CK932608

Overview
NameCK932608
Unique NameCK932608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4140 contig Csv1_Contig4140:229..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB14_HUMAN (Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4)

HSP 1 Score: 112.464 bits (280), Expect = 2.724e-24
Identity = 59/111 (53.15%), Postives = 74/111 (66.67%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 339
            IWDTAGQERFR +T SYYRGA G +MVYD+TRR T+ +LS       +L  TN + + +L+GNK D E++R VT +E   FA E G LF+E SAKT  NV+  F E   KI
Sbjct:   64 IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB14_CHICK (Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.724e-24
Identity = 59/111 (53.15%), Postives = 74/111 (66.67%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 339
            IWDTAGQERFR +T SYYRGA G +MVYD+TRR T+ +LS       +L  TN + + +L+GNK D E++R VT +E   FA E G LF+E SAKT  NV+  F E   KI
Sbjct:   64 IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.558e-24
Identity = 65/145 (44.83%), Postives = 88/145 (60.69%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 441
            IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W  EID Y+ +++  KLLVGNK D    RVV+ + G   A E G  F+E SAK   NV++ F  +  +I +   + ++ +    K    Q   +  A  S CC
Sbjct:   61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYA-SENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKN--RMASQPATNASKPATVQMRGQPVAQQSSCC 201          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.558e-24
Identity = 66/145 (45.52%), Postives = 87/145 (60.00%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 441
            IWDTAGQERFRT+TSSYYRGA GII+VYDVT ++++ N+   W +EID Y+ +++  KLLVGNK D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I       A  S G + N+     P    A  GCC
Sbjct:   61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYA-SENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGA-ASGGERPNLKIDSTP-VKPAGGGCC 201          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.558e-24
Identity = 66/145 (45.52%), Postives = 87/145 (60.00%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 441
            IWDTAGQERFRT+TSSYYRGA GII+VYDVT ++++ N+   W +EID Y+ +++  KLLVGNK D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I       A  S G + N+     P    A  GCC
Sbjct:   61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYA-SENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGA-ASGGERPNLKIDSTP-VKPAGGGCC 201          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.558e-24
Identity = 66/145 (45.52%), Postives = 87/145 (60.00%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 441
            IWDTAGQERFRT+TSSYYRGA GII+VYDVT ++++ N+   W +EID Y+ +++  KLLVGNK D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I       A  S G + N+     P    A  GCC
Sbjct:   61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYA-SENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGA-ASGGERPNLKIDSTP-VKQAGGGCC 201          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.647e-24
Identity = 66/160 (41.25%), Postives = 98/160 (61.25%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF----EELVLKILDTPSLLAEGSKGLK----KNIFKQKPPEAD-------AAASGCC 441
            IWDTAGQE FR++T SYYRGA G ++VYD+TRR+TF +L+  W ++   +S++ + + +L+GNK D ES R V ++EG  FARE+G +F+E SAKT  NV++ F    +E+  KI      +   + G+K    ++I     P A         + SGCC
Sbjct:   59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTS-WLEDARQHSSS-NMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLFDVHNEANGIKIGPQQSISTSVGPSASQRNSRDIGSNSGCC 216          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB3D_MOUSE (Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.069e-24
Identity = 62/146 (42.47%), Postives = 88/146 (60.27%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAE-----GSKGLKKNIFKQKPPEADAAA 429
            IWDTAGQER+RT+T++YYRGA G +++YD+  +++FT + D WA +I  YS +   + +LVGNK D E ERVV  ++G   A + G  F E SAK  +NV+Q FE LV  I D  +   E     GS G    +    PP+  + +
Sbjct:   75 IWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQD-WATQIKTYSWDNAQV-ILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDIICDKMNESLEPSSSPGSNGKGPALGDTPPPQPSSCS 218          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 7.927e-24
Identity = 64/145 (44.14%), Postives = 84/145 (57.93%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 441
            IWDTAGQERFRT+TSSYYRGA GII+VYDVT  ++F N+   W  EID Y+++ +  KLLVGNK D    R +  +    FA E G  F+E SAK   NV+Q F  +   I +  +    G+      +  +  P A    +GCC
Sbjct:   61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQ-WLSEIDRYASD-NVNKLLVGNKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGNNARPPTVQIRGQPVAQ--KNGCC 201          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB3C_BOVIN (Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 7.927e-24
Identity = 61/147 (41.50%), Postives = 87/147 (59.18%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGL---KKNIFKQKPPEADAAASGC 438
            IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D W+ +I  YS +   + +LVGNK D E ERV++ + G +   + G  F E SAK  +NV+Q FE LV  I D  S   E    +   K+N   ++ P       GC
Sbjct:   83 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQV-ILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQNTRLKETPPPPQPNCGC 227          
The following BLAST results are available for this feature:
BLAST of CK932608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 477
Match NameE-valueIdentityDescription
RAB14_HUMAN2.724e-2453.15Ras-related protein Rab-14 OS=Homo sapiens GN=RAB1... [more]
RAB14_CHICK2.724e-2453.15Ras-related protein Rab-14 OS=Gallus gallus GN=RAB... [more]
RIC1_ORYSJ3.558e-2444.83Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RAB1B_PONAB3.558e-2445.52Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1... [more]
RAB1B_HUMAN3.558e-2445.52Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
RAB1B_BOVIN3.558e-2445.52Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]
RAB2B_HUMAN4.647e-2441.25Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RAB3D_MOUSE6.069e-2442.47Ras-related protein Rab-3D OS=Mus musculus GN=Rab3... [more]
RBD2A_ARATH7.927e-2444.14Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
RAB3C_BOVIN7.927e-2441.50Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_G12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932608 ID=CK932608; Name=CK932608; organism=Citrus sinensis; type=EST; length=778bp
GGGGCAATTTGGGATACAGCTGGTCAGGAGAGATTTCGGACATTGACTAG
TTCATACTACAGGGGTGCACAAGGCATCATTATGGTTTATGATGTTACAA
GGCGAGACACATTTACTAATCTTTCTGATGTATGGGCTAAGGAAATTGAC
TTATACTCAACAAACCAAGATTGTATCAAATTGCTCGTTGGAAACAAAGT
TGATAAGGAAAGTGAAAGGGTTGTGACAAAGAAAGAGGGCATAAACTTTG
CGAGGGAATATGGATGCCTTTTTATTGAATGCAGTGCTAAAACTCGTGTC
AACGTACAGCAGTGCTTTGAAGAGCTTGTTCTAAAGATTTTAGATACACC
AAGCCTCTTGGCGGAGGGATCCAAAGGTTTGAAGAAGAACATCTTTAAAC
AGAAGCCACCAGAAGCTGATGCAGCTGCAAGCGGTTGTTGCTGATTCTTA
TTACTTGCTGAATTTCCCTCACATCACGTCCTACCCTCTAACTTAAGTGT
GGTCTTTCCTCTTTTAATCCCAAAGAAATTATTTATTTTATTATAGTTTA
TTATGAACTGCAGTGCTGATTACATGTAATATAGTAATGCTGTGATTCAT
GCTGCCTCTCCAGACTCATTTTGTCGACATTGAACAACATTTCATTCCTT
TTTTCAAGTCTTGAAATAGTCACTGATATGGCCGTACAGATTTGATCTCC
ATTTGCTCTTAAATCTTACAATGGTAATAGAGGTGAATTTGAGTGAGGTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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