CK933023

Overview
NameCK933023
Unique NameCK933023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7013 contig Csv1_Contig7013:1..767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_SULIL (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.887e-25
Identity = 78/251 (31.08%), Postives = 124/251 (49.40%), Query Frame = 2
Query:   56 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWAQHLSE--EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 778
            M HRK   PR GS G  PRKR++      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E           Y    +G  ++ T  W+    +  ++ RR +                  + DE KK  +    ++L+ IK     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  L
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------LSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVEL 238          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_SULIK (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.887e-25
Identity = 78/251 (31.08%), Postives = 124/251 (49.40%), Query Frame = 2
Query:   56 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWAQHLSE--EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 778
            M HRK   PR GS G  PRKR++      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E           Y    +G  ++ T  W+    +  ++ RR +                  + DE KK  +    ++L+ IK     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  L
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------FSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVEL 238          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_CALMQ (50S ribosomal protein L3P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.887e-25
Identity = 79/240 (32.92%), Postives = 123/240 (51.25%), Query Frame = 2
Query:   68 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP--RGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 778
            K   PR GS+ + PRKRA+    +++ +P  D  KP  L  F+GYKAGM H+    ++  S    KE  +AVT++ET          Y   P    L S+   W  ++  EVR+   +               +++TD+    +Q  L+ +    S ++V+A TQ  K  G+ +K   ++EI V G  TI E+  YA G   K++    VF+  +++D+IGVTKGKG +GV+ R+GV  L
Sbjct:    4 KIHRPRRGSMAYYPRKRASDIVPRIRNWPVIDLGKPT-LLGFVGYKAGMVHVTVVDDRKTSPFFGKELVKAVTVVETPPLYVVGLRAYAINPLKAELVSVGEAWV-NIPNEVRKYIARR--------IPTLPEKFDTDKALADLQGLLDSV----SYIKVIAMTQPYKA-GVGKKTPEVLEIPVGGVPTIDEQFKYASGLLGKEVKPTDVFKPGQLVDVIGVTKGKGTQGVIKRFGVKEL 228          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_PYRAE (50S ribosomal protein L3P OS=Pyrobaculum aerophilum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.464e-25
Identity = 79/243 (32.51%), Postives = 121/243 (49.79%), Query Frame = 2
Query:   68 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG--LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV---VRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 778
            K   PR GS+G  PRKRAA    +V+ +P+ +  KP  L  F  YKAGM H V   ++P S L+ KE  +AVT+++           Y   P     R++  VWA  L + + R                      T   K  +  QL+K++++  V   VR L  TQ   + G+ +K   L+EI + G  ++ E++++A     K +    VF   +++D+I VTKGKGY+GV+ R+GVT L
Sbjct:    4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPA-LLGFAAYKAGMLHAVVVDDRPTSPLYGKEVVKAVTVLDAPPLYVWGFRLYTLDPTNGYKRAVAEVWASELPKFLHRVL--------------------TLPEKLDVDKQLKKVEEFRDVAVDVRALVATQPH-LSGIGKKTPELLEIPIGGVPSVDERINFAISLLGKTVSPKDVFTPGQLVDVIAVTKGKGYQGVIKRFGVTIL 224          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_METS3 (50S ribosomal protein L3P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.464e-25
Identity = 73/235 (31.06%), Postives = 114/235 (48.51%), Query Frame = 2
Query:   68 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTH-IVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 769
            +   PR GS+ F PRKRAA+   ++K++P++D  K   L    GYK GMTH +V D +K  S  +  +    VT++E           Y KT RGL+ +  V A +L EE+ R+                  +Y   E    IQ  L+K +     ++VL HT   K+  + +KK  + E  + G    EK++ A      ++    +  + + +D I  TKGKG++GVV RWG+
Sbjct:    3 RHHQPRKGSVAFSPRKRAAKETPRIKSWPQNDEPK---LLGLAGYKVGMTHALVTDSDK-NSPTNGMDVFTPVTVLEVPPVVVMGIRAYEKTSRGLKVITEVLADNLDEELSRKI-------------SLPKEYNKSEAIAKIQGVLDKTED----IKVLVHTN-PKVTSVPKKKPDIFECGIGGANPEEKLNTALELLGNEVKASDILNEGQFVDAIATTKGKGFQGVVKRWGI 215          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_HALMA (50S ribosomal protein L3P OS=Haloarcula marismortui GN=rpl3p PE=1 SV=5)

HSP 1 Score: 115.931 bits (289), Expect = 2.464e-25
Identity = 73/236 (30.93%), Postives = 111/236 (47.03%), Query Frame = 2
Query:   80 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV--VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEK--QIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 775
            PR GSLGF PRKR+     +  ++P DD     +   F GYKAGMTH+V   ++P S     E    VT+IET          Y  TP G R L  VW      E+ R                       D    + + Q+    +   +  +R++ HT    +  + +KK  +ME +V GG++++++D+A    E   +  ++ +F+  E  D+ GVTKGKG +G V RWGV +
Sbjct:    7 PRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQ--GFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTL-----------------DVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQK 223          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_PYRAR (50S ribosomal protein L3P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.203e-25
Identity = 81/243 (33.33%), Postives = 118/243 (48.56%), Query Frame = 2
Query:   68 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG--LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV---VRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 778
            K   PR GS+G  PRKRAA    +V+ +P  +  KP  L  F  YKAGM H V   ++P S L+ KE  +AVT+++           Y   P    LRS   VWA  L + + R                      T   K  +  Q++++++Y  V   VR L  TQ   + G+ +K   L+EI + G   I E++ +A     K +    VF   +++D+I VTKGKG++GVV R+GVT L
Sbjct:    4 KINRPRRGSMGVYPRKRAADIVPRVRTWPDVNLGKPA-LLGFAAYKAGMLHAVVVDDRPTSPLYGKEVVKAVTVLDAPPLFVWGFRLYTLDPTNGYLRSAAEVWAGELPKHLSRVL--------------------TLPEKVDVDKQMKQVEEYRDVAVEVRALVATQPH-LSGIGKKTPELLEIPIGGVPNIDERIKFAISLLGKTVSPKDVFSPGQLVDVIAVTKGKGWQGVVKRFGVTIL 224          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_THEON (50S ribosomal protein L3P OS=Thermococcus onnurineus (strain NA1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.490e-25
Identity = 77/239 (32.22%), Postives = 115/239 (48.12%), Query Frame = 2
Query:   68 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV-----VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 769
            K   PR GSL + PRKRA     +++ +PKD      R+  F GYKAGMTHI+   ++PG     KE    VT++E           Y +   GL +   VW   L++ V+RR                      D  +++ QA+L +++   +      VR+L HTQ   +K   +KK  +ME  + G  +  K DYA     K++    V  + E++D+I VTKGKG +G V RWG+
Sbjct:    3 KIHRPRRGSLAYSPRKRAKSIVPRIRKWPKDSE---VRMLGFAGYKAGMTHILMIDDRPGLT-KGKEIFMPVTVVEVPPLFVYGIRAYRQGYLGLETATEVWFHELNDYVKRRI----------------KTLPKDYNEEAFQAKLGQLEDLVNDGEIVDVRLLVHTQPWLIK--LKKKPEVMEYAIGGDDVKAKFDYAKEKIGKELRASEVLHEGELLDVIAVTKGKGTQGPVKRWGI 219          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_META3 (50S ribosomal protein L3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.490e-25
Identity = 72/234 (30.77%), Postives = 113/234 (48.29%), Query Frame = 2
Query:   68 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 769
            K   PR GSL F PRKRA R   K++++P+ +  K   L AF  YKAG TH +     P S    ++    VT++E           Y K  +GL++L  VWA    +E+ R+                       +  K+   +L+++      VR + HT   K   L +KK  ++EI++ G  I++ + YA     K++ ++ VF   E ID + +TKGKG++G V RWG+
Sbjct:    4 KRNRPRRGSLAFSPRKRAKRPVPKIRSWPERETVK---LLAFPVYKAGTTHALYKENNPKSPNADQDVFTPVTVMEAPDITIAGIRAYGKDTKGLKALTEVWADSFDKELGRKI-------------------NLPKEPKANTEKLDEVADKIVEVRAIVHTN-PKDTNLPKKKPEIIEIKIGGKNISDIIAYAKDIIGKKLSINDVFTGGEFIDTVAITKGKGFQGPVKRWGI 214          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_PYRKO (50S ribosomal protein L3P OS=Pyrococcus kodakaraensis GN=rpl3p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.364e-25
Identity = 83/239 (34.73%), Postives = 114/239 (47.70%), Query Frame = 2
Query:   68 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFY---KNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV--VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 769
            K   PR GSL + PRKRA     +++++PKD      R+  F GYKAGMTHI+   + PG     KE    VTI+E           Y +   GL +   VW   L + V RR     KN+                 +E  ++   QLE +     +  VR+L HTQ   + GLK KK  +ME  + G  +  K DYA     K++    V  + E++D+I VTKGKG +G V RWGV
Sbjct:    3 KIHRPRRGSLAYSPRKRAKSIVPRIRSWPKDSE---VRMLGFAGYKAGMTHILMIDDSPGLT-KGKEIFVPVTIVEVPPLFVYGIRAYKQGYLGLETATEVWFHDLHKNVARRIKTLPKNY----------------NEEAFQAKLGQLEDLVNDGEIADVRLLVHTQ-PWLIGLK-KKPEVMEYAIGGDDVKAKFDYAKEKIGKELRAGEVLHEGELLDVIAVTKGKGTQGPVKRWGV 219          
The following BLAST results are available for this feature:
BLAST of CK933023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
RL3_SULIL1.887e-2531.0850S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIK1.887e-2531.0850S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_CALMQ1.887e-2532.9250S ribosomal protein L3P OS=Caldivirga maquilinge... [more]
RL3_PYRAE2.464e-2532.5150S ribosomal protein L3P OS=Pyrobaculum aerophilu... [more]
RL3_METS32.464e-2531.0650S ribosomal protein L3P OS=Methanobrevibacter sm... [more]
RL3_HALMA2.464e-2530.9350S ribosomal protein L3P OS=Haloarcula marismortu... [more]
RL3_PYRAR4.203e-2533.3350S ribosomal protein L3P OS=Pyrobaculum arsenatic... [more]
RL3_THEON5.490e-2532.2250S ribosomal protein L3P OS=Thermococcus onnurine... [more]
RL3_META35.490e-2530.7750S ribosomal protein L3P OS=Methanococcus aeolicu... [more]
RL3_PYRKO9.364e-2534.7350S ribosomal protein L3P OS=Pyrococcus kodakaraen... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_E09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933023 ID=CK933023; Name=CK933023; organism=Citrus sinensis; type=EST; length=780bp
GGGGCCAGCTCTAGACCATAACGAGTCAGTCGCCGCAGCAGCTCAGAGGA
GGAGAATGTCTCACAGGAAGTTTGAGCACCCAAGGCATGGTTCCCTTGGA
TTTCTTCCAAGGAAGAGAGCTGCTCGTCACAGAGGAAAGGTGAAGGCTTT
TCCCAAGGATGACCCAAGCAAGCCTTGCAGGCTCACTGCCTTTTTGGGTT
ACAAGGCTGGGATGACCCACATTGTTAGGGATGTCGAGAAACCTGGATCT
AAGCTTCACAAGAAGGAGACCTGTGAGGCTGTTACCATTATTGAAACCCC
TCCAATGATGGTGGTTGGAGTTGTGGGATATGTGAAGACACCTCGTGGTC
TTCGCTCTTTGAACACTGTATGGGCTCAGCATCTTAGTGAGGAGGTGAGA
AGAAGGTTCTACAAGAACTGGTGCAAATCCAAGAAGAAGGCTTTCACAAA
ATACTCAAAGCAGTATGAGACAGATGAAGGGAAGAAAAGTATCCAAGCTC
AGCTGGAGAAGATCAAGAAGTATGCATCTGTTGTTCGTGTTCTTGCTCAC
ACTCAGATTAGGAAAATGAAGGGTTTGAAGCAGAAGAAGGCACACCTGAT
GGAAATCCAGGTCAATGGTGGCACCATTGCTGAAAAAGTTGACTATGCAT
ATGGCTTCTTTGAAAAGCAAATTCCTGTTGATGCTGTTTTCCAGAAGGAT
GAGATGATTGACATCATCGGTGTCACGAAAGGTAAAGGTTATGAAGGTGT
TGTCACCCGTTGGGGTGTTACCCGCCTTCC
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