CK932608

Overview
NameCK932608
Unique NameCK932608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4140 contig Csv1_Contig4140:229..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB3B_HUMAN (Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3B PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.306e-23
Identity = 57/116 (49.14%), Postives = 77/116 (66.38%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 354
            IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D WA +I  YS +   + +LVGNK D E ERVV  ++G   A + G  F E SAK  ++V+Q FE LV  I D  S
Sbjct:   75 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WATQIKTYSWDNAQV-ILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 188          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB3B_BOVIN (Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.306e-23
Identity = 57/116 (49.14%), Postives = 77/116 (66.38%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 354
            IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D WA +I  YS +   + +LVGNK D E ERVV  ++G   A + G  F E SAK  ++V+Q FE LV  I D  S
Sbjct:   75 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WATQIKTYSWDNAQV-ILVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 188          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB3B_RAT (Ras-related protein Rab-3B OS=Rattus norvegicus GN=Rab3b PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.012e-23
Identity = 56/116 (48.28%), Postives = 77/116 (66.38%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 354
            IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D WA +I  YS +   + +LVGNK D E ERV+  ++G   A + G  F E SAK  ++V+Q FE LV  I D  S
Sbjct:   75 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WATQIKTYSWDNAQV-ILVGNKCDMEEERVIPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 188          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: SEC4_YEAST (Ras-related protein SEC4 OS=Saccharomyces cerevisiae GN=SEC4 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.934e-23
Identity = 67/148 (45.27%), Postives = 93/148 (62.84%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF---EELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 441
            +WDTAGQERFRT+T++YYRGA GII+VYDVT   TFTN+   W K ++ ++ N +   LLVGNK D E+ RVVT  +G   A+E G  FIE SAK   NV + F    +L+ + +D+  L+  G+ G + NI        +++ S CC
Sbjct:   73 LWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGN-GKEGNI-SINSGSGNSSKSNCC 215          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.934e-23
Identity = 64/154 (41.56%), Postives = 94/154 (61.04%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE----LVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAAS-----GCC 441
            IWDTAGQE FR++T SYYRGA G ++VYD+TRR+TF +L+  W ++   ++ N +   +LVGNK D    R V+ +EG  FA+E+G +F+E SAKT  NV++ F +    +  KI D    ++  S G+K  +    P ++  A S     GCC
Sbjct:   59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHA-NANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSNESYGIK--VGYVVPGQSGGAGSSSQGGGCC 208          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.934e-23
Identity = 65/145 (44.83%), Postives = 86/145 (59.31%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 441
            IWDTAGQER RT+TSSYYRGA GII+VYDVT ++++ N+   W +EID Y+ +++  KLLVGNK D  +++VV       FA   G  F+E SAK   NV+Q F  +  +I       A  S G + N+     P    A  GCC
Sbjct:   61 IWDTAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYA-SENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGA-ASGGERPNLKIDSTP-VKQAGGGCC 201          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.138e-23
Identity = 64/155 (41.29%), Postives = 94/155 (60.65%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE----LVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAAS------GCC 441
            IWDTAGQE FR++T SYYRGA G ++VYD+TRR+TF +L+  W ++   ++ N +   +LVGNK D    R V+ +EG  FA+E+G +F+E SAKT  NV++ F +    +  KI D    ++  S G+K  +    P ++  A S      GCC
Sbjct:   59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHA-NANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSNESYGIK--VGYAIPGQSGGAGSSSSQGGGCC 209          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: RAB12_MOUSE (Ras-related protein Rab-12 OS=Mus musculus GN=Rab12 PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 5.138e-23
Identity = 57/113 (50.44%), Postives = 82/113 (72.57%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEELVLKIL 342
            IWDTAGQERF ++TS+YYR A+GII+VYD+T+++TF +L   W K ID Y+ ++D   LLVGNK+D E++R +++++G  FA++  G  F E SAK   NV + F +LV  IL
Sbjct:   94 IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYA-SEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 204          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.711e-23
Identity = 56/104 (53.85%), Postives = 69/104 (66.35%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 318
            IWDTAGQERFRT+TSSYYRGA GII+VYD+T  ++F N+   W  EID Y+ N    KLLVGNK D    R V       +A+E G  F+E SAK  +NV++ F
Sbjct:   61 IWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQ-WLDEIDRYA-NDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAF 162          
BLAST of CK932608 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.711e-23
Identity = 65/146 (44.52%), Postives = 86/146 (58.90%), Query Frame = 1
Query:    7 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD-TPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 441
            IWDTAGQERFRT+TSSYYRGA GI +VYDVT  D+F N+   W +EID Y+T +   KLLVGNK D   ++VV       FA   G  F+E SAK   NV+Q F  +  +I +   S +A  +     N+       ++ ++ GCC
Sbjct:   61 IWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQ-WLQEIDRYAT-EGVNKLLVGNKSDMTDKKVVEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMARQIKERMGSSIATNNTKASVNV-SPGHGVSNNSSGGCC 203          
The following BLAST results are available for this feature:
BLAST of CK932608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 477
Match NameE-valueIdentityDescription
RAB3B_HUMAN2.306e-2349.14Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3... [more]
RAB3B_BOVIN2.306e-2349.14Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B ... [more]
RAB3B_RAT3.012e-2348.28Ras-related protein Rab-3B OS=Rattus norvegicus GN... [more]
SEC4_YEAST3.934e-2345.27Ras-related protein SEC4 OS=Saccharomyces cerevisi... [more]
RAB2A_MAIZE3.934e-2341.56Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]
RAB1B_PIG3.934e-2344.83Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]
RAB2B_MAIZE5.138e-2341.29Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]
RAB12_MOUSE5.138e-2350.44Ras-related protein Rab-12 OS=Mus musculus GN=Rab1... [more]
YPTM1_MAIZE6.711e-2353.85GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
YPT1_NEUCR6.711e-2344.52GTP-binding protein ypt1 OS=Neurospora crassa GN=y... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_G12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932608 ID=CK932608; Name=CK932608; organism=Citrus sinensis; type=EST; length=778bp
GGGGCAATTTGGGATACAGCTGGTCAGGAGAGATTTCGGACATTGACTAG
TTCATACTACAGGGGTGCACAAGGCATCATTATGGTTTATGATGTTACAA
GGCGAGACACATTTACTAATCTTTCTGATGTATGGGCTAAGGAAATTGAC
TTATACTCAACAAACCAAGATTGTATCAAATTGCTCGTTGGAAACAAAGT
TGATAAGGAAAGTGAAAGGGTTGTGACAAAGAAAGAGGGCATAAACTTTG
CGAGGGAATATGGATGCCTTTTTATTGAATGCAGTGCTAAAACTCGTGTC
AACGTACAGCAGTGCTTTGAAGAGCTTGTTCTAAAGATTTTAGATACACC
AAGCCTCTTGGCGGAGGGATCCAAAGGTTTGAAGAAGAACATCTTTAAAC
AGAAGCCACCAGAAGCTGATGCAGCTGCAAGCGGTTGTTGCTGATTCTTA
TTACTTGCTGAATTTCCCTCACATCACGTCCTACCCTCTAACTTAAGTGT
GGTCTTTCCTCTTTTAATCCCAAAGAAATTATTTATTTTATTATAGTTTA
TTATGAACTGCAGTGCTGATTACATGTAATATAGTAATGCTGTGATTCAT
GCTGCCTCTCCAGACTCATTTTGTCGACATTGAACAACATTTCATTCCTT
TTTTCAAGTCTTGAAATAGTCACTGATATGGCCGTACAGATTTGATCTCC
ATTTGCTCTTAAATCTTACAATGGTAATAGAGGTGAATTTGAGTGAGGTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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