CK933020

Overview
NameCK933020
Unique NameCK933020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933020_ssr80 microsatellite CK933020_ssr80:80..97. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933020_ssr70 microsatellite CK933020_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10798 contig Csv1_Contig10798:1..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PAL2_LITER (Phenylalanine ammonia-lyase 2 OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 1.108e-87
Identity = 164/203 (80.79%), Postives = 178/203 (87.68%), Query Frame = 1
Query:  214 NDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT--SSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            N    +   D LNWG+ AE++KGSHL+EVK+MVAE+RKPVV L G+TLT+AQVAAIA       VEL+E+AREGV ASS+WVMESMNKGTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFGNGTE+SHTLPHS TRAAMLVR+NTLLQGYSGIRFEILEAITK LN NITPCLPLRGTITASGDLVPLSYIA  LTG
Sbjct:    5 NGKMEFCMKDPLNWGMAAESMKGSHLDEVKKMVAEFRKPVVQLAGKTLTIAQVAAIAARDDGVTVELAEAAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTETSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKFLNTNITPCLPLRGTITASGDLVPLSYIAGLLTG 207          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PAL1_DAUCA (Phenylalanine ammonia-lyase 1 OS=Daucus carota GN=PAL1 PE=3 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 1.108e-87
Identity = 166/208 (79.81%), Postives = 179/208 (86.06%), Query Frame = 1
Query:  208 CKNDNYNYSSG-----DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            C+N N    +G     D LNWG+ AE L GSHL+EVKRMVAE+RKP+V LGGETLTV+QVAAIA  S  VEL+ESAR GV ASS+WVMESMNKGTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFG+G +SS+ LPHS TRAAMLVR+NTLLQGYSGIRFEILEAITK LN NITPCLPLRGTITASGDLVPLSYIA  LTG
Sbjct:    3 CENKNVVLGNGLCMQKDPLNWGMAAEALTGSHLDEVKRMVAEFRKPMVQLGGETLTVSQVAAIAAGSVKVELAESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGNDSSNILPHSATRAAMLVRINTLLQGYSGIRFEILEAITKFLNQNITPCLPLRGTITASGDLVPLSYIAGLLTG 210          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PAL2_PEA (Phenylalanine ammonia-lyase 2 OS=Pisum sativum GN=PAL2 PE=2 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 3.224e-87
Identity = 171/224 (76.34%), Postives = 186/224 (83.04%), Query Frame = 1
Query:  163 ATTENGHQNGGLEGLC----KNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSS--TNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            A T+N   N G +  C    KN+N   S  D LNWGV AE +KGSHL+EVKRMV EYRKPVV LGGETLT++QVAAIA       VELSESAR GV ASS+WVMESMNKGTDSYGVTT  GATSHRRTK GGALQKELIRFLNAGIFGNG+ES+HTLPH+ TRAAMLVR+NTLLQGYSGIRFEILEAITKL+N+N+TPCL LRGTITASGDLVPLSYIA  LTG
Sbjct:    7 AITKN---NSGYDSFCLTNAKNNNIKVSDSDPLNWGVAAEAMKGSHLDEVKRMVDEYRKPVVRLGGETLTISQVAAIAAHDHGVKVELSESARAGVKASSDWVMESMNKGTDSYGVTTVHGATSHRRTKQGGALQKELIRFLNAGIFGNGSESTHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLINNNVTPCL-LRGTITASGDLVPLSYIAGLLTG 226          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PAL3_PETCR (Phenylalanine ammonia-lyase 3 OS=Petroselinum crispum GN=PAL3 PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 7.182e-87
Identity = 170/220 (77.27%), Postives = 181/220 (82.27%), Query Frame = 1
Query:  169 TENGHQNGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT---SSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTES-SHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            T NGH NG    LC          D LNWGV AE L GSHL+EVKRMVAEYRKPVV L GETLT++QVAAI+    S   VELSE AR GV ASS+WVM+SMNKGTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFG+G E+ ++TLPHS TRAAMLVR+NTLLQGYSGIRFEILEAITK LNHNITPCLPLRGTITASGDLVPLSYIA  LTG
Sbjct:    7 TTNGHANGNGLDLCMKKE------DPLNWGVAAEALTGSHLDEVKRMVAEYRKPVVKLEGETLTISQVAAISARDDSGVKVELSEEARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAEAGNNTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTG 220          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PALY_MEDSA (Phenylalanine ammonia-lyase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 9.380e-87
Identity = 166/219 (75.80%), Postives = 181/219 (82.65%), Query Frame = 1
Query:  166 TTENGHQNGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSS--TNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            T  N +++  L     N+N   +  D LNWGV AE +KGSHL+EVKRMVAEYRKPVV LGGETLT++QVAAIA       V+LSESAR+GV ASS WVMESMNKGTDSYGVTTGFGATSH RTK GGALQKELIRFLNAGIFGNGTES+HTLP + TRAAMLVR+NTLLQGYSGI FEILEAITK LN  +TPCLPLRGTITASGDLVPLSYIA  LTG
Sbjct:    9 TKNNANESFCLIHAKNNNNMKVNEADPLNWGVAAEAMKGSHLDEVKRMVAEYRKPVVRLGGETLTISQVAAIAAHDHGVQVDLSESARDGVKASSEWVMESMNKGTDSYGVTTGFGATSHSRTKQGGALQKELIRFLNAGIFGNGTESNHTLPKTATRAAMLVRINTLLQGYSGIDFEILEAITKPLNKTVTPCLPLRGTITASGDLVPLSYIAGLLTG 227          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PAL3_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 9.380e-87
Identity = 163/196 (83.16%), Postives = 176/196 (89.80%), Query Frame = 1
Query:  241 DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATS----STNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            D LNW + A++LKGSHL+EVK+MVAE+RKPVV LGGETLTVAQVAAIA      +  VELSE AR GV ASS+WVM+SM+KGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAG+FGNGTES HTLP S TRAAMLVR+NTLLQGYSGIRFEILEAITKLLNHN+TPCLPLRGTITASGDLVPLSYIA  LTG
Sbjct:   19 DPLNWEMAADSLKGSHLDEVKKMVAEFRKPVVKLGGETLTVAQVAAIAAKDNAKTVKVELSEGARAGVKASSDWVMDSMSKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGVFGNGTESCHTLPQSGTRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTG 214          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PAL2_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=PALA PE=2 SV=2)

HSP 1 Score: 319.701 bits (818), Expect = 1.225e-86
Identity = 163/196 (83.16%), Postives = 175/196 (89.29%), Query Frame = 1
Query:  241 DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATS----STNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            D LNW + A++LKGSHL+EVK+MVAE+RKPVV LGGETLTVAQVAAIA      +  VELSE AR GV ASS+WVM+SM KGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAG+FGNGTES HTLP S TRAAMLVR+NTLLQGYSGIRFEILEAITKLLNHN+TPCLPLRGTITASGDLVPLSYIA  LTG
Sbjct:   19 DPLNWEMAADSLKGSHLDEVKKMVAEFRKPVVKLGGETLTVAQVAAIAAKDNVKTVKVELSEGARAGVKASSDWVMDSMGKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGVFGNGTESCHTLPQSGTRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTG 214          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PAL1_IPOBA (Phenylalanine ammonia-lyase OS=Ipomoea batatas GN=PAL PE=2 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 1.225e-86
Identity = 163/194 (84.02%), Postives = 175/194 (90.21%), Query Frame = 1
Query:  241 DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT--SSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            D LNW + AE+L+GSHL+EVKRMVAE+RKP V LGGETLTVAQVA IA+  ++  VELSE AR GV ASS+WVM+SMNKGTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFGN TES HTLPHS TRAAMLVR+NTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIA  +TG
Sbjct:   15 DPLNWEMAAESLRGSHLDEVKRMVAEFRKPAVKLGGETLTVAQVARIASRDNAVAVELSEEARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNATESCHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLITG 208          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PALY_CITLI (Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL6 PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.729e-86
Identity = 171/229 (74.67%), Postives = 185/229 (80.79%), Query Frame = 1
Query:  151 MERGATTENG---HQNGGLE--GLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT--SSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            ME    T NG    +NGG    GLC       +  D LNW V A++LKGSHL+EVKRM+ EYR+PVV LGGE+LT+ QV AIA   S   VEL+E+AR GV ASS+WVM+SM KGTDSYGVTTGFGATSHRRTK GGALQKELIRFLN+GIFGNGTESSHTLPHS TRAAMLVRVNTLLQGYSGIRFEILE ITK LNHNITPCLPLRGTITASGDLVPLSYIA  LTG
Sbjct:    1 MELSHETCNGIKNDRNGGTSSLGLC-------TGTDPLNWTVAADSLKGSHLDEVKRMIDEYRRPVVKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTG 222          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PAL2_POPKI (Phenylalanine ammonia-lyase G2B OS=Populus kitakamiensis GN=PALG2B PE=3 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 3.564e-86
Identity = 160/203 (78.82%), Postives = 176/203 (86.70%), Query Frame = 1
Query:  214 NDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSSTNV--ELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            N +  +++ D LNWG+ AE+LKGSHL+EVKRM+ EYR PVV LGGETLT+ QV AIA+    V  ELSE AR GV ASS+WVM+SM+KGTDSYGVTTGFGATSHRRTK GG LQKELIRFLNAGIFGNGTESSHTLP S TRAAMLVR NTLLQGYSGIRFE+LEAITK++NHNITPCLPLRGTITASGDLVPLSYIA  LTG
Sbjct:   11 NGSPGFNTNDPLNWGMAAESLKGSHLDEVKRMIEEYRNPVVKLGGETLTIGQVTAIASRDVGVMVELSEEARAGVKASSDWVMDSMSKGTDSYGVTTGFGATSHRRTKQGGELQKELIRFLNAGIFGNGTESSHTLPRSATRAAMLVRTNTLLQGYSGIRFEMLEAITKMINHNITPCLPLRGTITASGDLVPLSYIAGLLTG 213          
The following BLAST results are available for this feature:
BLAST of CK933020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
PAL2_LITER1.108e-8780.79Phenylalanine ammonia-lyase 2 OS=Lithospermum eryt... [more]
PAL1_DAUCA1.108e-8779.81Phenylalanine ammonia-lyase 1 OS=Daucus carota GN=... [more]
PAL2_PEA3.224e-8776.34Phenylalanine ammonia-lyase 2 OS=Pisum sativum GN=... [more]
PAL3_PETCR7.182e-8777.27Phenylalanine ammonia-lyase 3 OS=Petroselinum cris... [more]
PALY_MEDSA9.380e-8775.80Phenylalanine ammonia-lyase OS=Medicago sativa PE=... [more]
PAL3_TOBAC9.380e-8783.16Phenylalanine ammonia-lyase OS=Nicotiana tabacum P... [more]
PAL2_TOBAC1.225e-8683.16Phenylalanine ammonia-lyase OS=Nicotiana tabacum G... [more]
PAL1_IPOBA1.225e-8684.02Phenylalanine ammonia-lyase OS=Ipomoea batatas GN=... [more]
PALY_CITLI2.729e-8674.67Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL... [more]
PAL2_POPKI3.564e-8678.82Phenylalanine ammonia-lyase G2B OS=Populus kitakam... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004348_E06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933020 ID=CK933020; Name=CK933020; organism=Citrus sinensis; type=EST; length=818bp
GCGGGGAGGAAATCCATTATATTTATAGANNNCAGAATTTCCTTTAGCTC
ATTCATTCTTCATCACTCCCATTCATTCATTCTTCTTCTTCTTCTTCTTT
CTACAGTTTTGGTATTTTTTGTAATTGCAGTAACATTTACGTAAAACGAT
ATGGAGAGAGGTGCCACTACTGAGAATGGTCACCAGAACGGTGGCCTGGA
GGGTTTGTGCAAGAATGACAATTACAATTACAGTTCTGGGGATGCGTTGA
ACTGGGGAGTGATGGCGGAGACGTTGAAGGGGAGCCATTTGGAGGAAGTG
AAGCGTATGGTGGCGGAGTACAGGAAGCCGGTGGTCAACCTCGGTGGTGA
GACGTTGACCGTAGCACAGGTGGCTGCCATTGCCACGTCCTCTACGAATG
TGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCTAGGCCAGCAGTAATTGG
GTGATGGAGAGCATGAATAAGGGTACCGACAGTTACGGCGTTACCACTGG
CTTTGGCGCCACTTCTCATCGGAGAACCAAGAACGGCGGTGCTCTTCAGA
AGGAGCTCATTAGATTTTTGAACGCTGGAATCTTTGGAAACGGAACAGAG
TCATCTCACACGCTACCTCACTCAACAACAAGGGCAGCCATGCTTGTGAG
GGTTAACACTCTTCTCCAGGGCTACTCTGGCATCCGATTTGAAATCCTGG
AAGCGATCACAAAGCTGCTCAATCACAACATCACTCCATGCCTCCCTCTT
CGCGGCACAATCACTGCTTCAGGGGATCTGGTTCCTCTTTCCTACATTGC
CNNNNTGCTCACCGGCCG
back to top