CK933020

Overview
NameCK933020
Unique NameCK933020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933020_ssr80 microsatellite CK933020_ssr80:80..97. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933020_ssr70 microsatellite CK933020_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10798 contig Csv1_Contig10798:1..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_STRP1 (Histidine ammonia-lyase OS=Streptococcus pyogenes serotype M1 GN=hutH PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.631e-22
Identity = 64/164 (39.02%), Postives = 97/164 (59.15%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            V+NL GE+LT+  V AIA       + +SA E V AS   V + +++    YGVTTGFG+  +     ++   LQ+ LIR   +G FG+       LP    RA ML+R+N+L++GYSGIR   +E + +LLN  + P +P +G++ ASGDL PL+++   + G
Sbjct:    4 VINLDGESLTIEDVIAIARQGVACHIDDSAIEAVNASRKIVDDIVSEKRVVYGVTTGFGSLCNVSISPEDTVQLQENLIRTHASG-FGD------PLPEDAVRAIMLIRINSLVKGYSGIRLSTIEKLLELLNKGVHPYIPEKGSLGASGDLAPLAHMVLPMLG 160          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_STRSV (Histidine ammonia-lyase OS=Streptococcus sanguinis (strain SK36) GN=hutH PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 6.194e-22
Identity = 61/164 (37.20%), Postives = 97/164 (59.15%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            V+NL GE LT+  V A+A      E+ + A++ V AS   V + + +    YGVTTGFG+  +     ++   LQ+ LIR  ++G +G+       LP    RA ML+R+N+L++GYSGIR   +E + +LLN  + P +P +G++ ASGDL PL+++   + G
Sbjct:    4 VINLDGEHLTLEDVIAVARHGATCEIDQEAKKAVEASRKIVDDIVREKRVVYGVTTGFGSLCNVSISPEDTTQLQENLIRTHSSG-YGD------PLPEDAVRAIMLIRINSLVKGYSGIRLSTVEKLLELLNKGVVPYIPEKGSLGASGDLAPLAHMVLPMLG 160          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_STRPZ (Histidine ammonia-lyase OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=hutH PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.194e-22
Identity = 64/164 (39.02%), Postives = 97/164 (59.15%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            V+NL GE+LT+  V AIA       + +SA E V AS   V + +++    YGVTTGFG+  +     ++   LQ+ LIR   +G FG+       LP    RA ML+R+N+L++GYSGIR   +E + +LLN  + P +P +G++ ASGDL PL+++   + G
Sbjct:    4 VINLDGESLTLEDVIAIARQGVACRIDDSAVEAVNASRKIVDDIVSEKRVVYGVTTGFGSLCNVSISPEDTVQLQENLIRTHASG-FGD------PLPEDAVRAIMLIRINSLVKGYSGIRLSTIEKLLELLNKGVHPYIPEKGSLGASGDLAPLAHMVLPMLG 160          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_STRPG (Histidine ammonia-lyase OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=hutH PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.194e-22
Identity = 64/164 (39.02%), Postives = 97/164 (59.15%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            V+NL GE+LT+  V AIA       + +SA E V AS   V + +++    YGVTTGFG+  +     ++   LQ+ LIR   +G FG+       LP    RA ML+R+N+L++GYSGIR   +E + +LLN  + P +P +G++ ASGDL PL+++   + G
Sbjct:    4 VINLDGESLTLEDVIAIARQGVACRIDDSAIEAVNASRKIVDDIVSEKRVVYGVTTGFGSLCNVSISPEDTVQLQENLIRTHASG-FGD------PLPEDAVRAIMLIRINSLVKGYSGIRLSTIEKLLELLNKGVHPYIPEKGSLGASGDLAPLAHMVLPMLG 160          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_STRP8 (Histidine ammonia-lyase OS=Streptococcus pyogenes serotype M18 GN=hutH PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.194e-22
Identity = 64/164 (39.02%), Postives = 97/164 (59.15%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            V+NL GE+LT+  V AIA       + +SA E V AS   V + +++    YGVTTGFG+  +     ++   LQ+ LIR   +G FG+       LP    RA ML+R+N+L++GYSGIR   +E + +LLN  + P +P +G++ ASGDL PL+++   + G
Sbjct:    4 VINLDGESLTLEDVIAIARQGVACRIDDSAIEAVNASRKIVDDIVSEKRVVYGVTTGFGSLCNVSISPEDTVQLQENLIRTHASG-FGD------PLPEDAVRAIMLIRINSLVKGYSGIRLSTIEKLLELLNKGVHPYIPEKGSLGASGDLAPLAHMVLPMLG 160          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_STRGC (Histidine ammonia-lyase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=hutH PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.194e-22
Identity = 62/164 (37.80%), Postives = 96/164 (58.54%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            V+NL GE LT+  V A+A      E+ + A++ V AS   V + + +    YGVTTGFG+  +     ++   LQ+ LIR   +G FG+       LP    RA ML+R+N+L++GYSGIR   +E + +LLN  + P +P +G++ ASGDL PL+++   + G
Sbjct:    4 VINLDGEHLTLEDVIAVARHGATCEIDQEAKKAVEASRKIVDDIVREKRVVYGVTTGFGSLCNVSISPEDTTQLQENLIRTHASG-FGD------PLPEDAVRAIMLIRINSLVKGYSGIRLSTVEKLLELLNKGVVPFIPEKGSLGASGDLAPLAHMVLPMLG 160          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: PALY_USTMA (Phenylalanine ammonia-lyase OS=Ustilago maydis GN=PAL1 PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.802e-21
Identity = 66/193 (34.20%), Postives = 106/193 (54.92%), Query Frame = 1
Query:  304 RMVAEYRKPVVNLGGETLTVAQVAAIATSSTNVELSESA--REGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGI------FGNG-------------TESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKL-LNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            R  + +R   V + G  L +  + A A       L  SA  R+ +  S   ++  +++G   YG+ TGFG ++  RT N  ALQ  L++    G+      F  G             TESS  +P +  R A++VR+++L++G+SG+R+E+L+ + KL L +N+TP +P+R +I+ASGDL PLSY+A  L G
Sbjct:   29 RKASSFRTEQVVIDGYNLKIQGLVASARYGHVPVLDPSAETRKRIDDSVQSLIAKLDRGESIYGINTGFGGSADSRTANTRALQLALLQMQQCGVLPVPSTFPTGEPSSAPFALPLTDTESSLIMPEAWVRGAIVVRLSSLMRGHSGVRWEVLDKMQKLFLQNNVTPVVPVRSSISASGDLSPLSYVAGALAG 221          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_ANADE (Histidine ammonia-lyase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=hutH PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.797e-20
Identity = 61/161 (37.89%), Postives = 85/161 (52.80%), Query Frame = 1
Query:  340 LGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            L GETLT+ QV A+AT +    L+ +ARE V  S   V   +  G   YG+ TGFG  +  R        LQ+ L+    AG+          LP +  RA +L+R N L +G SGIR   LE +  +L   + P +P RG++ ASGDL PL+++A  L G
Sbjct:    6 LDGETLTLEQVRAVATGAARAALAPAARERVRRSRALVDARLEDGEAHYGINTGFGTLAEVRIPRADLERLQRNLVLSHAAGV-------GAPLPLAEARALVLLRANVLAKGVSGIRERTLELLLAMLERGVVPVVPERGSVGASGDLAPLAHLALVLIG 159          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_THETN (Histidine ammonia-lyase OS=Thermoanaerobacter tengcongensis GN=hutH PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.291e-19
Identity = 57/163 (34.97%), Postives = 87/163 (53.37%), Query Frame = 1
Query:  334 VNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHR--RTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            V + G  LT+  V  +A     V LSE A+E +  S   V   + +G   YG+TTGFG  S      ++  ALQK LI   +  +          LP    RA ML+R N L +G+SG+R E +E + +++N N+ P +P +G++ ASGDL PL+++   + G
Sbjct:    4 VVIDGNNLTIEDVVKVARDKWEVVLSEVAKERIVHSREIVDRYVKEGKVVYGITTGFGKFSDVVISKEDTEALQKNLIMSHSCAV-------GDPLPEEVVRAIMLLRANALAKGFSGVRLETVETLIEMINKNVVPVIPEKGSLGASGDLAPLAHMVLVMIG 159          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_HALSA (Probable histidine ammonia-lyase OS=Halobacterium salinarium GN=hutH PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.203e-19
Identity = 62/163 (38.04%), Postives = 90/163 (55.21%), Query Frame = 1
Query:  334 VNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRR--TKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            V + GE+LT A V A+A     V ++  ARE V  S   + + +      YGV TGFG+ S  R    +  ALQ  L+R   AG    G+E    L  +  RA ++ R+N L +GYSGIR  +L+ +  LLN  + P +P RG++ ASGDL PL++++  L G
Sbjct:    6 VVIDGESLTPAAVDAVARHDAPVSIAAGAREAVRESRARIADVLGGDEAVYGVNTGFGSMSDTRIDAADREALQANLVRSHAAGA---GSE----LDTAAVRALLVTRLNALAKGYSGIRERVLDVLVGLLNEGVHPVVPSRGSLGASGDLAPLAHMSRVLIG 161          
The following BLAST results are available for this feature:
BLAST of CK933020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
HUTH_STRP13.631e-2239.02Histidine ammonia-lyase OS=Streptococcus pyogenes ... [more]
HUTH_STRSV6.194e-2237.20Histidine ammonia-lyase OS=Streptococcus sanguinis... [more]
HUTH_STRPZ6.194e-2239.02Histidine ammonia-lyase OS=Streptococcus pyogenes ... [more]
HUTH_STRPG6.194e-2239.02Histidine ammonia-lyase OS=Streptococcus pyogenes ... [more]
HUTH_STRP86.194e-2239.02Histidine ammonia-lyase OS=Streptococcus pyogenes ... [more]
HUTH_STRGC6.194e-2237.80Histidine ammonia-lyase OS=Streptococcus gordonii ... [more]
PALY_USTMA1.802e-2134.20Phenylalanine ammonia-lyase OS=Ustilago maydis GN=... [more]
HUTH_ANADE5.797e-2037.89Histidine ammonia-lyase OS=Anaeromyxobacter dehalo... [more]
HUTH_THETN1.291e-1934.97Histidine ammonia-lyase OS=Thermoanaerobacter teng... [more]
HUTH_HALSA2.203e-1938.04Probable histidine ammonia-lyase OS=Halobacterium ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_E06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933020 ID=CK933020; Name=CK933020; organism=Citrus sinensis; type=EST; length=818bp
GCGGGGAGGAAATCCATTATATTTATAGANNNCAGAATTTCCTTTAGCTC
ATTCATTCTTCATCACTCCCATTCATTCATTCTTCTTCTTCTTCTTCTTT
CTACAGTTTTGGTATTTTTTGTAATTGCAGTAACATTTACGTAAAACGAT
ATGGAGAGAGGTGCCACTACTGAGAATGGTCACCAGAACGGTGGCCTGGA
GGGTTTGTGCAAGAATGACAATTACAATTACAGTTCTGGGGATGCGTTGA
ACTGGGGAGTGATGGCGGAGACGTTGAAGGGGAGCCATTTGGAGGAAGTG
AAGCGTATGGTGGCGGAGTACAGGAAGCCGGTGGTCAACCTCGGTGGTGA
GACGTTGACCGTAGCACAGGTGGCTGCCATTGCCACGTCCTCTACGAATG
TGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCTAGGCCAGCAGTAATTGG
GTGATGGAGAGCATGAATAAGGGTACCGACAGTTACGGCGTTACCACTGG
CTTTGGCGCCACTTCTCATCGGAGAACCAAGAACGGCGGTGCTCTTCAGA
AGGAGCTCATTAGATTTTTGAACGCTGGAATCTTTGGAAACGGAACAGAG
TCATCTCACACGCTACCTCACTCAACAACAAGGGCAGCCATGCTTGTGAG
GGTTAACACTCTTCTCCAGGGCTACTCTGGCATCCGATTTGAAATCCTGG
AAGCGATCACAAAGCTGCTCAATCACAACATCACTCCATGCCTCCCTCTT
CGCGGCACAATCACTGCTTCAGGGGATCTGGTTCCTCTTTCCTACATTGC
CNNNNTGCTCACCGGCCG
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