CK933020

Overview
NameCK933020
Unique NameCK933020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933020_ssr80 microsatellite CK933020_ssr80:80..97. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933020_ssr70 microsatellite CK933020_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10798 contig Csv1_Contig10798:1..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PAL1_ARATH (Phenylalanine ammonia-lyase 1 OS=Arabidopsis thaliana GN=PAL1 PE=1 SV=3)

HSP 1 Score: 317.775 bits (813), Expect = 4.655e-86
Identity = 171/226 (75.66%), Postives = 188/226 (83.19%), Query Frame = 1
Query:  160 GATTENGHQNGGLEG-LCKND----NYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT--SSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            GA   NG   GG++  LC  D    N   ++ D LNWG  AE +KGSHL+EVKRMVAE+RKPVVNLGGETLT+ QVAAI+T  +S  VELSE+AR GV ASS+WVMESMNKGTDSYGVTTGFGATSHRRTKNG ALQKELIRFLNAGIFG+  E+SHTLPHS TRAAMLVR+NTLLQG+SGIRFEILEAIT  LN+NITP LPLRGTITASGDLVPLSYIA  LTG
Sbjct:    5 GAHKSNG---GGVDAMLCGGDIKTKNMVINAEDPLNWGAAAEQMKGSHLDEVKRMVAEFRKPVVNLGGETLTIGQVAAISTIGNSVKVELSETARAGVNASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGVALQKELIRFLNAGIFGSTKETSHTLPHSATRAAMLVRINTLLQGFSGIRFEILEAITSFLNNNITPSLPLRGTITASGDLVPLSYIAGLLTG 227          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PAL1_SOLTU (Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum GN=PAL-1 PE=3 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 7.940e-86
Identity = 164/220 (74.55%), Postives = 186/220 (84.55%), Query Frame = 1
Query:  172 ENGHQNGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIA-----TSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            +NGH NG +E +     +  S  D LNW +  ++L+GSHL+EVK+MV E+RKP+V L GETLTVAQVA+IA     TS   VELSESAR GV ASS+WVM+SM+KGTDSYGVTTGF ATSHRRTKNGGALQKELI+FLNAG+FGNGTES+HTLPHS TRAAMLVR+NTLLQGYSGIRFEILEAITKL+N NITPCLPLRGT+TASGDLVPLSYIA  LTG
Sbjct:    7 QNGHVNGEVEEVL----WKKSIHDPLNWEMAVDSLRGSHLDEVKKMVDEFRKPIVKLWGETLTVAQVASIANADNKTSGFKVELSESARAGVKASSDWVMDSMSKGTDSYGVTTGFCATSHRRTKNGGALQKELIKFLNAGVFGNGTESTHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINSNITPCLPLRGTVTASGDLVPLSYIAGLLTG 222          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PAL1_PETCR (Phenylalanine ammonia-lyase 1 OS=Petroselinum crispum GN=PAL1 PE=1 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.769e-85
Identity = 169/222 (76.13%), Postives = 181/222 (81.53%), Query Frame = 1
Query:  160 GATTENGHQNGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT---SSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            GATT NGH NG     C          D L WG+ AE + GSHL+EVK+MVAEYRKPVV LGGETLT++QVAAI+    S   VELSE+AR GV ASS+WVM+SMNKGTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFGNG  S +TLPHS TRAAMLVR+NTLLQGYSGIRFEILEAITK LN NITPCLPLRGTITASGDLVPLSYIA  LTG
Sbjct:    6 GATT-NGHVNGNGMDFCMKTE------DPLYWGIAAEAMTGSHLDEVKKMVAEYRKPVVKLGGETLTISQVAAISARDGSGVTVELSEAARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNG--SDNTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKFLNQNITPCLPLRGTITASGDLVPLSYIAGLLTG 218          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PAL2_CICAR (Phenylalanine ammonia-lyase 2 OS=Cicer arietinum GN=PAL2 PE=2 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 3.017e-85
Identity = 159/216 (73.61%), Postives = 183/216 (84.72%), Query Frame = 1
Query:  175 NGHQNGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSSTNV--ELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            NG+ NG    +C N N N S+ D+LNWG+ A++++GSHL+EVKRMV EYRK VV LGG+ LT++QVAA+AT +T V  EL+E  R  V ASS+WV++SMNKGTDSYGVTTGFGATSHRRTK GGALQ ELIRFLNAGIFGNGTES+ TLPH+ TRAAMLVR+NTLLQGYSGIRFEI+EAI K LNHNITPCLPLRGTITASGDLVPLSY+A  L G
Sbjct:    6 NGNCNGSSLNVC-NGNGNLSNNDSLNWGMAADSMRGSHLDEVKRMVEEYRKAVVPLGGKGLTISQVAAVATQNTGVAVELAEETRYAVKASSDWVVDSMNKGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNGTESTQTLPHTATRAAMLVRINTLLQGYSGIRFEIMEAIAKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIG 220          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PAL1_LITER (Phenylalanine ammonia-lyase 1 OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 3.017e-85
Identity = 162/212 (76.42%), Postives = 180/212 (84.91%), Query Frame = 1
Query:  196 LEGLCKNDN---YNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT--SSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            +E + +N N     +   D LNW + +E++KGSHL+EVK MVAE+RKPVV L G+TLT+ QVAAIA       VEL+E+AREGV ASS+WVM+SMNKGTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFGNGTE+SHTLPHS TRAAMLVR+NTLLQGYSGIRFEILEAITK LN NITPCLPLRGTITASGDLVPLSYIA  LTG
Sbjct:    1 METIVENGNGKTMEFCMKDPLNWEMASESMKGSHLDEVKNMVAEFRKPVVQLAGKTLTIGQVAAIAARDDGVTVELAEAAREGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTETSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKFLNTNITPCLPLRGTITASGDLVPLSYIAGLLTG 212          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PALY_STYHU (Phenylalanine ammonia-lyase OS=Stylosanthes humilis GN=PAL17.1 PE=2 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 3.941e-85
Identity = 161/214 (75.23%), Postives = 180/214 (84.11%), Query Frame = 1
Query:  181 HQNGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSS--TNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            H N         +N      D LNW   AE LKGSHL+EVKRMV+EYRKP+VNLGG+TLT++QVAAIA +    +V+LSE++R GV ASS+WVM+SMN GTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFGNGTE++ TLPH+ TRAAMLVR+NTLLQGYSGIRFEILEAITKLLN+NITPCLPLRGTITASGDLVPLSYIA  LTG
Sbjct:    4 HANADATFCLTANNGQQPRHDPLNWAAAAEALKGSHLDEVKRMVSEYRKPLVNLGGQTLTISQVAAIAANDQGVSVQLSEASRAGVKASSDWVMDSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTETNCTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTG 217          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PAL2_PETCR (Phenylalanine ammonia-lyase 2 OS=Petroselinum crispum GN=PAL2 PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 8.779e-85
Identity = 168/222 (75.68%), Postives = 180/222 (81.08%), Query Frame = 1
Query:  160 GATTENGHQNGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT---SSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            GA T NGH NG     C          D L WG+ AE + GSHL+EVK+MVAEYRKPVV LGGETLT++QVAAI+    S   VELSE+AR GV ASS+WVM+SMNKGTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFGNG  S +TLPHS TRAAMLVR+NTLLQGYSGIRFEILEAITK LN NITPCLPLRGTITASGDLVPLSYIA  LTG
Sbjct:    6 GAIT-NGHVNGNGMDFCMKTE------DPLYWGIAAEAMTGSHLDEVKKMVAEYRKPVVKLGGETLTISQVAAISARDGSGVTVELSEAARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNG--SDNTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKFLNQNITPCLPLRGTITASGDLVPLSYIAGLLTG 218          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PAL1_SOLLC (Phenylalanine ammonia-lyase OS=Solanum lycopersicum GN=PAL PE=2 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 2.554e-84
Identity = 161/209 (77.03%), Postives = 179/209 (85.65%), Query Frame = 1
Query:  205 LCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIA-----TSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            LCK      S  D LNW + A++L+GSHL+EVK+MV E+RKP+V LGGETL+VAQVA+IA     ++   VELSESAR GV ASS+WVM+SM+KGTDSYGVT GFGATSHRRTKNGGALQKELIRFLNAG+FGNG ES HTLPHS TRAAMLVR+NTLLQGYSGIRFEILEAITKL+N NITPCLPLRGTITASGDLVPLSYIA  LTG
Sbjct:    3 LCKK-----SINDPLNWEMAADSLRGSHLDEVKKMVDEFRKPIVKLGGETLSVAQVASIANVDDKSNGVKVELSESARAGVKASSDWVMDSMSKGTDSYGVTAGFGATSHRRTKNGGALQKELIRFLNAGVFGNGIESFHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINSNITPCLPLRGTITASGDLVPLSYIAGLLTG 206          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PAL2_PHAVU (Phenylalanine ammonia-lyase class 2 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 5.691e-84
Identity = 160/197 (81.22%), Postives = 172/197 (87.31%), Query Frame = 1
Query:  232 SSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT--SSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            ++GD LNW   AE L GSHL+EVKRMVAEYRKP V LGG+TLT+AQVAA A       VEL+ESAR  V A S+WVMESM+KGTDSYG+TTGFGATSHRRTK GGALQKELIRFLNAGIFGNGTES+ TLPH+ TRAAMLVRVNTLLQGYSGIRFEILEAITKLLN+NITPCLPLRGTITASGDLVPLSYIA  LTG
Sbjct:   18 AAGDPLNWAAAAEALSGSHLDEVKRMVAEYRKPAVRLGGQTLTIAQVAATAAHDQGLKVELAESARACVKAISDWVMESMDKGTDSYGITTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNCTLPHTATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTG 214          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PAL2_SOLTU (Phenylalanine ammonia-lyase 2 (Fragment) OS=Solanum tuberosum GN=PAL-2 PE=3 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.656e-83
Identity = 161/224 (71.88%), Postives = 185/224 (82.59%), Query Frame = 1
Query:  172 ENGHQNGGLE----GLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIA-----TSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            +N H NG ++     LCK  NY       LNW + A++L+GS L++VK+MV E+RKP+V LGGETLTVAQVA+IA     ++   VELSESAR GV ASS+WVM+SM+KGTDSYGVTTGFGATSHRRTKNGG LQK LIRFLNAG+FG GTES+HTLPHS TRAAMLVR+NTLLQGYSGIRFEILEAITKL+N NI+PCLPLRGT+TASGDLVPLSYIA  LTG
Sbjct:    7 QNEHINGEVKEVLWNLCKKQNYL-----PLNWEMAADSLRGSKLDQVKKMVDEFRKPIVKLGGETLTVAQVASIANVDNKSNGVRVELSESARAGVKASSDWVMDSMSKGTDSYGVTTGFGATSHRRTKNGGTLQKNLIRFLNAGVFGIGTESTHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINSNISPCLPLRGTVTASGDLVPLSYIAGLLTG 225          
The following BLAST results are available for this feature:
BLAST of CK933020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
PAL1_ARATH4.655e-8675.66Phenylalanine ammonia-lyase 1 OS=Arabidopsis thali... [more]
PAL1_SOLTU7.940e-8674.55Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum... [more]
PAL1_PETCR1.769e-8576.13Phenylalanine ammonia-lyase 1 OS=Petroselinum cris... [more]
PAL2_CICAR3.017e-8573.61Phenylalanine ammonia-lyase 2 OS=Cicer arietinum G... [more]
PAL1_LITER3.017e-8576.42Phenylalanine ammonia-lyase 1 OS=Lithospermum eryt... [more]
PALY_STYHU3.941e-8575.23Phenylalanine ammonia-lyase OS=Stylosanthes humili... [more]
PAL2_PETCR8.779e-8575.68Phenylalanine ammonia-lyase 2 OS=Petroselinum cris... [more]
PAL1_SOLLC2.554e-8477.03Phenylalanine ammonia-lyase OS=Solanum lycopersicu... [more]
PAL2_PHAVU5.691e-8481.22Phenylalanine ammonia-lyase class 2 OS=Phaseolus v... [more]
PAL2_SOLTU1.656e-8371.88Phenylalanine ammonia-lyase 2 (Fragment) OS=Solanu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_E06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933020 ID=CK933020; Name=CK933020; organism=Citrus sinensis; type=EST; length=818bp
GCGGGGAGGAAATCCATTATATTTATAGANNNCAGAATTTCCTTTAGCTC
ATTCATTCTTCATCACTCCCATTCATTCATTCTTCTTCTTCTTCTTCTTT
CTACAGTTTTGGTATTTTTTGTAATTGCAGTAACATTTACGTAAAACGAT
ATGGAGAGAGGTGCCACTACTGAGAATGGTCACCAGAACGGTGGCCTGGA
GGGTTTGTGCAAGAATGACAATTACAATTACAGTTCTGGGGATGCGTTGA
ACTGGGGAGTGATGGCGGAGACGTTGAAGGGGAGCCATTTGGAGGAAGTG
AAGCGTATGGTGGCGGAGTACAGGAAGCCGGTGGTCAACCTCGGTGGTGA
GACGTTGACCGTAGCACAGGTGGCTGCCATTGCCACGTCCTCTACGAATG
TGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCTAGGCCAGCAGTAATTGG
GTGATGGAGAGCATGAATAAGGGTACCGACAGTTACGGCGTTACCACTGG
CTTTGGCGCCACTTCTCATCGGAGAACCAAGAACGGCGGTGCTCTTCAGA
AGGAGCTCATTAGATTTTTGAACGCTGGAATCTTTGGAAACGGAACAGAG
TCATCTCACACGCTACCTCACTCAACAACAAGGGCAGCCATGCTTGTGAG
GGTTAACACTCTTCTCCAGGGCTACTCTGGCATCCGATTTGAAATCCTGG
AAGCGATCACAAAGCTGCTCAATCACAACATCACTCCATGCCTCCCTCTT
CGCGGCACAATCACTGCTTCAGGGGATCTGGTTCCTCTTTCCTACATTGC
CNNNNTGCTCACCGGCCG
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