CK932608

Overview
NameCK932608
Unique NameCK932608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4140 contig Csv1_Contig4140:229..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.086e-24
Identity = 66/145 (45.52%), Postives = 89/145 (61.38%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 441
            IWDTAGQERFRT+TSSYYRGA GII+VYDVT ++++ N+   W +EID Y+ +++  KLLVGNK D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I       A  S G + N+     P   +A+ GCC
Sbjct:   61 IWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYA-SENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGA-ASGGERPNLKIDSTP-VKSASGGCC 201          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.086e-24
Identity = 62/138 (44.93%), Postives = 85/138 (61.59%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEAD 420
            +WDTAGQERF+T+T++YYRGA GII+VYD+T   +F N+ + W K I   + +    +LL+GNK D E++R V K++    ARE+G  F E SAK+ +NV + F  L   I     LL  G + LK N    KPP  D
Sbjct:   61 VWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQN-WMKSIK-ENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI-----LLKSGGRRLKNN---NKPPSTD 188          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.724e-24
Identity = 67/156 (42.95%), Postives = 95/156 (60.90%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF----EELVLKILDTPSLLAEGSKGLK-----KNIFKQ--KPPEADAAASGCC 441
            IWDTAGQE FR++T SYYRGA G ++VYD+TRR+TF +L+  W ++   ++ N +   +L+GNK D    R VT +EG  FA+E+G +F+E SA+T  NV++ F    +E+  KI D    ++  S G+K      N   Q  KP E  AA S  C
Sbjct:   59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHA-NPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGGGNAGPQTVKPGEGGAAKSSSC 212          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.724e-24
Identity = 64/149 (42.95%), Postives = 91/149 (61.07%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAE-----GSKGLKKNIFKQKPPEADAAASGC 438
            IWDTAGQER+RT+T++YYRGA G +++YD+  +++FT + D WA +I  YS +   + +LVGNK D E ERVV+ ++G   A + G  F E SAK  +NV+Q FE LV  I D  +   E     GS G    +    PP+   ++ GC
Sbjct:   75 IWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQD-WATQIKTYSWDNAQV-ILVGNKCDLEDERVVSAEDGQRLAGDLGFEFFEASAKENINVKQVFERLVDIICDKMNESLEPSSSPGSNGKGPALGDTPPPQ--PSSCGC 219          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.724e-24
Identity = 66/145 (45.52%), Postives = 88/145 (60.69%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 441
            IWDTAGQERFRT+TSSYYRGA GII+VYDVT ++++ N+   W +EID Y+ +++  KLLVGNK D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I       A  S G + N+     P    A+ GCC
Sbjct:   61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYA-SENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGA-ASGGERPNLKIDSTP-VKPASGGCC 201          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.724e-24
Identity = 63/145 (43.45%), Postives = 87/145 (60.00%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 441
            IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y+ +++  KLLVGNK D  +++VV       +A + G  F+E SAK   NV+Q F  +  +I +    +   S   K ++         A   GCC
Sbjct:   64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEIKNRMGPITAASDS-KPSVKINSSTPVSANKGGCC 205          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.724e-24
Identity = 59/111 (53.15%), Postives = 74/111 (66.67%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 339
            IWDTAGQERFR +T SYYRGA G +MVYD+TRR T+ +LS       +L  TN + + +L+GNK D E++R VT +E   FA E G LF+E SAKT  NV+  F E   KI
Sbjct:   64 IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.724e-24
Identity = 59/111 (53.15%), Postives = 74/111 (66.67%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 339
            IWDTAGQERFR +T SYYRGA G +MVYD+TRR T+ +LS       +L  TN + + +L+GNK D E++R VT +E   FA E G LF+E SAKT  NV+  F E   KI
Sbjct:   64 IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB14_PIG (Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.724e-24
Identity = 59/111 (53.15%), Postives = 74/111 (66.67%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 339
            IWDTAGQERFR +T SYYRGA G +MVYD+TRR T+ +LS       +L  TN + + +L+GNK D E++R VT +E   FA E G LF+E SAKT  NV+  F E   KI
Sbjct:   64 IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB14_MOUSE (Ras-related protein Rab-14 OS=Mus musculus GN=Rab14 PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.724e-24
Identity = 59/111 (53.15%), Postives = 74/111 (66.67%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 339
            IWDTAGQERFR +T SYYRGA G +MVYD+TRR T+ +LS       +L  TN + + +L+GNK D E++R VT +E   FA E G LF+E SAKT  NV+  F E   KI
Sbjct:   64 IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
The following BLAST results are available for this feature:
BLAST of CK932608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 477
Match NameE-valueIdentityDescription
RAB1B_RAT2.086e-2445.52Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]
RAB13_BOVIN2.086e-2444.93Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
YPTC4_CHLRE2.724e-2442.95GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
RAB3D_RAT2.724e-2442.95GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]
RAB1B_MOUSE2.724e-2445.52Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]
RAB1A_LYMST2.724e-2443.45Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
RAB14_RAT2.724e-2453.15Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]
RAB14_PONAB2.724e-2453.15Ras-related protein Rab-14 OS=Pongo abelii GN=RAB1... [more]
RAB14_PIG2.724e-2453.15Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 ... [more]
RAB14_MOUSE2.724e-2453.15Ras-related protein Rab-14 OS=Mus musculus GN=Rab1... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_G12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932608 ID=CK932608; Name=CK932608; organism=Citrus sinensis; type=EST; length=778bp
GGGGCAATTTGGGATACAGCTGGTCAGGAGAGATTTCGGACATTGACTAG
TTCATACTACAGGGGTGCACAAGGCATCATTATGGTTTATGATGTTACAA
GGCGAGACACATTTACTAATCTTTCTGATGTATGGGCTAAGGAAATTGAC
TTATACTCAACAAACCAAGATTGTATCAAATTGCTCGTTGGAAACAAAGT
TGATAAGGAAAGTGAAAGGGTTGTGACAAAGAAAGAGGGCATAAACTTTG
CGAGGGAATATGGATGCCTTTTTATTGAATGCAGTGCTAAAACTCGTGTC
AACGTACAGCAGTGCTTTGAAGAGCTTGTTCTAAAGATTTTAGATACACC
AAGCCTCTTGGCGGAGGGATCCAAAGGTTTGAAGAAGAACATCTTTAAAC
AGAAGCCACCAGAAGCTGATGCAGCTGCAAGCGGTTGTTGCTGATTCTTA
TTACTTGCTGAATTTCCCTCACATCACGTCCTACCCTCTAACTTAAGTGT
GGTCTTTCCTCTTTTAATCCCAAAGAAATTATTTATTTTATTATAGTTTA
TTATGAACTGCAGTGCTGATTACATGTAATATAGTAATGCTGTGATTCAT
GCTGCCTCTCCAGACTCATTTTGTCGACATTGAACAACATTTCATTCCTT
TTTTCAAGTCTTGAAATAGTCACTGATATGGCCGTACAGATTTGATCTCC
ATTTGCTCTTAAATCTTACAATGGTAATAGAGGTGAATTTGAGTGAGGTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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