CK933023

Overview
NameCK933023
Unique NameCK933023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7013 contig Csv1_Contig7013:1..767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_STAMF (50S ribosomal protein L3P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.965e-26
Identity = 85/285 (29.82%), Postives = 139/285 (48.77%), Query Frame = 2
Query:   56 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFP------------------KDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP-RGLRSLNTVWAQHL--------------------SEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIK-KYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 778
            M HRK+  PRHGSLG  PRKRAA+   +++++P                  K    KP  L  ++ YKAGM+H +   ++P +    KE    VT+++           Y   P  GL S   VW   +                    ++++ R++ K               +  ++ G K ++     +LE++K    + +RV+A T I  + G+ +KK  ++EI++ GGT++E++DYA       + VD VF++ + IDIIGVTKGKG++GV+ R+GV  L
Sbjct:    1 MGHRKYSAPRHGSLGVRPRKRAAKIVPRIRSWPTQSWFDLLVEKLGDEAVNKGIAPKPV-LLGYVAYKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILILGLRGYKIHPMHGLLSFGEVWRSPVEALKELYEKIYSDNPFINLGAKDIVRKYLKG---LRKVNPGLVKPEPHSEYGFKFLENNWKEKLERLKAAELADIRVIAST-IPVLSGIGKKKPEIIEIKIGGGTLSERIDYAEKLLGNYVTVDQVFREGQFIDIIGVTKGKGFQGVIKRFGVKEL 280          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_SULSO (50S ribosomal protein L3P OS=Sulfolobus solfataricus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.485e-26
Identity = 79/251 (31.47%), Postives = 122/251 (48.61%), Query Frame = 2
Query:   56 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWAQHLSE--EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 778
            M HRK   PR GS G  PRKR++      + +P+ +   P +L  F+GYK GMTH+    + P S  + KE    VT++E           Y    +G  ++ T  W+    +  ++ RR +                  + DE KK        +L+ IK     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  L
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSQNP-KLLGFVGYKVGMTHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAIDGKGEPNVITEYWSSSSLQFLDITRRIHS------------ISSFLKDDESKKKFDERFNTKLDLIKSNLDRIVYFRLLVSTQPRKIPSLGKKAPDLVEIQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVEL 238          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_METTP (50S ribosomal protein L3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.485e-26
Identity = 70/230 (30.43%), Postives = 115/230 (50.00%), Query Frame = 2
Query:   80 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 769
            PR GSL F PRKRA     +++++  D+ +    +  F GYKAGMTH++   ++P S     E    VT++E           Y     G+R    +WA++LS+++ R                   +       + I+++++++ +    +RVLAHT  R + G+ +K   +MEI V G ++ E++  A G    Q+ V  +F   E ID+  VTKGKG +G V RWG+
Sbjct:    7 PRRGSLAFSPRKRAKSEVPRIRSWVADERAG---MAGFAGYKAGMTHVIMIDDRPRSLTEGMEISVPVTVVEVPPMSVAALRVYEPYNGGIRPAGELWAENLSQDLERAI--------------TIPKARRGASLEDIESRVDELCE----IRVLAHTNPRLLTGVPKKVPDIMEIPVTGRSVEEQLKAAEGLLGSQVAVSNIFNVGEWIDVSAVTKGKGTQGPVKRWGI 215          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_THEGJ (50S ribosomal protein L3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.469e-26
Identity = 84/239 (35.15%), Postives = 114/239 (47.70%), Query Frame = 2
Query:   68 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFY---KNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVV--RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 769
            K   PR GSL F PRKRA     ++K +PKD      R+  F GYKAGMTHI+   + PG     KE    VTI+E           Y +   GL +   VW   L++ V+RR     KN+                 +E  K+   QLE +     +V  R+L HTQ   +K   +KK  +ME  + G  +  K +YA     K+I    V  + E++D+I VTKGKG +G V RWGV
Sbjct:    3 KVHRPRRGSLAFSPRKRARSVVPRIKKWPKDSE---VRMLGFAGYKAGMTHILMIDDSPGLT-KGKEIFVPVTIVEVPPLFVYGIRAYKQGYLGLETATEVWFHELNDNVKRRIKTLPKNY----------------GEEDFKAKLGQLEDLVNDGEIVDVRLLVHTQPWLIK--LKKKPEVMEYAIGGDDVKAKFEYAKERIGKEIRASEVLHEGELLDVIAVTKGKGTQGPVKRWGV 219          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_PYRIL (50S ribosomal protein L3P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.469e-26
Identity = 80/243 (32.92%), Postives = 120/243 (49.38%), Query Frame = 2
Query:   68 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG--LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV---VRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 778
            K   PR GS+G  PRKRAA    +V+ +P+ +  KP  L  F  YKAGM H V   ++P S L+ KE  +AVT+++           Y   P     RS+  VWA  L   +RR                      T   K  +  Q++K++++  V   VR L  TQ   + G+ +K   L+EI + G  ++ E++ +A     K +    VF   +++D+I VTKGKGY+GV+ R+GVT L
Sbjct:    8 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPT-LLGFAAYKAGMLHAVVVEDRPTSPLYGKEVVKAVTVLDAPPLFIWGFRLYTLDPTNGYKRSIAEVWAPELPAYLRRVL--------------------TLPEKVDVDKQMKKVEEFKDVAVDVRALVATQPH-LSGIGKKTPELLEIPIGGVPSVDERIKFAVSLLGKTVSPKEVFTAGQLVDVIAVTKGKGYQGVIKRFGVTIL 228          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_THENV (50S ribosomal protein L3P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.445e-25
Identity = 79/243 (32.51%), Postives = 118/243 (48.56%), Query Frame = 2
Query:   68 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG--LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV---VRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 778
            K   PR GS+G  PRKRAA    +V+ +P+ +  KP  L  F  YKAGM H V   ++P S L+ KE    VT+++           Y   P     RS+  VWA  L   +RR                      T   K  +  Q++K++++  V   VR L  TQ   + G+ +K   L+EI + G  ++ E++ +A     K +    VF   +++D+I VTKGKGY+GV+ R+GVT L
Sbjct:    4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPA-LLGFAAYKAGMLHAVVVEDRPTSPLYGKEVVRPVTVLDAPPLFIWGFRLYTLDPTNGYRRSIAEVWAPELPAYIRRVL--------------------TLPEKADVDKQMKKVEEFKDVAVDVRALVATQPH-LSGIGKKTPELLEIPIGGVPSVDERIKFAVSLLGKTVSPKEVFTAGQLVDVIAVTKGKGYQGVIKRFGVTIL 224          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_SULIA (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.445e-25
Identity = 80/253 (31.62%), Postives = 125/253 (49.41%), Query Frame = 2
Query:   56 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWA----QHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 778
            M HRK   PR GS G  PRKR++      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E           Y    +G  ++ T  W+    Q L    R R + ++               + DE KK  +    ++L+ IK     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  L
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIRSFSSFL--------------KNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVEL 238          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_SULIY (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.887e-25
Identity = 78/251 (31.08%), Postives = 124/251 (49.40%), Query Frame = 2
Query:   56 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWAQHLSE--EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 778
            M HRK   PR GS G  PRKR++      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E           Y    +G  ++ T  W+    +  ++ RR +                  + DE KK  +    ++L+ IK     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  L
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------LSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVEL 238          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_SULIN (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.887e-25
Identity = 78/251 (31.08%), Postives = 124/251 (49.40%), Query Frame = 2
Query:   56 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWAQHLSE--EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 778
            M HRK   PR GS G  PRKR++      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E           Y    +G  ++ T  W+    +  ++ RR +                  + DE KK  +    ++L+ IK     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  L
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------LSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVEL 238          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_SULIM (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.887e-25
Identity = 78/251 (31.08%), Postives = 124/251 (49.40%), Query Frame = 2
Query:   56 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWAQHLSE--EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 778
            M HRK   PR GS G  PRKR++      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E           Y    +G  ++ T  W+    +  ++ RR +                  + DE KK  +    ++L+ IK     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  L
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------FSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVEL 238          
The following BLAST results are available for this feature:
BLAST of CK933023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
RL3_STAMF4.965e-2629.8250S ribosomal protein L3P OS=Staphylothermus marin... [more]
RL3_SULSO6.485e-2631.4750S ribosomal protein L3P OS=Sulfolobus solfataric... [more]
RL3_METTP6.485e-2630.4350S ribosomal protein L3P OS=Methanosaeta thermoph... [more]
RL3_THEGJ8.469e-2635.1550S ribosomal protein L3P OS=Thermococcus gammatol... [more]
RL3_PYRIL8.469e-2632.9250S ribosomal protein L3P OS=Pyrobaculum islandicu... [more]
RL3_THENV1.445e-2532.5150S ribosomal protein L3P OS=Thermoproteus neutrop... [more]
RL3_SULIA1.445e-2531.6250S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIY1.887e-2531.0850S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIN1.887e-2531.0850S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIM1.887e-2531.0850S ribosomal protein L3P OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_E09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933023 ID=CK933023; Name=CK933023; organism=Citrus sinensis; type=EST; length=780bp
GGGGCCAGCTCTAGACCATAACGAGTCAGTCGCCGCAGCAGCTCAGAGGA
GGAGAATGTCTCACAGGAAGTTTGAGCACCCAAGGCATGGTTCCCTTGGA
TTTCTTCCAAGGAAGAGAGCTGCTCGTCACAGAGGAAAGGTGAAGGCTTT
TCCCAAGGATGACCCAAGCAAGCCTTGCAGGCTCACTGCCTTTTTGGGTT
ACAAGGCTGGGATGACCCACATTGTTAGGGATGTCGAGAAACCTGGATCT
AAGCTTCACAAGAAGGAGACCTGTGAGGCTGTTACCATTATTGAAACCCC
TCCAATGATGGTGGTTGGAGTTGTGGGATATGTGAAGACACCTCGTGGTC
TTCGCTCTTTGAACACTGTATGGGCTCAGCATCTTAGTGAGGAGGTGAGA
AGAAGGTTCTACAAGAACTGGTGCAAATCCAAGAAGAAGGCTTTCACAAA
ATACTCAAAGCAGTATGAGACAGATGAAGGGAAGAAAAGTATCCAAGCTC
AGCTGGAGAAGATCAAGAAGTATGCATCTGTTGTTCGTGTTCTTGCTCAC
ACTCAGATTAGGAAAATGAAGGGTTTGAAGCAGAAGAAGGCACACCTGAT
GGAAATCCAGGTCAATGGTGGCACCATTGCTGAAAAAGTTGACTATGCAT
ATGGCTTCTTTGAAAAGCAAATTCCTGTTGATGCTGTTTTCCAGAAGGAT
GAGATGATTGACATCATCGGTGTCACGAAAGGTAAAGGTTATGAAGGTGT
TGTCACCCGTTGGGGTGTTACCCGCCTTCC
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