CK933023

Overview
NameCK933023
Unique NameCK933023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7013 contig Csv1_Contig7013:1..767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_NEUCR (60S ribosomal protein L3 OS=Neurospora crassa GN=rpl-3 PE=3 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.193e-82
Identity = 147/241 (61.00%), Postives = 184/241 (76.35%), Query Frame = 2
Query:   56 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 778
            MSHRK+E PRHGSL +LPRKRAARHRGKVK+FPKDD  KP  LTA +GYKAGMT IVRD+++PG+K HKKE  EAVTII+T          Y++TPRGLRSL TVWA+HLS+EV+RRFYKNW             ++  + G  +I  +LE+IKKY +VVRVLAHTQIRK   LKQKKAHLMEIQ+NGG++A+KV++ +G FEK + +D++F+KDE+ID+I VTKG G+ GV  RWG  +L
Sbjct:    1 MSHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDAKKPVHLTAAMGYKAGMTTIVRDLDRPGAKAHKKEVVEAVTIIDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYVKKHSDNNG-AAITRELERIKKYCTVVRVLAHTQIRKTP-LKQKKAHLMEIQINGGSVADKVEFGHGLFEKPVSIDSIFEKDEVIDVIAVTKGHGFTGVTARWGTKKL 239          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_DICDI (60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1 SV=2)

HSP 1 Score: 303.908 bits (777), Expect = 6.380e-82
Identity = 151/242 (62.40%), Postives = 184/242 (76.03%), Query Frame = 2
Query:   56 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWC-XXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 778
            MSHRKFE PRHG+LGF PRKRAARH+GKVK+FPKDD ++   LTAF+GYKAGMTH+VRD+EKPGSK+HKKE  EAVTIIE           YV+T +GL++  TVWAQHLS+  RRR YKNW              QYET+EGKKSI+A L+ IKK  SVVRV+AHTQ+ K+K L QKKAH++EIQVNGG+I EKV++A   FEK + V  VF ++E+ID+IGVTKGKG+ GV+ RWGV +L
Sbjct:    1 MSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGMTHVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQHLSDNFRRRLYKNWYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQVHKLK-LTQKKAHVLEIQVNGGSIVEKVNFAVANFEKTVNVTGVFAENELIDVIGVTKGKGFNGVIKRWGVRKL 241          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2)

HSP 1 Score: 303.523 bits (776), Expect = 8.333e-82
Identity = 144/241 (59.75%), Postives = 182/241 (75.52%), Query Frame = 2
Query:   56 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 778
            MSHRKF  PRHGS+GF P+KR+ RHRGKVKAFPKDDP+KP  LTAF+ +KAGMTHIVR+V+KPGSK++KKE  EAVTI E           Y+ TPRG R   TVWA+HLSE+ R RFYKNW             +++ ++G+KSI+A L K+KKY S +RV+AHTQ++ MK  ++KKAH+MEIQ+NGGT+AEKVD+A    EKQ+PVD+VF +DEMID IGVTKGKG++GV +RW   +L
Sbjct:    1 MSHRKFSAPRHGSMGFTPKKRSKRHRGKVKAFPKDDPTKPIHLTAFIAFKAGMTHIVREVDKPGSKVNKKEVVEAVTIFEAPPMVIVGIVGYIDTPRGPRQFKTVWAEHLSEDCRGRFYKNWHTSKKKAFQKHAKKWQDEDGRKSIEADLNKMKKYCSKIRVIAHTQMKVMKH-REKKAHIMEIQINGGTVAEKVDWAREHLEKQVPVDSVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKL 240          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_BOVIN (60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2)

HSP 1 Score: 303.138 bits (775), Expect = 1.088e-81
Identity = 144/241 (59.75%), Postives = 184/241 (76.35%), Query Frame = 2
Query:   56 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 778
            MSHRKF  PRHGSLGFLPRKR++RHRGKVK+FPKDD SKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+ET          YV+TPRGLR+  T++A+H+S+E +RRFYKNW             +++  +GKK ++     +KKY  V+RV+AHTQ+R +  L+QKKAHLME+QVNGGT+AEK+D+A    E+Q+PV  VF +DEMID+IGVTKGKGY+GV +RW   +L
Sbjct:    1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHTQMRLLP-LRQKKAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_DEBHA (60S ribosomal protein L3 OS=Debaryomyces hansenii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 7.799e-80
Identity = 147/241 (61.00%), Postives = 181/241 (75.10%), Query Frame = 2
Query:   56 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 778
            MSHRK+E PRHGSLGFLPRKR+A  RG+VK+FPKD  SKP  LTAFLGYKAGMT +VRD+++PGSK+HK+E  EA T+++T          YV+TPRGLRSL TVWA+HLSEEVRRRFYKNW             +Y  D  +  ++ +L +IKKYASVVRVLAHTQI+K   L QKKAHL EIQVNGG++++KVD+A   FEK + VD+VF+KDEM+D+  VTKG G+EGV  RWG  +L
Sbjct:    1 MSHRKYEAPRHGSLGFLPRKRSANIRGRVKSFPKDVKSKPVALTAFLGYKAGMTTVVRDLDRPGSKMHKREIVEAATVVDTPPLVVVGVVGYVETPRGLRSLTTVWAEHLSEEVRRRFYKNWYKSKKKAFTKYSAKYAQDGAQ--VERELARIKKYASVVRVLAHTQIKKTP-LAQKKAHLAEIQVNGGSVSDKVDWAKEHFEKTVSVDSVFEKDEMVDVAAVTKGHGFEGVTHRWGTKKL 238          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_YEAST (60S ribosomal protein L3 OS=Saccharomyces cerevisiae GN=RPL3 PE=1 SV=4)

HSP 1 Score: 293.123 bits (749), Expect = 1.126e-78
Identity = 149/241 (61.83%), Postives = 178/241 (73.86%), Query Frame = 2
Query:   56 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 778
            MSHRK+E PRHG LGFLPRKRAA  R +VKAFPKDD SKP  LT+FLGYKAGMT IVRD+++PGSK HK+E  EAVT+++T          YV+TPRGLRSL TVWA+HLS+EV+RRFYKNW             +Y  D     I+ +L +IKKYASVVRVL HTQIRK   L QKKAHL EIQ+NGG+I+EKVD+A   FEK + VD+VF+++EMID I VTKG G+EGV  RWG  +L
Sbjct:    1 MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYAQDGA--GIERELARIKKYASVVRVLVHTQIRKTP-LAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKL 238          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_ASHGO (60S ribosomal protein L3 OS=Ashbya gossypii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.126e-78
Identity = 145/241 (60.17%), Postives = 181/241 (75.10%), Query Frame = 2
Query:   56 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 778
            MSHRK+E PRHG LGFLPRKRAA  RG+VKAFPKDD SKP  LT+FLGYKAGMT IVRD+++PGSK HK+E  EAV++++T          Y++TPRGLRSL TVWA+HLS+E++RRFYKNW                  +G  +I+ +L +IKKYASVVRVLAHTQ+RK   L QKKAHL EIQ+NGG+++EKVD+A   FEK + VD+VF+++EMID+I VTKG G+EGV  RWG  +L
Sbjct:    1 MSHRKYEAPRHGHLGFLPRKRAASIRGRVKAFPKDDKSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREIVEAVSVVDTPPMVVVGVVGYIETPRGLRSLTTVWAEHLSDEIKRRFYKNWYKSKKKAFTQVPPPSTAQDG-AAIERELARIKKYASVVRVLAHTQVRKTP-LVQKKAHLAEIQLNGGSVSEKVDWAREHFEKTVSVDSVFEQNEMIDVIAVTKGHGFEGVTHRWGTKKL 239          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_CAEEL (60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=1 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.921e-78
Identity = 140/241 (58.09%), Postives = 178/241 (73.86%), Query Frame = 2
Query:   56 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 778
            MSHRKF  PRHG +GF P+KR+  +RG++KAFPKDD SKP  LTAFLGYKAGMTHIVRDV+KPGSK++KKE  EAVTI+ET          YV TP+G R+L T+WA+HLSEE RRRFY NW             +++ ++GKK I+A   K+KKY S +RV+AHTQ++ ++  +QKKAHL+EIQVNGGTI +KVD+A    EKQ+ VD VF +DEMID IGVT+G G++GV +RW   +L
Sbjct:    1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILR-RRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKL 240          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_CAEBR (60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3 SV=2)

HSP 1 Score: 292.352 bits (747), Expect = 1.921e-78
Identity = 140/241 (58.09%), Postives = 178/241 (73.86%), Query Frame = 2
Query:   56 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 778
            MSHRKF  PRHG +GF P+KR+  +RG++KAFPKDD SKP  LTAFLGYKAGMTHIVRDV+KPGSK++KKE  EAV+IIET          Y+ TP+G R+L T+WA+HLSEE RRRFY NW             +++ ++GKK I+A   K+KKY S +RV+AHTQ++ ++  +QKKAHL+EIQ+NGGTI +KVD+A    EKQI VD VF +DEMID IGVTKG G++GV +RW   +L
Sbjct:    1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDASKPIHLTAFLGYKAGMTHIVRDVDKPGSKVNKKEVVEAVSIIETPPMVIAGVTGYIDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILR-RRQKKAHLVEIQINGGTIEQKVDWAREHLEKQIQVDTVFSQDEMIDTIGVTKGHGFKGVTSRWHTKKL 240          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_CANGA (60S ribosomal protein L3 OS=Candida glabrata GN=RPL3 PE=3 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 5.589e-78
Identity = 146/241 (60.58%), Postives = 179/241 (74.27%), Query Frame = 2
Query:   56 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 778
            MSHRK+E PRHG LGFLPRKRAA  RG+VK+FPKDD SKP  LT+FLGYKAGMT IVRD+++PGSK HK+E  EAVT+++T          YV+TPRGLRSL TVWA+HLS+EV+RRFYKNW             +Y   +    I+ +L +IKKYA+VVRVL HTQ+RK   L QKKAHL EIQ+NGG+I+EKVD+A   FEK + VD+VF+++EMID I VTKG G+EGV  RWG  +L
Sbjct:    1 MSHRKYEAPRHGHLGFLPRKRAASVRGRVKSFPKDDKSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREIVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYA--QNGAEIERELARIKKYATVVRVLVHTQVRKTP-LVQKKAHLAEIQLNGGSISEKVDWAREHFEKTVSVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKL 238          
The following BLAST results are available for this feature:
BLAST of CK933023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
RL3_NEUCR2.193e-8261.0060S ribosomal protein L3 OS=Neurospora crassa GN=r... [more]
RL3_DICDI6.380e-8262.4060S ribosomal protein L3 OS=Dictyostelium discoide... [more]
RL3_TOXCA8.333e-8259.7560S ribosomal protein L3 OS=Toxocara canis GN=RPL3... [more]
RL3_BOVIN1.088e-8159.7560S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=... [more]
RL3_DEBHA7.799e-8061.0060S ribosomal protein L3 OS=Debaryomyces hansenii ... [more]
RL3_YEAST1.126e-7861.8360S ribosomal protein L3 OS=Saccharomyces cerevisi... [more]
RL3_ASHGO1.126e-7860.1760S ribosomal protein L3 OS=Ashbya gossypii GN=RPL... [more]
RL3_CAEEL1.921e-7858.0960S ribosomal protein L3 OS=Caenorhabditis elegans... [more]
RL3_CAEBR1.921e-7858.0960S ribosomal protein L3 OS=Caenorhabditis briggsa... [more]
RL3_CANGA5.589e-7860.5860S ribosomal protein L3 OS=Candida glabrata GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_E09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933023 ID=CK933023; Name=CK933023; organism=Citrus sinensis; type=EST; length=780bp
GGGGCCAGCTCTAGACCATAACGAGTCAGTCGCCGCAGCAGCTCAGAGGA
GGAGAATGTCTCACAGGAAGTTTGAGCACCCAAGGCATGGTTCCCTTGGA
TTTCTTCCAAGGAAGAGAGCTGCTCGTCACAGAGGAAAGGTGAAGGCTTT
TCCCAAGGATGACCCAAGCAAGCCTTGCAGGCTCACTGCCTTTTTGGGTT
ACAAGGCTGGGATGACCCACATTGTTAGGGATGTCGAGAAACCTGGATCT
AAGCTTCACAAGAAGGAGACCTGTGAGGCTGTTACCATTATTGAAACCCC
TCCAATGATGGTGGTTGGAGTTGTGGGATATGTGAAGACACCTCGTGGTC
TTCGCTCTTTGAACACTGTATGGGCTCAGCATCTTAGTGAGGAGGTGAGA
AGAAGGTTCTACAAGAACTGGTGCAAATCCAAGAAGAAGGCTTTCACAAA
ATACTCAAAGCAGTATGAGACAGATGAAGGGAAGAAAAGTATCCAAGCTC
AGCTGGAGAAGATCAAGAAGTATGCATCTGTTGTTCGTGTTCTTGCTCAC
ACTCAGATTAGGAAAATGAAGGGTTTGAAGCAGAAGAAGGCACACCTGAT
GGAAATCCAGGTCAATGGTGGCACCATTGCTGAAAAAGTTGACTATGCAT
ATGGCTTCTTTGAAAAGCAAATTCCTGTTGATGCTGTTTTCCAGAAGGAT
GAGATGATTGACATCATCGGTGTCACGAAAGGTAAAGGTTATGAAGGTGT
TGTCACCCGTTGGGGTGTTACCCGCCTTCC
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