CK933020

Overview
NameCK933020
Unique NameCK933020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933020_ssr80 microsatellite CK933020_ssr80:80..97. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933020_ssr70 microsatellite CK933020_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10798 contig Csv1_Contig10798:1..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PAL3_PHAVU (Phenylalanine ammonia-lyase class 3 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 9.423e-71
Identity = 139/198 (70.20%), Postives = 163/198 (82.32%), Query Frame = 1
Query:  232 SSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGG-ETLTVAQVAAIATS--STNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            S+ D LNWG   E+LKGSHLEEVK MVAEYR+ V+++GG ETLTV++VAA+A       V+LSESAREGV +S  W++++++KG   YGVTTGFGA S+R+T+ G ALQKE++RFLN  IFG  TE SHTLP S TRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHN+TP LPLRGTITASGDL+PLSYIA  L G
Sbjct:   17 SNTDPLNWGNAVESLKGSHLEEVKGMVAEYREAVIHVGGGETLTVSKVAAVANQYLQAKVDLSESAREGVDSSCKWIVDNIDKGIPIYGVTTGFGANSNRQTQEGLALQKEMVRFLNCAIFGYQTELSHTLPKSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNVTPILPLRGTITASGDLIPLSYIAALLIG 214          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PAL1_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=PAL PE=1 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 1.078e-66
Identity = 132/196 (67.35%), Postives = 151/196 (77.04%), Query Frame = 1
Query:  241 DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIA----TSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            D LNWG  A  + GSHL+EVKRMVA++R+P+V + G TL V QVAA+A     +   VEL E AR  V ASS W++  +  G D YGVTTGFG TSHRRTK+G ALQ EL+R LNAGIFG G++  HTLP  T RAAMLVR+NTLLQGYSGIRFEILEAITKLLN  +TPCLPLRGTITASGDLVPLSYIA  +TG
Sbjct:   11 DPLNWGAAAAEMAGSHLDEVKRMVAQFREPLVKIQGATLRVGQVAAVAQAKDAAGVAVELDEEARPRVKASSEWILNCIAHGGDIYGVTTGFGGTSHRRTKDGPALQVELLRHLNAGIFGTGSDG-HTLPSETVRAAMLVRINTLLQGYSGIRFEILEAITKLLNTGVTPCLPLRGTITASGDLVPLSYIAGLITG 205          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PALY_PINTA (Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.725e-56
Identity = 123/208 (59.13%), Postives = 149/208 (71.63%), Query Frame = 1
Query:  202 GLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEY-RKPVVNLGGETLTVAQVAAIAT-SSTNVEL-SESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            GLC +  +  S  D LNW   A+ ++GSH EEVK MV  Y     +++ G++LT++ VAA+A  S   V+L + +A+  V  SSNWV+  M KGTD+YGVTTGFGATSHRRT  G  LQKELIRFLNAG+ G   E+   L   TTRAAMLVR NTLLQGYSG+R++ILE + KLLN  +TP LPLRGTITASGDLVPLSYIA  LTG
Sbjct:   19 GLCTD--FGSSGSDPLNWVRAAKAMEGSHFEEVKAMVDSYFGAKEISIEGKSLTISDVAAVARRSQVKVKLDAAAAKSRVEESSNWVLTQMTKGTDTYGVTTGFGATSHRRTNQGAELQKELIRFLNAGVLGKCPEN--VLSEDTTRAAMLVRTNTLLQGYSGVRWDILETVEKLLNAWLTPKLPLRGTITASGDLVPLSYIAGLLTG 222          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PALY_PERAE (Phenylalanine ammonia-lyase OS=Persea americana GN=PAL PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.367e-53
Identity = 106/121 (87.60%), Postives = 109/121 (90.08%), Query Frame = 1
Query:  454 MESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            MESM+KGTDSYGVTTGFGATSHRRTK GGAL KELIRFLNAGIFG   ES HTL  S TRAAMLVR+NTLLQGYSGIRFEILEAIT LLNH+ITPCLPLRGTITASGDLVPLSYIA  LTG
Sbjct:    1 MESMDKGTDSYGVTTGFGATSHRRTKQGGALHKELIRFLNAGIFGTNGESGHTLAPSATRAAMLVRINTLLQGYSGIRFEILEAITSLLNHSITPCLPLRGTITASGDLVPLSYIAGMLTG 121          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PAL4_POPKI (Phenylalanine ammonia-lyase G4 (Fragment) OS=Populus kitakamiensis GN=PALG4 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.589e-31
Identity = 66/72 (91.67%), Postives = 69/72 (95.83%), Query Frame = 1
Query:  601 SSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            S+HTLPHS +RAAMLVR+NTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIA  LTG
Sbjct:    1 STHTLPHSASRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTG 72          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PALY_RHORB (Phenylalanine ammonia-lyase OS=Rhodotorula rubra GN=PAL PE=3 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 6.832e-29
Identity = 79/199 (39.70%), Postives = 117/199 (58.79%), Query Frame = 1
Query:  256 GVMAETLKGSHLEEVKRMVAEY-RKPVVNLGGETLTVAQVAAIATSSTNVELSESA--REGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIF---------GNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            G +  T + + L+ V+R++A+      + L G TLT+  V   A    +V++++S   RE + AS  ++   ++     YGVTTGFG ++  RT++  +LQK L+     G+          G G E+S  LP    R AM +RVN+L +G+S +R  +LEA+T  LNH ITP +PLRGTI+ASGDL PLSYIA  +TG
Sbjct:   39 GSLLPTTETTQLDIVERILADAGATDQIKLDGYTLTLGDVVGAARRGRSVKVADSPHIREKIDASVEFLRTQLDNSV--YGVTTGFGGSADTRTEDAISLQKALLEHQLCGVLPTSMDGFALGRGLENS--LPLEVVRGAMTIRVNSLTRGHSAVRIVVLEALTNFLNHGITPIVPLRGTISASGDLSPLSYIAASITG 233          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PALY_RHOTO (Phenylalanine ammonia-lyase OS=Rhodosporidium toruloides GN=PAL PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.430e-26
Identity = 78/214 (36.45%), Postives = 115/214 (53.74%), Query Frame = 1
Query:  232 SSGDALNWGVMAETLKGSHL--------EEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSSTNVELSES--AREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIF---------GNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            S+  A+N       + GSHL        + V++M+A      + L G +L +  V + A     V + +S   R  +  S  ++   ++     YGVTTGFG ++  RT++  +LQK L+     G+          G G E+S  LP    R AM +RVN+L +G+S +R  +LEA+T  LNH ITP +PLRGTI+ASGDL PLSYIA  ++G
Sbjct:   18 SAKQAVNGASTNLAVAGSHLPTTQVTQVDIVEKMLAAPTDSTLELDGYSLNLGDVVSAARKGRPVRVKDSDEIRSKIDKSVEFLRSQLSMSV--YGVTTGFGGSADTRTEDAISLQKALLEHQLCGVLPSSFDSFRLGRGLENS--LPLEVVRGAMTIRVNSLTRGHSAVRLVVLEALTNFLNHGITPIVPLRGTISASGDLSPLSYIAAAISG 227          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PALY_AMAMU (Phenylalanine ammonia-lyase OS=Amanita muscaria GN=PAL PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.687e-25
Identity = 71/198 (35.86%), Postives = 114/198 (57.58%), Query Frame = 1
Query:  262 MAETLKGSHLEEVKRMVAEYRKP-VVNLGGETLTVAQVAAIATSSTNVELSES--AREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTE----------SSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            M +T   S   E  R +  Y+    + + G+TL++A VAA A  +  VEL ES   +E V  S   +   ++ G   YG++TGFG ++  RT     L   L++  + GI    TE          ++ ++P +  R A+L+R+N+L++G+SGIR+E++E + +LL  N+ P +PLRG+I++SGDL PLSYIA  + G
Sbjct:   43 MTKTSALSQFLEAYRELEGYKNGRAIKVDGQTLSIAAVAAAARYNAAVELDESPLVKERVRKSQLAIANKVSTGASVYGLSTGFGGSADTRTDKPMLLGFALLQHQHVGILPTSTEPLDVLPLQDANNTSMPEAWIRGAILIRMNSLIRGHSGIRWELIEKMRELLAANVIPVVPLRGSISSSGDLSPLSYIAGTIIG 240          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_STRP6 (Histidine ammonia-lyase OS=Streptococcus pyogenes serotype M6 GN=hutH PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.631e-22
Identity = 64/164 (39.02%), Postives = 97/164 (59.15%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            V+NL GE+LT+  V AIA       + +SA E V AS   V + +++    YGVTTGFG+  +     ++   LQ+ LIR   +G FG+       LP    RA ML+R+N+L++GYSGIR   +E + +LLN  + P +P +G++ ASGDL PL+++   + G
Sbjct:    4 VINLDGESLTIEDVIAIARQGVACRIDDSAIEAVNASRKIVDDIVSEKRVVYGVTTGFGSLCNVSISPEDTVQLQENLIRTHASG-FGD------PLPEDAVRAIMLIRINSLVKGYSGIRLSTIEKLLELLNKGVHPYIPEKGSLGASGDLAPLAHMVLPMLG 160          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_STRP3 (Histidine ammonia-lyase OS=Streptococcus pyogenes serotype M3 GN=hutH PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.631e-22
Identity = 64/164 (39.02%), Postives = 97/164 (59.15%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            V+NL GE+LT+  V AIA       + +SA E V AS   V + +++    YGVTTGFG+  +     ++   LQ+ LIR   +G FG+       LP    RA ML+R+N+L++GYSGIR   +E + +LLN  + P +P +G++ ASGDL PL+++   + G
Sbjct:    4 VINLDGESLTIEDVIAIARQGVACRIDDSAIEAVNASRKIVDDIVSEKRVVYGVTTGFGSLCNVSISPEDTVQLQENLIRTHASG-FGD------PLPEDAVRAIMLIRINSLVKGYSGIRLSTIEKLLELLNKGVHPYIPEKGSLGASGDLAPLAHMVLPMLG 160          
The following BLAST results are available for this feature:
BLAST of CK933020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
PAL3_PHAVU9.423e-7170.20Phenylalanine ammonia-lyase class 3 OS=Phaseolus v... [more]
PAL1_ORYSJ1.078e-6667.35Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PALY_PINTA1.725e-5659.13Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL ... [more]
PALY_PERAE1.367e-5387.60Phenylalanine ammonia-lyase OS=Persea americana GN... [more]
PAL4_POPKI5.589e-3191.67Phenylalanine ammonia-lyase G4 (Fragment) OS=Popul... [more]
PALY_RHORB6.832e-2939.70Phenylalanine ammonia-lyase OS=Rhodotorula rubra G... [more]
PALY_RHOTO2.430e-2636.45Phenylalanine ammonia-lyase OS=Rhodosporidium toru... [more]
PALY_AMAMU2.687e-2535.86Phenylalanine ammonia-lyase OS=Amanita muscaria GN... [more]
HUTH_STRP63.631e-2239.02Histidine ammonia-lyase OS=Streptococcus pyogenes ... [more]
HUTH_STRP33.631e-2239.02Histidine ammonia-lyase OS=Streptococcus pyogenes ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_E06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933020 ID=CK933020; Name=CK933020; organism=Citrus sinensis; type=EST; length=818bp
GCGGGGAGGAAATCCATTATATTTATAGANNNCAGAATTTCCTTTAGCTC
ATTCATTCTTCATCACTCCCATTCATTCATTCTTCTTCTTCTTCTTCTTT
CTACAGTTTTGGTATTTTTTGTAATTGCAGTAACATTTACGTAAAACGAT
ATGGAGAGAGGTGCCACTACTGAGAATGGTCACCAGAACGGTGGCCTGGA
GGGTTTGTGCAAGAATGACAATTACAATTACAGTTCTGGGGATGCGTTGA
ACTGGGGAGTGATGGCGGAGACGTTGAAGGGGAGCCATTTGGAGGAAGTG
AAGCGTATGGTGGCGGAGTACAGGAAGCCGGTGGTCAACCTCGGTGGTGA
GACGTTGACCGTAGCACAGGTGGCTGCCATTGCCACGTCCTCTACGAATG
TGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCTAGGCCAGCAGTAATTGG
GTGATGGAGAGCATGAATAAGGGTACCGACAGTTACGGCGTTACCACTGG
CTTTGGCGCCACTTCTCATCGGAGAACCAAGAACGGCGGTGCTCTTCAGA
AGGAGCTCATTAGATTTTTGAACGCTGGAATCTTTGGAAACGGAACAGAG
TCATCTCACACGCTACCTCACTCAACAACAAGGGCAGCCATGCTTGTGAG
GGTTAACACTCTTCTCCAGGGCTACTCTGGCATCCGATTTGAAATCCTGG
AAGCGATCACAAAGCTGCTCAATCACAACATCACTCCATGCCTCCCTCTT
CGCGGCACAATCACTGCTTCAGGGGATCTGGTTCCTCTTTCCTACATTGC
CNNNNTGCTCACCGGCCG
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