CK933020

Overview
NameCK933020
Unique NameCK933020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933020_ssr80 microsatellite CK933020_ssr80:80..97. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933020_ssr70 microsatellite CK933020_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10798 contig Csv1_Contig10798:1..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_BACA2 (Histidine ammonia-lyase OS=Bacillus amyloliquefaciens (strain FZB42) GN=hutH PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.426e-18
Identity = 57/164 (34.76%), Postives = 85/164 (51.83%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHR--RTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            +V L G +LT A    +      V+ S  + E V  S   V   + +    YG+TTGFG  S    + ++   LQ  LI     G+           P S +RA +L+R N LL+G+SG+R E+++ +   LNH I P +P +G++ ASGDL PLS++A  L G
Sbjct:    1 MVTLDGSSLTTADAQRVLFDFEEVQASAESMERVKKSRAAVERIVQEEKTIYGITTGFGKFSDVLIQKEDAADLQLNLILSHACGV-------GDPFPESVSRAMLLLRANALLKGFSGVRTELIDQLLAYLNHRIHPVIPQQGSLGASGDLAPLSHLALALIG 157          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_PSYIN (Histidine ammonia-lyase OS=Psychromonas ingrahamii (strain 37) GN=hutH PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.086e-18
Identity = 51/156 (32.69%), Postives = 90/156 (57.69%), Query Frame = 1
Query:  355 LTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            LT++Q+  I+  +  V L  S  E + AS+  V + + +   +YG+ TGFG  ++ R   ++   LQ+ ++    AGI          +   T R  M++++N+L +G+SGIR  ++EA+  L+N  I PC+P +G++ ASGDL PL++++  L G
Sbjct:   11 LTLSQLRKISRHALKVSLESSCIEAIHASTQVVNQVIAENRVAYGINTGFGLLANTRIAPEDLETLQRSIVLSHAAGI-------GELMNDETVRMMMVLKINSLARGFSGIRLSVIEALMTLVNAQIYPCVPKKGSVGASGDLAPLAHMSTVLLG 159          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_CITK8 (Histidine ammonia-lyase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=hutH PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.086e-18
Identity = 52/156 (33.33%), Postives = 89/156 (57.05%), Query Frame = 1
Query:  355 LTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRR--TKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            L+ AQ+ A+      + L  SA +G+ AS + V   + +G  +YG+ TGFG  +  R  T++   LQ+ L+    AGI          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G
Sbjct:   11 LSFAQLRAVWQQPVQLRLDSSAVDGINASVDCVNNIVAEGRTAYGINTGFGLLAQTRIATEDLQNLQRSLVLSHAAGI-------GEPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAEVWPLIPAKGSVGASGDLAPLAHMSLTLLG 159          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_LEGPH (Histidine ammonia-lyase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=hutH PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.209e-17
Identity = 48/154 (31.17%), Postives = 87/154 (56.49%), Query Frame = 1
Query:  355 LTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            L++  +  I     +  L+E++ E + AS   V + +++    YG+ TGFG+ +++   +     KEL R +   +  +   +   LP       +L+++N L QGYSG+R E++ A+  L NH + PC+P +G++ ASGDLVPL++++  L G
Sbjct:   12 LSLLSIKQILDEELSCVLAENSFELIRASHQTVKKVIDEKKTVYGINTGFGSLANQTISSD--CLKELQRNI---VLSHACGTGKLLPDDVVALILLLKINNLSQGYSGVRLELINALIALFNHKVYPCIPSKGSVGASGDLVPLAHLSLPLLG 160          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_BACSU (Histidine ammonia-lyase OS=Bacillus subtilis GN=hutH PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.579e-17
Identity = 57/164 (34.76%), Postives = 83/164 (50.61%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHR--RTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            +V L G +LT A VA +         SE + E V  S   V   +      YG+ TGFG  S    + ++  ALQ  LI     G+           P   +RA +L+R N LL+G+SG+R E++E +   LN  + P +P +G++ ASGDL PLS++A  L G
Sbjct:    1 MVTLDGSSLTTADVARVLFDFEEAAASEESMERVKKSRAAVERIVRDEKTIYGINTGFGKFSDVLIQKEDSAALQLNLILSHACGV-------GDPFPECVSRAMLLLRANALLKGFSGVRAELIEQLLAFLNKRVHPVIPQQGSLGASGDLAPLSHLALALIG 157          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_TREDE (Histidine ammonia-lyase OS=Treponema denticola GN=hutH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.693e-17
Identity = 55/163 (33.74%), Postives = 88/163 (53.99%), Query Frame = 1
Query:  334 VNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRR-TKN-GGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            V + G +LT+  V A+A     V+LS  A++ +  S   V + +  G  +YG++TGFG  S    TK+  GALQ+ LI     G+        +  P    RA ML+R+NT   G+SG+   + + +  +LN  + P +P +G++ ASGDL  L++IA  + G
Sbjct:    6 VTVTGSSLTIEDVVAVARHGAEVKLSADAKKRIKDSKKIVDDIVKSGKPTYGISTGFGELSTVTITKDQNGALQRNLILSHACGV-------GNPFPEDIVRAIMLLRLNTHASGFSGVTPSVPDILVDMLNKGVIPYVPEKGSLGASGDLANLAHIALVMIG 161          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_SHEPW (Histidine ammonia-lyase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=hutH PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.593e-17
Identity = 47/155 (30.32%), Postives = 88/155 (56.77%), Query Frame = 1
Query:  352 TLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXL 810
            +LT+ Q+  I+     +EL++SA   +  S+  V + +++G   YG+ TGFG  ++ +        LQ+ ++    AG       +   +  +T R  M++++N+L +G+SGIR E++  +  L+N  + PC+P +G++ ASGDL PLS++   L
Sbjct:   10 SLTLKQIREISRGKVTLELADSAIADINTSAGLVQQVLDEGRTVYGINTGFGLLANTKIAADDLQLLQRSIVLSHAAG-------TGQYMQDATVRLMMVLKINSLSRGFSGIRLEVINFLIALVNAEVYPCVPEKGSVGASGDLAPLSHMCLPL 157          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_VIBF1 (Histidine ammonia-lyase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=hutH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.999e-17
Identity = 48/156 (30.77%), Postives = 91/156 (58.33%), Query Frame = 1
Query:  355 LTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            L++ Q+  ++   T + L  +A   +  S++ V + + +G   YG+ TGFG  ++ R   K+   LQ+ ++    AGI          +  +T R  M++++N+L +GYSGIR  +++A+ +L+N  + PC+P +G++ ASGDL PL++++  L G
Sbjct:   11 LSLKQLREVSRHPTKLSLDPNALPDMLISADVVAQVIEEGKTVYGINTGFGLLANTRIAEKDLETLQRSIVLSHAAGI-------GEFMDDATVRLMMVLKINSLARGYSGIRPLVIDALIQLVNSEVYPCIPKKGSVGASGDLAPLAHMSTVLLG 159          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_THEAC (Probable histidine ammonia-lyase OS=Thermoplasma acidophilum GN=hutH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.999e-17
Identity = 53/164 (32.32%), Postives = 87/164 (53.05%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGA--TSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            ++ + G +L V  V A+A     V +S+   + V       ++ +N G   YGV TGFG+    H        LQK LIR  ++G+ G+  E+ +       RA M VR+N+L  GYS +  ++L  + ++LN ++ P +P  G++ ASGDL PL++I   + G
Sbjct:    1 MIEIDGRSLRVEDVYAVAVEYDRVSISDDTLKAVEEKHEAFLKLINSGKTVYGVNTGFGSLLNVHIERDQEIELQKNLIRSHSSGV-GDYLENRYV------RAIMAVRLNSLAAGYSAVSADLLNMMVEMLNRDVIPAVPKYGSVGASGDLAPLAHIGLAMMG 157          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_PSEPU (Histidine ammonia-lyase OS=Pseudomonas putida GN=hutH PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 1.023e-16
Identity = 52/157 (33.12%), Postives = 89/157 (56.69%), Query Frame = 1
Query:  352 TLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            TLT+AQ+ AI  +   ++L  SA   + AS   V + + +   +YG+ TGFG  +  R  +     LQ+ L+    AGI          L     R  M++++N+L +G+SGIR ++++A+  L+N  + P +PL+G++ ASGDL PL++++  L G
Sbjct:   10 TLTLAQLRAIHAAPVRLQLDASAAPAIDASVACVEQIIAEDRTAYGINTGFGLLASTRIASHDLENLQRSLVLSHAAGI-------GAPLDDDLVRLIMVLKINSLSRGFSGIRRKVIDALIALVNAEVYPHIPLKGSVGASGDLAPLAHMSLVLLG 159          
The following BLAST results are available for this feature:
BLAST of CK933020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
HUTH_BACA25.426e-1834.76Histidine ammonia-lyase OS=Bacillus amyloliquefaci... [more]
HUTH_PSYIN7.086e-1832.69Histidine ammonia-lyase OS=Psychromonas ingrahamii... [more]
HUTH_CITK87.086e-1833.33Histidine ammonia-lyase OS=Citrobacter koseri (str... [more]
HUTH_LEGPH1.209e-1731.17Histidine ammonia-lyase OS=Legionella pneumophila ... [more]
HUTH_BACSU1.579e-1734.76Histidine ammonia-lyase OS=Bacillus subtilis GN=hu... [more]
HUTH_TREDE2.693e-1733.74Histidine ammonia-lyase OS=Treponema denticola GN=... [more]
HUTH_SHEPW4.593e-1730.32Histidine ammonia-lyase OS=Shewanella piezotoleran... [more]
HUTH_VIBF15.999e-1730.77Histidine ammonia-lyase OS=Vibrio fischeri (strain... [more]
HUTH_THEAC5.999e-1732.32Probable histidine ammonia-lyase OS=Thermoplasma a... [more]
HUTH_PSEPU1.023e-1633.12Histidine ammonia-lyase OS=Pseudomonas putida GN=h... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_E06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933020 ID=CK933020; Name=CK933020; organism=Citrus sinensis; type=EST; length=818bp
GCGGGGAGGAAATCCATTATATTTATAGANNNCAGAATTTCCTTTAGCTC
ATTCATTCTTCATCACTCCCATTCATTCATTCTTCTTCTTCTTCTTCTTT
CTACAGTTTTGGTATTTTTTGTAATTGCAGTAACATTTACGTAAAACGAT
ATGGAGAGAGGTGCCACTACTGAGAATGGTCACCAGAACGGTGGCCTGGA
GGGTTTGTGCAAGAATGACAATTACAATTACAGTTCTGGGGATGCGTTGA
ACTGGGGAGTGATGGCGGAGACGTTGAAGGGGAGCCATTTGGAGGAAGTG
AAGCGTATGGTGGCGGAGTACAGGAAGCCGGTGGTCAACCTCGGTGGTGA
GACGTTGACCGTAGCACAGGTGGCTGCCATTGCCACGTCCTCTACGAATG
TGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCTAGGCCAGCAGTAATTGG
GTGATGGAGAGCATGAATAAGGGTACCGACAGTTACGGCGTTACCACTGG
CTTTGGCGCCACTTCTCATCGGAGAACCAAGAACGGCGGTGCTCTTCAGA
AGGAGCTCATTAGATTTTTGAACGCTGGAATCTTTGGAAACGGAACAGAG
TCATCTCACACGCTACCTCACTCAACAACAAGGGCAGCCATGCTTGTGAG
GGTTAACACTCTTCTCCAGGGCTACTCTGGCATCCGATTTGAAATCCTGG
AAGCGATCACAAAGCTGCTCAATCACAACATCACTCCATGCCTCCCTCTT
CGCGGCACAATCACTGCTTCAGGGGATCTGGTTCCTCTTTCCTACATTGC
CNNNNTGCTCACCGGCCG
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