CK933020

Overview
NameCK933020
Unique NameCK933020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933020_ssr80 microsatellite CK933020_ssr80:80..97. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933020_ssr70 microsatellite CK933020_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10798 contig Csv1_Contig10798:1..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PAL4_ARATH (Phenylalanine ammonia-lyase 4 OS=Arabidopsis thaliana GN=PAL4 PE=1 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 8.217e-83
Identity = 162/208 (77.88%), Postives = 173/208 (83.17%), Query Frame = 1
Query:  205 LCKNDNYNYS-SGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSS--TNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGT-ESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            LC  +N+  + SGD LNW   AE LKGSHL+EVKRMV EYRK  V LGGETLT+ QVAA+A     + VEL+E AR GV ASS WVMESMN+GTDSYGVTTGFGATSHRRTK GGALQ ELIRFLNAGIFG G  ++SHTLP  TTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNH ITPCLPLRGTITASGDLVPLSYIA  LTG
Sbjct:    3 LCNQNNHITAVSGDPLNWNATAEALKGSHLDEVKRMVKEYRKEAVKLGGETLTIGQVAAVARGGGGSTVELAEEARAGVKASSEWVMESMNRGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGPGAGDTSHTLPKPTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHEITPCLPLRGTITASGDLVPLSYIAGLLTG 210          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PAL2_ARATH (Phenylalanine ammonia-lyase 2 OS=Arabidopsis thaliana GN=PAL2 PE=1 SV=2)

HSP 1 Score: 306.99 bits (785), Expect = 8.217e-83
Identity = 157/194 (80.93%), Postives = 171/194 (88.14%), Query Frame = 1
Query:  241 DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT--SSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            D LNWG+ A+ +KGSHL+EVK+MV EYR+PVVNLGGETLT+ QVAAI+T   S  VEL+E++R GV ASS+WVMESMNKGTDSYGVTTGFGATSHRRTKNG ALQ ELIRFLNAGIFGN  E+ HTLP S TRAAMLVRVNTLLQGYSGIRFEILEAIT LLNHNI+P LPLRGTITASGDLVPLSYIA  LTG
Sbjct:   26 DPLNWGLAADQMKGSHLDEVKKMVEEYRRPVVNLGGETLTIGQVAAISTVGGSVKVELAETSRAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGTALQTELIRFLNAGIFGNTKETCHTLPQSATRAAMLVRVNTLLQGYSGIRFEILEAITSLLNHNISPSLPLRGTITASGDLVPLSYIAGLLTG 219          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PAL1_RUBID (Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=PAL1 PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 6.956e-82
Identity = 156/212 (73.58%), Postives = 174/212 (82.08%), Query Frame = 1
Query:  187 NGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT--SSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            NG +E  C+         D LNW + AE+LKGSH++E+KRMV++YRKPVV LGGETLT+ QVAAIA+      VELSE  R GV ASS+WVM+SM KGTDSYGVTTGFGATSHRRTKNGGALQ+ELIRFLNAGIFG+  +S+H LPH+ TRAAMLVR NTLLQGYSGIRFEILEAITK LN NITPCLPLRGTITASGDLVPLSYIA  L G
Sbjct:    8 NGAVESFCEGH-------DPLNWNMAAESLKGSHVDELKRMVSDYRKPVVKLGGETLTIGQVAAIASHDGGVRVELSEEKRAGVKASSDWVMDSMGKGTDSYGVTTGFGATSHRRTKNGGALQRELIRFLNAGIFGSSLDSTHKLPHTATRAAMLVRFNTLLQGYSGIRFEILEAITKFLNGNITPCLPLRGTITASGDLVPLSYIAGLLIG 212          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=ZB8 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 2.167e-75
Identity = 151/217 (69.59%), Postives = 168/217 (77.42%), Query Frame = 1
Query:  172 ENGHQNG-GLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSS-TNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            ENG  +  G+ GLC          D LNWG   E + GSHL+EVKRMVAEYR+P+V + G +L +AQVAA+A +    VEL ESARE V ASS+WVM SM  GTDSYGVTTGFGATSHRRTK GGALQ+ELIRFLNAG FG GT+  H LP   TRAAMLVR+NTLLQGYSGIRFEILEAI KLLN N+TPCLPLRGTITASGDLVPLSYIA  +TG
Sbjct:    4 ENGRVSANGMSGLC----VAAPRADPLNWGKATEEMTGSHLDEVKRMVAEYRQPLVKIEGASLRIAQVAAVAAAGEARVELDESARERVKASSDWVMNSMMNGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNAGAFGTGTDG-HVLPAEATRAAMLVRINTLLQGYSGIRFEILEAIAKLLNANVTPCLPLRGTITASGDLVPLSYIAGLVTG 215          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSI (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. indica GN=ZB8 PE=3 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 2.167e-75
Identity = 151/217 (69.59%), Postives = 168/217 (77.42%), Query Frame = 1
Query:  172 ENGHQNG-GLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSS-TNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            ENG  +  G+ GLC          D LNWG   E + GSHL+EVKRMVAEYR+P+V + G +L +AQVAA+A +    VEL ESARE V ASS+WVM SM  GTDSYGVTTGFGATSHRRTK GGALQ+ELIRFLNAG FG GT+  H LP   TRAAMLVR+NTLLQGYSGIRFEILEAI KLLN N+TPCLPLRGTITASGDLVPLSYIA  +TG
Sbjct:    4 ENGRVSANGMSGLC----VAAPRADPLNWGKATEEMTGSHLDEVKRMVAEYRQPLVKIEGASLRIAQVAAVAAAGEARVELDESARERVKASSDWVMNSMMNGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNAGAFGTGTDG-HVLPAEATRAAMLVRINTLLQGYSGIRFEILEAIAKLLNANVTPCLPLRGTITASGDLVPLSYIAGLVTG 215          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PAL2_IPOBA (Phenylalanine ammonia-lyase OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 4.828e-75
Identity = 146/196 (74.49%), Postives = 161/196 (82.14%), Query Frame = 1
Query:  241 DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSSTNVELSE----SAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            D LNW + A++LKGSHL+EVKRMVAE+R P V +GG+TLT  +   IA      + S     + RE   +SS+WVM SMN GTDSYGVTTGFGATSHRRTKNG ALQ+ELIRFLNAGIFG GT +SHTLPHS TRAAMLVR+NTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIA  LTG
Sbjct:   18 DPLNWEMAADSLKGSHLDEVKRMVAEFRNPAVKIGGQTLTSLRSPPIAARDNASKWSSPRLPARRE---SSSDWVMNSMNNGTDSYGVTTGFGATSHRRTKNGHALQQELIRFLNAGIFGTGTGASHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTG 210          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PALY_BROFI (Phenylalanine ammonia-lyase OS=Bromheadia finlaysoniana GN=PAL PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.553e-73
Identity = 143/194 (73.71%), Postives = 166/194 (85.57%), Query Frame = 1
Query:  241 DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATS--STNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            D LNWG  A  L+GSHL+EVK+MV E+R+PVV L G  L ++QVAA+A    ++ VEL+ESAR GV ASS+WV+ES++KGTDSYGVTTGFGATSHRRTK GGALQKELI+FLNAGIFG+G  +S+TLP + TRAAMLVR+NTLLQGYSGIRFEIL+AI  LLN NITPCLPLRGTITASGDLVPLSY+A  LTG
Sbjct:   15 DPLNWGAAAAELQGSHLDEVKKMVEEFRRPVVKLEGVKLKISQVAAVAFGGGASAVELAESARAGVKASSDWVLESVDKGTDSYGVTTGFGATSHRRTKQGGALQKELIKFLNAGIFGSG--NSNTLPSAATRAAMLVRINTLLQGYSGIRFEILKAIATLLNKNITPCLPLRGTITASGDLVPLSYLAGILTG 206          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PAL3_ARATH (Phenylalanine ammonia-lyase 3 OS=Arabidopsis thaliana GN=PAL3 PE=1 SV=3)

HSP 1 Score: 274.248 bits (700), Expect = 5.902e-73
Identity = 143/195 (73.33%), Postives = 157/195 (80.51%), Query Frame = 1
Query:  241 DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTES---SHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            D LNW V AE LKGSHLEEVK+MV +YRK  V LGGETLT+ QVAA+A+    VELSE AR GV ASS+WVMESMN+ TD+YG+TTGFG++S RRT  G ALQKELIR+LNAGIF  G E    S+TLP   TRAAML+RVNTLLQGYSGIRFEILEAIT LLN  ITP LPLRGTITASGDLVPLSYIA  L G
Sbjct:   13 DPLNWNVAAEALKGSHLEEVKKMVKDYRKGTVQLGGETLTIGQVAAVASGGPTVELSEEARGGVKASSDWVMESMNRDTDTYGITTGFGSSSRRRTDQGAALQKELIRYLNAGIFATGNEDDDRSNTLPRPATRAAMLIRVNTLLQGYSGIRFEILEAITTLLNCKITPLLPLRGTITASGDLVPLSYIAGFLIG 207          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PAL1_POPKI (Phenylalanine ammonia-lyase G1 OS=Populus kitakamiensis GN=PALG1 PE=3 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 7.709e-73
Identity = 142/186 (76.34%), Postives = 156/186 (83.87%), Query Frame = 1
Query:  265 AETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSSTNV--ELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            A++LKGSHL+EVKRM+ EYR PVV LGGETLT+ QV AIA+    V  ELSE AR GV AS++WVM+S N    S+ VT GFGATSHR+TK GG LQKELIRFLN GIFGNGTES+H LP S TRAAMLVR NTLLQGYSGIRFE+LEAITKLLNHNITPCLPLRGTITASGDLVPL+YIA  LTG
Sbjct:    3 ADSLKGSHLDEVKRMIEEYRNPVVKLGGETLTIGQVTAIASGHVGVMVELSEEARAGVKASNDWVMDSKN----SHAVTAGFGATSHRKTKQGGELQKELIRFLNVGIFGNGTESNHILPRSATRAAMLVRTNTLLQGYSGIRFEMLEAITKLLNHNITPCLPLRGTITASGDLVPLAYIAGLLTG 184          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PALY_WHEAT (Phenylalanine ammonia-lyase OS=Triticum aestivum GN=PAL PE=3 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.007e-72
Identity = 147/196 (75.00%), Postives = 156/196 (79.59%), Query Frame = 1
Query:  232 SSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSS-TNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            S  D LNWG  AE L GSHLE VKRMV EYRKPVV + G T T+A VAA+A  S T VEL ESAR  V  SS+WVM SM  GTDSYGVTTGFGATSHRRTK GGALQ+ELIRFLNAG FG GT+  H LP + TRAAMLVRVNTLLQGYSGIRFEILE I  LLN N+TPCLPLRGTITASGDLVPLSYIA  +TG
Sbjct:    9 SRADPLNWGKAAEELSGSHLEAVKRMVEEYRKPVVTMEGAT-TIAMVAAVAAGSDTRVELDESARGRVKESSDWVMNSMMNGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNAGAFGTGTD-GHVLPAAATRAAMLVRVNTLLQGYSGIRFEILETIATLLNANVTPCLPLRGTITASGDLVPLSYIAGLVTG 202          
The following BLAST results are available for this feature:
BLAST of CK933020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
PAL4_ARATH8.217e-8377.88Phenylalanine ammonia-lyase 4 OS=Arabidopsis thali... [more]
PAL2_ARATH8.217e-8380.93Phenylalanine ammonia-lyase 2 OS=Arabidopsis thali... [more]
PAL1_RUBID6.956e-8273.58Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=P... [more]
PAL2_ORYSJ2.167e-7569.59Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PAL2_ORYSI2.167e-7569.59Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PAL2_IPOBA4.828e-7574.49Phenylalanine ammonia-lyase OS=Ipomoea batatas PE=... [more]
PALY_BROFI1.553e-7373.71Phenylalanine ammonia-lyase OS=Bromheadia finlayso... [more]
PAL3_ARATH5.902e-7373.33Phenylalanine ammonia-lyase 3 OS=Arabidopsis thali... [more]
PAL1_POPKI7.709e-7376.34Phenylalanine ammonia-lyase G1 OS=Populus kitakami... [more]
PALY_WHEAT1.007e-7275.00Phenylalanine ammonia-lyase OS=Triticum aestivum G... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_E06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933020 ID=CK933020; Name=CK933020; organism=Citrus sinensis; type=EST; length=818bp
GCGGGGAGGAAATCCATTATATTTATAGANNNCAGAATTTCCTTTAGCTC
ATTCATTCTTCATCACTCCCATTCATTCATTCTTCTTCTTCTTCTTCTTT
CTACAGTTTTGGTATTTTTTGTAATTGCAGTAACATTTACGTAAAACGAT
ATGGAGAGAGGTGCCACTACTGAGAATGGTCACCAGAACGGTGGCCTGGA
GGGTTTGTGCAAGAATGACAATTACAATTACAGTTCTGGGGATGCGTTGA
ACTGGGGAGTGATGGCGGAGACGTTGAAGGGGAGCCATTTGGAGGAAGTG
AAGCGTATGGTGGCGGAGTACAGGAAGCCGGTGGTCAACCTCGGTGGTGA
GACGTTGACCGTAGCACAGGTGGCTGCCATTGCCACGTCCTCTACGAATG
TGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCTAGGCCAGCAGTAATTGG
GTGATGGAGAGCATGAATAAGGGTACCGACAGTTACGGCGTTACCACTGG
CTTTGGCGCCACTTCTCATCGGAGAACCAAGAACGGCGGTGCTCTTCAGA
AGGAGCTCATTAGATTTTTGAACGCTGGAATCTTTGGAAACGGAACAGAG
TCATCTCACACGCTACCTCACTCAACAACAAGGGCAGCCATGCTTGTGAG
GGTTAACACTCTTCTCCAGGGCTACTCTGGCATCCGATTTGAAATCCTGG
AAGCGATCACAAAGCTGCTCAATCACAACATCACTCCATGCCTCCCTCTT
CGCGGCACAATCACTGCTTCAGGGGATCTGGTTCCTCTTTCCTACATTGC
CNNNNTGCTCACCGGCCG
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