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_MOUSE3.218e-2545.52Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_G12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932608 ID=CK932608; Name=CK932608; organism=Citrus sinensis; type=EST; length=778bp
GGGGCAATTTGGGATACAGCTGGTCAGGAGAGATTTCGGACATTGACTAG
TTCATACTACAGGGGTGCACAAGGCATCATTATGGTTTATGATGTTACAA
GGCGAGACACATTTACTAATCTTTCTGATGTATGGGCTAAGGAAATTGAC
TTATACTCAACAAACCAAGATTGTATCAAATTGCTCGTTGGAAACAAAGT
TGATAAGGAAAGTGAAAGGGTTGTGACAAAGAAAGAGGGCATAAACTTTG
CGAGGGAATATGGATGCCTTTTTATTGAATGCAGTGCTAAAACTCGTGTC
AACGTACAGCAGTGCTTTGAAGAGCTTGTTCTAAAGATTTTAGATACACC
AAGCCTCTTGGCGGAGGGATCCAAAGGTTTGAAGAAGAACATCTTTAAAC
AGAAGCCACCAGAAGCTGATGCAGCTGCAAGCGGTTGTTGCTGATTCTTA
TTACTTGCTGAATTTCCCTCACATCACGTCCTACCCTCTAACTTAAGTGT
GGTCTTTCCTCTTTTAATCCCAAAGAAATTATTTATTTTATTATAGTTTA
TTATGAACTGCAGTGCTGATTACATGTAATATAGTAATGCTGTGATTCAT
GCTGCCTCTCCAGACTCATTTTGTCGACATTGAACAACATTTCATTCCTT
TTTTCAAGTCTTGAAATAGTCACTGATATGGCCGTACAGATTTGATCTCC
ATTTGCTCTTAAATCTTACAATGGTAATAGAGGTGAATTTGAGTGAGGTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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