CK933020

Overview
NameCK933020
Unique NameCK933020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933020_ssr80 microsatellite CK933020_ssr80:80..97. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933020_ssr70 microsatellite CK933020_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10798 contig Csv1_Contig10798:1..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_PSEPK (Histidine ammonia-lyase OS=Pseudomonas putida (strain KT2440) GN=hutH PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.023e-16
Identity = 52/157 (33.12%), Postives = 89/157 (56.69%), Query Frame = 1
Query:  352 TLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            TLT+AQ+ AI  +   ++L  SA   + AS   V + + +   +YG+ TGFG  +  R  +     LQ+ L+    AGI          L     R  M++++N+L +G+SGIR ++++A+  L+N  + P +PL+G++ ASGDL PL++++  L G
Sbjct:   10 TLTLAQLRAIHAAPVRLQLDASAAPAIDASVACVEQIIAEDRTAYGINTGFGLLASTRIASHDLENLQRSLVLSHAAGI-------GAPLDDDLVRLIMVLKINSLSRGFSGIRRKVIDALIALVNAEVYPHIPLKGSVGASGDLAPLAHMSLVLLG 159          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_ALKOO (Histidine ammonia-lyase OS=Alkaliphilus oremlandii (strain OhILAs) GN=hutH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.336e-16
Identity = 55/163 (33.74%), Postives = 82/163 (50.31%), Query Frame = 1
Query:  334 VNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGG--ALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            + + GE LT+  +  +  +   +ELSE A+  V  +   V   + +    YG+TTGFG  S          ALQ+ LI     G+        + L     R  ML+R N L +GYSGIR E L  + ++LN  + P +P +G++ ASGDL PLS++   L G
Sbjct:    4 IMIDGEQLTLQDIIHVTRNFYEIELSEDAKNRVRNNRKVVDRYVEEEKVVYGITTGFGKFSDVVISKSETEALQRNLIISHACGV-------GNPLEEDVVRGIMLLRANALSKGYSGIRLETLSTLIEMLNKGVHPVIPEKGSLGASGDLAPLSHMVLVLIG 159          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_GEOSW (Histidine ammonia-lyase OS=Geobacillus sp. (strain WCH70) GN=hutH PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.745e-16
Identity = 59/164 (35.98%), Postives = 82/164 (50.00%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            +V L G TLT+ +V  +      V  S+ + E V  S   V E +      YG+ TGFG  S      G    LQ  LI     G+           P   +RA +L+R N LL+GYSG+R  ++E +  LLN  I P +P +G++ ASGDL PLS++A  L G
Sbjct:    1 MVVLTGHTLTLEEVKRVLYRDELVIASKESMEAVERSRKAVEEIVANKNVVYGINTGFGKFSDVLIAAGDVEELQWNLIHSHACGV-------GEPFPEEVSRAMLLLRANALLKGYSGVRPIVIERLLDLLNAKIHPVIPQQGSLGASGDLAPLSHLALALLG 157          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_GEOKA (Histidine ammonia-lyase OS=Geobacillus kaustophilus GN=hutH PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.280e-16
Identity = 53/162 (32.72%), Postives = 82/162 (50.62%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            ++ L G TLT+ +V  +      V   E +   V  S   V ++++ G   YGV TGFG  +  R + G  L++  I  L +     G            RA +L+R N LL+GYSG+R  ++E +   LN  I P +P +G++ ASGDL PL+++A    G
Sbjct:    1 MIVLTGHTLTIDEVRRVVYERERVAADEESMRAVEKSRAAVEQAISNGRTIYGVNTGFGKLADVRIE-GSDLEQLQINLLRSHACAVG----EPFAEDVVRAMLLLRANALLKGYSGVRPAVIEQLLAFLNTGIHPIVPQQGSLGASGDLAPLAHLALAFAG 157          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_CHRVO (Histidine ammonia-lyase OS=Chromobacterium violaceum GN=hutH PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.280e-16
Identity = 51/165 (30.91%), Postives = 93/165 (56.36%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSS-TNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFG--ATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            ++N+    LT+A++  ++  +   ++L  S+   + AS+  V   +++G   YG+ TGFG  A++    +    LQ+ ++    AGI          +  ST R  M +++N+L +G+SGIR +++EA+  L N  I P +P +G++ ASGDL PLS+++  L G
Sbjct:    3 ILNIVPGRLTLAELRRVSRETGLQLQLDPSSHAAIDASAATVARVLSEGRTVYGINTGFGLLASTKIAPEELELLQRSIVLSHAAGI-------GAPMDDSTVRLVMALKINSLARGFSGIRRQVIEALVTLFNRQIYPVIPQKGSVGASGDLAPLSHMSAVLIG 160          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_SHEON (Histidine ammonia-lyase OS=Shewanella oneidensis GN=hutH PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.977e-16
Identity = 45/156 (28.85%), Postives = 88/156 (56.41%), Query Frame = 1
Query:  352 TLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGI-FGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            +L++AQ+  I+     +EL+  A   +  S+  V + +++G   YG+ TGFG  ++ +      +  E ++ L   I   +   +   +  +T R  M++++N+L +G+SGIR E++  +  L+N  + PC+P +G++ ASGDL PL+++   L G
Sbjct:   13 SLSLAQLREISRHKLTLELAPEAINDINISAQIVQKVLDEGRTVYGINTGFGLLANTK------IAPEDLQLLQRSIVLSHAAGTGQYMQDATVRLMMVLKINSLSRGFSGIRLEVINFLISLVNAEVYPCVPEKGSVGASGDLAPLAHMCLPLLG 162          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_PSEFS (Histidine ammonia-lyase OS=Pseudomonas fluorescens (strain SBW25) GN=hutH PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.977e-16
Identity = 51/163 (31.29%), Postives = 91/163 (55.83%), Query Frame = 1
Query:  334 VNLGGETLTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            +NL    L++AQ+ AI      + L +SA   + AS   V + + +   +YG+ TGFG  +  R  +     LQ+ L+    AG+          +  +  R  M+++VN+L +G+SGIR ++++A+  L+N  + P +PL+G++ ASGDL PL++++  L G
Sbjct:    6 LNLIPGQLSLAQLRAIYQQPVTLRLDDSATAQIEASVACVEQILAENRTAYGINTGFGLLASTRIASEDLENLQRSLVLSHAAGV-------GEPISDALVRLVMVLKVNSLSRGFSGIRRQVIDALIALINAEVYPHIPLKGSVGASGDLAPLAHMSLVLLG 161          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_BURS3 (Histidine ammonia-lyase OS=Burkholderia sp. (strain 383) GN=hutH PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.977e-16
Identity = 50/156 (32.05%), Postives = 88/156 (56.41%), Query Frame = 1
Query:  355 LTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFG--ATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            LT+ Q+  IA  S  + L  ++   + A +  V +   KG  +YG+ TGFG  A++H        LQK L+     G+          +  S+ R  M +++++L +G+SGIR E+++A+ KL N ++ P +P++G++ ASGDL PL++++  L G
Sbjct:    9 LTLPQLRQIARESVQLTLDPASFAKIDAGAKAVADIAAKGEPAYGINTGFGRLASTHIPHDQLELLQKNLVLSHAVGV-------GEPMARSSVRLLMALKLSSLGRGHSGIRREVMDALIKLFNADVLPLIPVKGSVGASGDLAPLAHMSAVLLG 157          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_SALTY (Histidine ammonia-lyase OS=Salmonella typhimurium GN=hutH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.888e-16
Identity = 49/156 (31.41%), Postives = 87/156 (55.77%), Query Frame = 1
Query:  355 LTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            L+++Q+  I      + L  SA +G+ AS   V + + +G  +YG+ TGFG  +  R  +     LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G
Sbjct:   11 LSLSQLYDIWRHPVQLRLDASAIDGINASVACVNDIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLG 159          
BLAST of CK933020 vs. ExPASy Swiss-Prot
Match: HUTH_SALPB (Histidine ammonia-lyase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=hutH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.888e-16
Identity = 49/156 (31.41%), Postives = 87/156 (55.77%), Query Frame = 1
Query:  355 LTVAQVAAIATSSTNVELSESAREGV*ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAXXLTG 816
            L+++Q+  I      + L  SA +G+ AS   V + + +G  +YG+ TGFG  +  R  +     LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G
Sbjct:   11 LSLSQLYDIWRHPVQLRLDASAIDGINASVACVNDIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLG 159          
The following BLAST results are available for this feature:
BLAST of CK933020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
HUTH_PSEPK1.023e-1633.12Histidine ammonia-lyase OS=Pseudomonas putida (str... [more]
HUTH_ALKOO1.336e-1633.74Histidine ammonia-lyase OS=Alkaliphilus oremlandii... [more]
HUTH_GEOSW1.745e-1635.98Histidine ammonia-lyase OS=Geobacillus sp. (strain... [more]
HUTH_GEOKA2.280e-1632.72Histidine ammonia-lyase OS=Geobacillus kaustophilu... [more]
HUTH_CHRVO2.280e-1630.91Histidine ammonia-lyase OS=Chromobacterium violace... [more]
HUTH_SHEON2.977e-1628.85Histidine ammonia-lyase OS=Shewanella oneidensis G... [more]
HUTH_PSEFS2.977e-1631.29Histidine ammonia-lyase OS=Pseudomonas fluorescens... [more]
HUTH_BURS32.977e-1632.05Histidine ammonia-lyase OS=Burkholderia sp. (strai... [more]
HUTH_SALTY3.888e-1631.41Histidine ammonia-lyase OS=Salmonella typhimurium ... [more]
HUTH_SALPB3.888e-1631.41Histidine ammonia-lyase OS=Salmonella paratyphi B ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_E06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933020 ID=CK933020; Name=CK933020; organism=Citrus sinensis; type=EST; length=818bp
GCGGGGAGGAAATCCATTATATTTATAGANNNCAGAATTTCCTTTAGCTC
ATTCATTCTTCATCACTCCCATTCATTCATTCTTCTTCTTCTTCTTCTTT
CTACAGTTTTGGTATTTTTTGTAATTGCAGTAACATTTACGTAAAACGAT
ATGGAGAGAGGTGCCACTACTGAGAATGGTCACCAGAACGGTGGCCTGGA
GGGTTTGTGCAAGAATGACAATTACAATTACAGTTCTGGGGATGCGTTGA
ACTGGGGAGTGATGGCGGAGACGTTGAAGGGGAGCCATTTGGAGGAAGTG
AAGCGTATGGTGGCGGAGTACAGGAAGCCGGTGGTCAACCTCGGTGGTGA
GACGTTGACCGTAGCACAGGTGGCTGCCATTGCCACGTCCTCTACGAATG
TGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCTAGGCCAGCAGTAATTGG
GTGATGGAGAGCATGAATAAGGGTACCGACAGTTACGGCGTTACCACTGG
CTTTGGCGCCACTTCTCATCGGAGAACCAAGAACGGCGGTGCTCTTCAGA
AGGAGCTCATTAGATTTTTGAACGCTGGAATCTTTGGAAACGGAACAGAG
TCATCTCACACGCTACCTCACTCAACAACAAGGGCAGCCATGCTTGTGAG
GGTTAACACTCTTCTCCAGGGCTACTCTGGCATCCGATTTGAAATCCTGG
AAGCGATCACAAAGCTGCTCAATCACAACATCACTCCATGCCTCCCTCTT
CGCGGCACAATCACTGCTTCAGGGGATCTGGTTCCTCTTTCCTACATTGC
CNNNNTGCTCACCGGCCG
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